Wall clock time and date at job start Mon Mar 30 2020 04:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35455 * 125.56498 * 2 1 4 4 C 1.39841 * 107.86432 * 179.74009 * 3 2 1 5 5 C 1.37872 * 107.08445 * 359.97438 * 4 3 2 6 6 C 1.46674 * 126.23243 * 180.02562 * 5 4 3 7 7 O 1.21698 * 120.00373 * 174.28729 * 6 5 4 8 8 N 1.34787 * 120.00069 * 354.28429 * 6 5 4 9 9 C 1.47019 * 125.64437 * 4.70169 * 8 6 5 10 10 C 1.54328 * 107.26828 * 181.01915 * 9 8 6 11 11 C 1.55154 * 102.94297 * 22.19504 * 10 9 8 12 12 H 1.09000 * 111.00540 * 82.60824 * 11 10 9 13 13 C 1.50694 * 111.00810 * 206.42149 * 11 10 9 14 14 H 1.08002 * 119.99730 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00426 * 179.97438 * 13 11 10 16 16 N 1.31517 * 119.99807 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00169 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46701 * 60.00208 * 17 15 13 19 19 H 1.48498 * 109.46950 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47549 * 300.00528 * 17 15 13 21 21 C 1.47425 * 125.64897 * 184.39102 * 8 6 5 22 22 N 1.35539 * 125.56655 * 179.69557 * 2 1 3 23 23 C 1.46500 * 125.67115 * 0.24028 * 22 2 1 24 24 H 1.08992 * 109.47171 * 90.01970 * 1 2 3 25 25 H 1.09005 * 109.46948 * 210.02813 * 1 2 3 26 26 H 1.09008 * 109.46790 * 330.02363 * 1 2 3 27 27 H 1.08001 * 126.07062 * 359.69601 * 3 2 1 28 28 H 1.08000 * 126.45490 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.88676 * 300.43948 * 9 8 6 30 30 H 1.09004 * 109.88334 * 61.45197 * 9 8 6 31 31 H 1.08997 * 110.71480 * 140.55898 * 10 9 8 32 32 H 1.08998 * 110.72217 * 263.65601 * 10 9 8 33 33 H 0.97004 * 119.99990 * 180.02562 * 16 15 13 34 34 H 1.08995 * 110.36758 * 274.74940 * 21 8 6 35 35 H 1.09001 * 110.36188 * 37.07612 * 21 8 6 36 36 H 1.09005 * 109.47427 * 95.19066 * 23 22 2 37 37 H 1.09005 * 109.47065 * 215.18796 * 23 22 2 38 38 H 1.09001 * 109.47380 * 335.19180 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6767 0.0060 5 6 3.6122 -0.7019 0.0102 6 6 4.7859 -1.5815 0.0176 7 8 4.6435 -2.7853 0.1256 8 7 6.0222 -1.0566 -0.0953 9 6 6.3438 0.3774 -0.1342 10 6 7.8737 0.4996 -0.2964 11 6 8.2688 -0.8705 -0.9079 12 1 8.1144 -0.8759 -1.9869 13 6 9.6937 -1.2234 -0.5674 14 1 10.2887 -0.5493 0.0311 15 6 10.2376 -2.4071 -1.0189 16 7 9.5130 -3.2282 -1.7472 17 14 12.0042 -2.8441 -0.5973 18 1 12.1570 -2.9187 0.8779 19 1 12.3457 -4.1586 -1.1980 20 1 12.9142 -1.8023 -1.1371 21 6 7.2763 -1.8253 -0.1938 22 7 2.2953 -1.1025 0.0059 23 6 1.8241 -2.4897 0.0082 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8903 0.5135 27 1 1.9545 2.1269 -0.0046 28 1 4.5024 1.3091 0.0080 29 1 5.8426 0.8470 -0.9805 30 1 6.0280 0.8535 0.7942 31 1 8.1255 1.3128 -0.9770 32 1 8.3536 0.6458 0.6713 33 1 9.8955 -4.0612 -2.0646 34 1 7.6425 -2.0828 0.8000 35 1 7.1232 -2.7263 -0.7880 36 1 1.7988 -2.8666 -1.0143 37 1 2.5005 -3.1021 0.6045 38 1 0.8225 -2.5325 0.4361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706352220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:02 Heat of formation + Delta-G solvation = -4.407378 kcal Electronic energy + Delta-G solvation = -19767.288801 eV Core-core repulsion = 16802.735622 eV Total energy + Delta-G solvation = -2964.553179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.45988 -40.44585 -38.32014 -35.10426 -33.87467 -32.84752 -32.04008 -29.96583 -28.12303 -27.43056 -26.26196 -24.53778 -22.04527 -21.65152 -20.87872 -19.99245 -18.58878 -17.97447 -17.15327 -16.99549 -16.45007 -16.24485 -15.85428 -15.04533 -14.75319 -14.40083 -14.22995 -14.18785 -13.94091 -13.66734 -13.54452 -13.49785 -13.15939 -12.95205 -12.84145 -12.77040 -12.61114 -12.46310 -12.12590 -11.60591 -11.12873 -11.08816 -10.96951 -10.58695 -9.73738 -9.59723 -8.96907 -8.18000 -6.30413 0.47717 1.43291 1.44970 1.52845 1.62435 1.78882 2.34433 2.36467 2.44648 3.14878 3.60343 3.91249 3.94991 3.97743 4.26300 4.27934 4.30418 4.38359 4.49974 4.59348 4.63354 4.70707 4.78620 4.83928 4.96360 5.09482 5.11463 5.17573 5.19580 5.27943 5.34368 5.48274 5.66501 5.84365 5.93818 6.01329 6.25526 6.35324 6.62604 6.82308 7.12547 7.39930 8.91338 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042075 B = 0.004553 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.314365 B = 6148.618405 C = 6671.487015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.045 3.955 3 C -0.219 4.219 4 C -0.142 4.142 5 C -0.088 4.088 6 C 0.580 3.420 7 O -0.606 6.606 8 N -0.608 5.608 9 C 0.099 3.901 10 C -0.119 4.119 11 C 0.039 3.961 12 H 0.013 0.987 13 C -0.530 4.530 14 H 0.070 0.930 15 C 0.010 3.990 16 N -0.924 5.924 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.263 1.263 21 C 0.137 3.863 22 N -0.420 5.420 23 C 0.066 3.934 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.261 0.739 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.001 10.390 3.781 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.242 4.242 4 C -0.169 4.169 5 C -0.200 4.200 6 C 0.373 3.627 7 O -0.492 6.492 8 N -0.338 5.338 9 C -0.023 4.023 10 C -0.157 4.157 11 C 0.019 3.981 12 H 0.031 0.969 13 C -0.568 4.568 14 H 0.089 0.911 15 C -0.189 4.189 16 N -0.562 5.562 17 Si 0.786 3.214 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.188 1.188 21 C 0.014 3.986 22 N -0.095 5.095 23 C -0.074 4.074 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.189 0.811 28 H 0.187 0.813 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.218 9.192 3.748 19.875 hybrid contribution 1.269 -1.183 -0.068 1.736 sum -15.949 8.009 3.680 18.223 Atomic orbital electron populations 1.20549 0.84585 1.04907 1.04079 1.21378 0.95639 0.85080 1.05143 1.21040 0.91573 0.99160 1.12452 1.22272 0.99948 0.91397 1.03262 1.19839 0.84106 0.94230 1.21814 1.17252 0.82378 0.86514 0.76582 1.90695 1.86534 1.17068 1.54854 1.48533 1.05243 1.09871 1.70182 1.22609 0.97121 0.80007 1.02530 1.22714 0.92817 0.98233 1.01924 1.19801 0.92976 0.91164 0.94140 0.96912 1.21381 0.97204 1.04849 1.33333 0.91141 1.25923 1.02090 0.96420 0.94499 1.70110 1.38463 1.11306 1.36354 0.85558 0.79851 0.77318 0.78661 1.19445 1.21581 1.18799 1.22320 0.81989 0.95881 0.98390 1.43982 1.04248 1.07659 1.53583 1.22251 1.02271 0.79049 1.03875 0.89500 0.90600 0.87757 0.81106 0.81304 0.89606 0.89067 0.89022 0.90749 0.92975 0.94494 0.94878 0.90915 0.90958 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.07 71.23 0.72 -0.30 16 2 C 0.04 1.00 6.87 41.34 0.28 1.29 16 3 C -0.22 -4.95 10.71 22.01 0.24 -4.71 16 4 C -0.14 -4.01 9.32 22.57 0.21 -3.80 16 5 C -0.09 -3.10 6.86 40.35 0.28 -2.83 16 6 C 0.58 25.67 7.81 86.44 0.67 26.35 16 7 O -0.61 -30.90 15.05 -4.34 -0.07 -30.97 16 8 N -0.61 -26.48 3.33 -816.03 -2.71 -29.19 16 9 C 0.10 3.28 4.99 86.73 0.43 3.71 16 10 C -0.12 -4.38 6.39 31.78 0.20 -4.17 16 11 C 0.04 1.92 2.86 -10.07 -0.03 1.89 16 12 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 13 C -0.53 -28.44 8.50 25.60 0.22 -28.22 16 14 H 0.07 3.57 7.76 -2.91 -0.02 3.55 16 15 C 0.01 0.56 5.37 84.65 0.45 1.01 16 16 N -0.92 -55.34 12.55 21.45 0.27 -55.07 16 17 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.14 7.07 5.88 86.93 0.51 7.58 16 22 N -0.42 -12.34 3.16 -519.70 -1.64 -13.98 16 23 C 0.07 1.69 10.35 127.77 1.32 3.01 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.77 6.92 -2.38 -0.02 0.75 16 26 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 28 H 0.17 4.10 4.42 -2.91 -0.01 4.09 16 29 H 0.09 2.51 6.74 -2.39 -0.02 2.50 16 30 H 0.09 2.51 7.08 -2.39 -0.02 2.50 16 31 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.07 2.63 8.02 -2.39 -0.02 2.61 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.04 1.99 8.03 -2.39 -0.02 1.97 16 35 H 0.03 1.98 7.69 -2.39 -0.02 1.96 16 36 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.07 2.29 6.50 -2.38 -0.02 2.28 16 38 H 0.12 1.94 6.81 -2.39 -0.02 1.93 16 Total: -1.00 -73.38 307.97 4.44 -68.94 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.06 Total: 13.98 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.51 Total: 0.82 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -4.09 Total: -98.24 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.07 Total: -30.97 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.38 4.44 -68.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706352220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.533 kcal (2) G-P(sol) polarization free energy of solvation -73.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds