Wall clock time and date at job start Mon Mar 30 2020 04:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35455 * 125.56498 * 2 1 4 4 C 1.39841 * 107.86432 * 179.74009 * 3 2 1 5 5 C 1.37872 * 107.08445 * 359.97438 * 4 3 2 6 6 C 1.46674 * 126.23243 * 180.02562 * 5 4 3 7 7 O 1.21698 * 120.00373 * 174.28729 * 6 5 4 8 8 N 1.34787 * 120.00069 * 354.28429 * 6 5 4 9 9 C 1.47019 * 125.64437 * 4.70169 * 8 6 5 10 10 C 1.54328 * 107.26828 * 181.01915 * 9 8 6 11 11 C 1.55154 * 102.94297 * 22.19504 * 10 9 8 12 12 H 1.09000 * 111.00540 * 82.60824 * 11 10 9 13 13 C 1.50694 * 111.00810 * 206.42149 * 11 10 9 14 14 H 1.08002 * 119.99730 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00426 * 179.97438 * 13 11 10 16 16 N 1.31517 * 119.99807 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00169 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46701 * 60.00208 * 17 15 13 19 19 H 1.48498 * 109.46950 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47549 * 300.00528 * 17 15 13 21 21 C 1.47425 * 125.64897 * 184.39102 * 8 6 5 22 22 N 1.35539 * 125.56655 * 179.69557 * 2 1 3 23 23 C 1.46500 * 125.67115 * 0.24028 * 22 2 1 24 24 H 1.08992 * 109.47171 * 90.01970 * 1 2 3 25 25 H 1.09005 * 109.46948 * 210.02813 * 1 2 3 26 26 H 1.09008 * 109.46790 * 330.02363 * 1 2 3 27 27 H 1.08001 * 126.07062 * 359.69601 * 3 2 1 28 28 H 1.08000 * 126.45490 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.88676 * 300.43948 * 9 8 6 30 30 H 1.09004 * 109.88334 * 61.45197 * 9 8 6 31 31 H 1.08997 * 110.71480 * 140.55898 * 10 9 8 32 32 H 1.08998 * 110.72217 * 263.65601 * 10 9 8 33 33 H 0.97004 * 119.99990 * 180.02562 * 16 15 13 34 34 H 1.08995 * 110.36758 * 274.74940 * 21 8 6 35 35 H 1.09001 * 110.36188 * 37.07612 * 21 8 6 36 36 H 1.09005 * 109.47427 * 95.19066 * 23 22 2 37 37 H 1.09005 * 109.47065 * 215.18796 * 23 22 2 38 38 H 1.09001 * 109.47380 * 335.19180 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6767 0.0060 5 6 3.6122 -0.7019 0.0102 6 6 4.7859 -1.5815 0.0176 7 8 4.6435 -2.7853 0.1256 8 7 6.0222 -1.0566 -0.0953 9 6 6.3438 0.3774 -0.1342 10 6 7.8737 0.4996 -0.2964 11 6 8.2688 -0.8705 -0.9079 12 1 8.1144 -0.8759 -1.9869 13 6 9.6937 -1.2234 -0.5674 14 1 10.2887 -0.5493 0.0311 15 6 10.2376 -2.4071 -1.0189 16 7 9.5130 -3.2282 -1.7472 17 14 12.0042 -2.8441 -0.5973 18 1 12.1570 -2.9187 0.8779 19 1 12.3457 -4.1586 -1.1980 20 1 12.9142 -1.8023 -1.1371 21 6 7.2763 -1.8253 -0.1938 22 7 2.2953 -1.1025 0.0059 23 6 1.8241 -2.4897 0.0082 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8903 0.5135 27 1 1.9545 2.1269 -0.0046 28 1 4.5024 1.3091 0.0080 29 1 5.8426 0.8470 -0.9805 30 1 6.0280 0.8535 0.7942 31 1 8.1255 1.3128 -0.9770 32 1 8.3536 0.6458 0.6713 33 1 9.8955 -4.0612 -2.0646 34 1 7.6425 -2.0828 0.8000 35 1 7.1232 -2.7263 -0.7880 36 1 1.7988 -2.8666 -1.0143 37 1 2.5005 -3.1021 0.6045 38 1 0.8225 -2.5325 0.4361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706352220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:03 Heat of formation + Delta-G solvation = 14.915269 kcal Electronic energy + Delta-G solvation = -19766.450908 eV Core-core repulsion = 16802.735622 eV Total energy + Delta-G solvation = -2963.715286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29863 -38.84876 -36.61204 -33.31491 -32.56456 -31.72590 -30.47671 -28.31331 -26.73992 -26.33137 -24.52589 -23.01362 -20.74773 -20.01553 -19.39875 -18.77527 -16.64149 -16.49240 -15.73415 -15.53383 -14.91342 -14.60262 -14.44350 -13.50339 -13.48068 -13.29667 -13.12710 -12.75814 -12.63727 -12.41304 -12.09187 -11.97984 -11.86851 -11.69111 -11.58799 -11.18073 -10.93507 -10.56919 -10.47560 -9.87760 -9.42400 -9.26742 -9.04776 -8.60259 -8.51756 -8.02684 -7.72909 -6.09907 -4.15345 1.75612 2.81076 2.85676 3.29836 3.35473 3.36933 3.80727 3.83444 4.38888 4.78067 4.84776 4.99987 5.08148 5.23886 5.27872 5.41871 5.51023 5.54506 5.61837 5.64858 5.70093 5.78424 5.94371 6.15943 6.26157 6.35640 6.47618 6.75148 6.84008 6.93145 6.97672 7.09747 7.16814 7.35365 7.43457 7.67935 7.89459 8.23844 8.28898 8.74192 8.88432 9.50656 10.99722 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042075 B = 0.004553 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.314365 B = 6148.618405 C = 6671.487015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.028 3.972 3 C -0.209 4.209 4 C -0.156 4.156 5 C -0.036 4.036 6 C 0.589 3.411 7 O -0.563 6.563 8 N -0.599 5.599 9 C 0.096 3.904 10 C -0.131 4.131 11 C 0.047 3.953 12 H 0.044 0.956 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.120 3.880 22 N -0.410 5.410 23 C 0.067 3.933 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.138 0.862 28 H 0.157 0.843 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.319 7.511 3.027 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.233 4.233 4 C -0.182 4.182 5 C -0.150 4.150 6 C 0.379 3.621 7 O -0.445 6.445 8 N -0.331 5.331 9 C -0.027 4.027 10 C -0.169 4.169 11 C 0.028 3.972 12 H 0.062 0.938 13 C -0.557 4.557 14 H 0.080 0.920 15 C -0.139 4.139 16 N -0.523 5.523 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.000 4.000 22 N -0.084 5.084 23 C -0.074 4.074 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.156 0.844 28 H 0.174 0.826 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.541 6.265 2.988 17.020 hybrid contribution 0.884 -0.327 0.174 0.959 sum -14.657 5.937 3.162 16.127 Atomic orbital electron populations 1.20339 0.88132 1.03069 1.02577 1.20491 0.93537 0.86055 1.08770 1.20602 0.92683 0.97437 1.12611 1.21984 0.98186 0.92527 1.05472 1.20221 0.84175 0.93813 1.16761 1.16626 0.81447 0.86408 0.77644 1.90737 1.85847 1.15029 1.52855 1.48529 1.06110 1.08617 1.69802 1.22403 0.98163 0.82073 1.00085 1.22783 0.91716 1.00858 1.01550 1.19889 0.93776 0.87825 0.95749 0.93830 1.20944 0.96037 1.04816 1.33887 0.92046 1.25052 0.97921 0.96341 0.94539 1.69944 1.36616 1.10906 1.34790 0.86602 0.84708 0.77636 0.78760 1.20137 1.21261 1.20146 1.22855 0.79832 0.96895 1.00442 1.43729 1.04755 1.06414 1.53489 1.22200 1.01029 0.80024 1.04135 0.91013 0.91866 0.90113 0.84380 0.82600 0.91698 0.92116 0.91534 0.91458 0.92610 0.92672 0.90226 0.90779 0.87953 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.07 36.00 0.36 -0.34 16 2 C 0.03 0.36 6.87 -81.95 -0.56 -0.20 16 3 C -0.21 -2.77 10.71 -39.98 -0.43 -3.20 16 4 C -0.16 -2.39 9.32 -39.12 -0.36 -2.76 16 5 C -0.04 -0.65 6.86 -81.99 -0.56 -1.21 16 6 C 0.59 12.51 7.81 -12.85 -0.10 12.41 16 7 O -0.56 -13.37 15.05 5.19 0.08 -13.29 16 8 N -0.60 -12.67 3.33 -171.92 -0.57 -13.24 16 9 C 0.10 1.66 4.99 -3.06 -0.02 1.65 16 10 C -0.13 -2.49 6.39 -24.90 -0.16 -2.65 16 11 C 0.05 1.13 2.86 -89.51 -0.26 0.88 16 12 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.52 -13.69 8.50 -34.44 -0.29 -13.98 16 14 H 0.06 1.57 7.76 -52.49 -0.41 1.16 16 15 C 0.06 1.76 5.37 -17.82 -0.10 1.66 16 16 N -0.89 -25.30 12.55 55.43 0.70 -24.61 16 17 Si 0.90 20.87 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.12 2.93 5.88 -2.41 -0.01 2.92 16 22 N -0.41 -6.28 3.16 -115.62 -0.37 -6.65 16 23 C 0.07 0.87 10.35 59.85 0.62 1.49 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.47 6.92 -51.93 -0.36 0.11 16 26 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.16 2.15 4.42 -52.49 -0.23 1.92 16 29 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16 30 H 0.06 0.93 7.08 -51.93 -0.37 0.56 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.25 8.02 -51.93 -0.42 0.84 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 34 H 0.05 1.39 8.03 -51.93 -0.42 0.98 16 35 H 0.08 2.20 7.69 -51.93 -0.40 1.80 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.54 6.50 -51.93 -0.34 1.20 16 38 H 0.08 0.73 6.81 -51.93 -0.35 0.38 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -31.37 307.97 -7.72 -39.09 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.31 Total: 1.56 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.87 Total: -3.35 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.24 Total: -44.50 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.37 -7.72 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706352220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.007 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds