Wall clock time and date at job start Mon Mar 30 2020 04:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35459 * 125.56473 * 2 1 4 4 C 1.39835 * 107.86313 * 180.23867 * 3 2 1 5 5 C 1.37874 * 107.08746 * 359.57831 * 4 3 2 6 6 C 1.46677 * 126.23202 * 180.11688 * 5 4 3 7 7 O 1.21694 * 119.99715 * 171.70400 * 6 5 4 8 8 N 1.34772 * 120.00050 * 351.70397 * 6 5 4 9 9 C 1.47428 * 125.64962 * 1.17048 * 8 6 5 10 10 C 1.54907 * 104.83388 * 204.09382 * 9 8 6 11 11 C 1.55157 * 101.57962 * 322.99189 * 10 9 8 12 12 H 1.09001 * 110.72473 * 277.13604 * 11 10 9 13 13 C 1.50702 * 110.71970 * 154.04247 * 11 10 9 14 14 H 1.07999 * 119.99791 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00329 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00464 * 179.97438 * 15 13 11 17 17 Si 1.86810 * 119.99645 * 0.02562 * 15 13 11 18 18 H 1.48493 * 109.47093 * 90.00044 * 17 15 13 19 19 H 1.48504 * 109.46961 * 209.99875 * 17 15 13 20 20 H 1.48495 * 109.47214 * 329.99763 * 17 15 13 21 21 C 1.47018 * 125.64879 * 180.86838 * 8 6 5 22 22 N 1.35535 * 125.56620 * 179.97438 * 2 1 3 23 23 C 1.46503 * 125.67624 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.46535 * 90.02155 * 1 2 3 25 25 H 1.08997 * 109.47108 * 210.02492 * 1 2 3 26 26 H 1.08999 * 109.46923 * 330.02657 * 1 2 3 27 27 H 1.08000 * 126.06563 * 359.97438 * 3 2 1 28 28 H 1.07997 * 126.45385 * 179.73836 * 4 3 2 29 29 H 1.09000 * 110.36785 * 322.93380 * 9 8 6 30 30 H 1.08997 * 110.36313 * 85.14511 * 9 8 6 31 31 H 1.08996 * 111.00514 * 81.06284 * 10 9 8 32 32 H 1.08997 * 111.00740 * 204.91726 * 10 9 8 33 33 H 0.96997 * 119.99658 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.88182 * 298.39449 * 21 8 6 35 35 H 1.09003 * 109.88841 * 59.55605 * 21 8 6 36 36 H 1.09000 * 109.46837 * 95.52280 * 23 22 2 37 37 H 1.09000 * 109.47166 * 215.52511 * 23 22 2 38 38 H 1.08997 * 109.47036 * 335.52387 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0055 5 6 3.6123 -0.7019 0.0009 6 6 4.7861 -1.5815 0.0007 7 8 4.6482 -2.7802 0.1588 8 7 6.0173 -1.0621 -0.1745 9 6 6.3294 0.3678 -0.3518 10 6 7.6826 0.3879 -1.1055 11 6 8.4149 -0.8199 -0.4631 12 1 8.8817 -0.5314 0.4787 13 6 9.4389 -1.3884 -1.4114 14 1 9.5746 -0.9469 -2.3877 15 6 10.2033 -2.4714 -1.0323 16 7 11.0966 -2.9679 -1.8601 17 14 9.9690 -3.2346 0.6566 18 1 8.9405 -4.3028 0.5787 19 1 11.2542 -3.8176 1.1189 20 1 9.5263 -2.1900 1.6147 21 6 7.2722 -1.8270 -0.2143 22 7 2.2954 -1.1025 0.0005 23 6 1.8243 -2.4897 0.0006 24 1 -0.3632 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 1.9545 2.1269 -0.0004 28 1 4.5024 1.3092 -0.0109 29 1 5.5565 0.8539 -0.9470 30 1 6.4256 0.8580 0.6170 31 1 7.5368 0.2328 -2.1744 32 1 8.2212 1.3166 -0.9170 33 1 11.6346 -3.7296 -1.5931 34 1 7.4257 -2.3372 0.7367 35 1 7.2379 -2.5538 -1.0259 36 1 1.8015 -2.8657 -1.0223 37 1 2.4992 -3.1026 0.5981 38 1 0.8217 -2.5329 0.4260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706352221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:04 Heat of formation + Delta-G solvation = 24.795456 kcal Electronic energy + Delta-G solvation = -19878.691413 eV Core-core repulsion = 16915.404564 eV Total energy + Delta-G solvation = -2963.286849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43056 -39.09419 -36.85856 -33.39193 -32.62450 -31.84993 -30.78649 -28.83355 -26.94086 -26.46994 -24.45707 -23.17979 -20.92406 -20.10378 -19.50683 -18.94209 -16.91992 -16.67596 -15.97296 -15.76930 -15.23087 -14.73626 -14.21699 -13.71241 -13.64235 -13.32015 -13.26995 -12.89658 -12.88290 -12.74652 -12.30333 -12.26322 -11.98278 -11.88845 -11.59849 -11.35276 -10.86196 -10.66907 -10.40617 -9.78679 -9.63455 -9.53407 -9.22247 -8.69808 -8.64452 -8.21815 -7.89786 -6.15477 -4.17155 1.62297 2.67401 2.74532 3.28279 3.34084 3.38062 3.60925 3.65926 4.35930 4.67625 4.75445 4.84291 4.97720 5.14263 5.18911 5.30586 5.33699 5.42903 5.49125 5.55579 5.63671 5.69742 5.77664 5.91799 6.09293 6.13989 6.22719 6.44462 6.60176 6.63112 6.70337 6.86782 6.97975 7.05252 7.25013 7.31664 7.64207 7.98436 8.42494 8.53667 8.88139 9.45610 10.96981 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035841 B = 0.005132 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.030765 B = 5454.930954 C = 5937.980360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.031 3.969 3 C -0.208 4.208 4 C -0.156 4.156 5 C -0.038 4.038 6 C 0.591 3.409 7 O -0.562 6.562 8 N -0.596 5.596 9 C 0.083 3.917 10 C -0.117 4.117 11 C 0.006 3.994 12 H 0.044 0.956 13 C -0.512 4.512 14 H 0.079 0.921 15 C 0.076 3.924 16 N -0.894 5.894 17 Si 0.868 3.132 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.263 1.263 21 C 0.100 3.900 22 N -0.410 5.410 23 C 0.066 3.934 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.160 0.840 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.266 0.734 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.145 7.792 4.467 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.232 4.232 4 C -0.181 4.181 5 C -0.152 4.152 6 C 0.381 3.619 7 O -0.444 6.444 8 N -0.327 5.327 9 C -0.040 4.040 10 C -0.155 4.155 11 C -0.014 4.014 12 H 0.062 0.938 13 C -0.549 4.549 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.532 5.532 17 Si 0.696 3.304 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.188 1.188 21 C -0.021 4.021 22 N -0.083 5.083 23 C -0.075 4.075 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.177 0.823 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.223 6.576 4.530 20.816 hybrid contribution -0.042 -0.629 0.882 1.084 sum -19.265 5.947 5.412 20.876 Atomic orbital electron populations 1.20353 0.88030 1.03156 1.02668 1.20520 0.93596 0.85998 1.08424 1.20621 0.92620 0.97524 1.12458 1.22026 0.98256 0.92451 1.05399 1.20088 0.84091 0.93728 1.17265 1.16650 0.81401 0.86362 0.77508 1.90744 1.85744 1.15368 1.52510 1.48334 1.05669 1.09319 1.69387 1.22930 0.98945 0.81944 1.00165 1.22746 0.93177 0.99599 1.00007 1.20281 0.92152 0.91378 0.97559 0.93764 1.20887 1.17233 1.14728 1.02095 0.90259 1.25014 0.94538 0.96389 0.96776 1.69882 1.22996 1.24456 1.35825 0.87049 0.77672 0.80376 0.85312 1.19826 1.21386 1.18756 1.23002 0.81934 0.96614 1.00541 1.43731 1.04682 1.06477 1.53437 1.22217 1.01161 0.79967 1.04165 0.90916 0.91825 0.90024 0.84242 0.82297 0.89787 0.91563 0.90816 0.90751 0.92427 0.93499 0.90706 0.90731 0.87954 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.07 36.01 0.36 -0.29 16 2 C 0.03 0.37 6.87 -81.95 -0.56 -0.19 16 3 C -0.21 -2.56 10.71 -39.98 -0.43 -2.98 16 4 C -0.16 -2.21 9.16 -39.12 -0.36 -2.57 16 5 C -0.04 -0.64 6.84 -81.98 -0.56 -1.20 16 6 C 0.59 11.82 7.81 -12.86 -0.10 11.72 16 7 O -0.56 -12.67 15.10 5.19 0.08 -12.59 16 8 N -0.60 -11.82 3.33 -172.06 -0.57 -12.40 16 9 C 0.08 1.32 5.25 -2.53 -0.01 1.31 16 10 C -0.12 -2.12 6.50 -24.58 -0.16 -2.28 16 11 C 0.01 0.13 2.32 -89.93 -0.21 -0.08 16 12 H 0.04 1.00 7.03 -51.93 -0.36 0.64 16 13 C -0.51 -13.85 8.96 -34.44 -0.31 -14.16 16 14 H 0.08 2.30 8.01 -52.49 -0.42 1.88 16 15 C 0.08 2.14 5.46 -17.82 -0.10 2.05 16 16 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 17 Si 0.87 21.54 25.03 -169.99 -4.25 17.29 16 18 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.21 6.42 56.52 0.36 -5.85 16 21 C 0.10 2.29 4.99 -3.06 -0.02 2.27 16 22 N -0.41 -5.88 3.16 -115.61 -0.37 -6.24 16 23 C 0.07 0.80 10.38 59.85 0.62 1.42 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.43 6.92 -51.93 -0.36 0.07 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.16 1.98 4.71 -52.49 -0.25 1.73 16 29 H 0.08 1.16 5.30 -51.93 -0.28 0.89 16 30 H 0.07 0.94 8.01 -51.93 -0.42 0.53 16 31 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.05 1.10 6.28 -51.93 -0.33 0.78 16 35 H 0.07 1.87 7.82 -51.93 -0.41 1.46 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.45 6.48 -51.93 -0.34 1.11 16 38 H 0.08 0.68 6.81 -51.93 -0.35 0.33 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -32.82 300.84 -6.84 -39.66 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.21 Total: 0.85 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.83 Total: -4.99 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.16 Total: -44.76 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.25 Total: 17.29 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.82 -6.84 -39.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706352221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.460 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds