Wall clock time and date at job start Mon Mar 30 2020 04:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35459 * 125.56473 * 2 1 4 4 C 1.39835 * 107.86313 * 180.23867 * 3 2 1 5 5 C 1.37874 * 107.08746 * 359.57831 * 4 3 2 6 6 C 1.46677 * 126.23202 * 180.11688 * 5 4 3 7 7 O 1.21694 * 119.99715 * 171.70400 * 6 5 4 8 8 N 1.34772 * 120.00050 * 351.70397 * 6 5 4 9 9 C 1.47428 * 125.64962 * 1.17048 * 8 6 5 10 10 C 1.54907 * 104.83388 * 204.09382 * 9 8 6 11 11 C 1.55157 * 101.57962 * 322.99189 * 10 9 8 12 12 H 1.09001 * 110.72473 * 277.13604 * 11 10 9 13 13 C 1.50702 * 110.71970 * 154.04247 * 11 10 9 14 14 H 1.07999 * 119.99791 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00329 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00464 * 179.97438 * 15 13 11 17 17 Si 1.86810 * 119.99645 * 0.02562 * 15 13 11 18 18 H 1.48493 * 109.47093 * 90.00044 * 17 15 13 19 19 H 1.48504 * 109.46961 * 209.99875 * 17 15 13 20 20 H 1.48495 * 109.47214 * 329.99763 * 17 15 13 21 21 C 1.47018 * 125.64879 * 180.86838 * 8 6 5 22 22 N 1.35535 * 125.56620 * 179.97438 * 2 1 3 23 23 C 1.46503 * 125.67624 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.46535 * 90.02155 * 1 2 3 25 25 H 1.08997 * 109.47108 * 210.02492 * 1 2 3 26 26 H 1.08999 * 109.46923 * 330.02657 * 1 2 3 27 27 H 1.08000 * 126.06563 * 359.97438 * 3 2 1 28 28 H 1.07997 * 126.45385 * 179.73836 * 4 3 2 29 29 H 1.09000 * 110.36785 * 322.93380 * 9 8 6 30 30 H 1.08997 * 110.36313 * 85.14511 * 9 8 6 31 31 H 1.08996 * 111.00514 * 81.06284 * 10 9 8 32 32 H 1.08997 * 111.00740 * 204.91726 * 10 9 8 33 33 H 0.96997 * 119.99658 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.88182 * 298.39449 * 21 8 6 35 35 H 1.09003 * 109.88841 * 59.55605 * 21 8 6 36 36 H 1.09000 * 109.46837 * 95.52280 * 23 22 2 37 37 H 1.09000 * 109.47166 * 215.52511 * 23 22 2 38 38 H 1.08997 * 109.47036 * 335.52387 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0055 5 6 3.6123 -0.7019 0.0009 6 6 4.7861 -1.5815 0.0007 7 8 4.6482 -2.7802 0.1588 8 7 6.0173 -1.0621 -0.1745 9 6 6.3294 0.3678 -0.3518 10 6 7.6826 0.3879 -1.1055 11 6 8.4149 -0.8199 -0.4631 12 1 8.8817 -0.5314 0.4787 13 6 9.4389 -1.3884 -1.4114 14 1 9.5746 -0.9469 -2.3877 15 6 10.2033 -2.4714 -1.0323 16 7 11.0966 -2.9679 -1.8601 17 14 9.9690 -3.2346 0.6566 18 1 8.9405 -4.3028 0.5787 19 1 11.2542 -3.8176 1.1189 20 1 9.5263 -2.1900 1.6147 21 6 7.2722 -1.8270 -0.2143 22 7 2.2954 -1.1025 0.0005 23 6 1.8243 -2.4897 0.0006 24 1 -0.3632 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 1.9545 2.1269 -0.0004 28 1 4.5024 1.3092 -0.0109 29 1 5.5565 0.8539 -0.9470 30 1 6.4256 0.8580 0.6170 31 1 7.5368 0.2328 -2.1744 32 1 8.2212 1.3166 -0.9170 33 1 11.6346 -3.7296 -1.5931 34 1 7.4257 -2.3372 0.7367 35 1 7.2379 -2.5538 -1.0259 36 1 1.8015 -2.8657 -1.0223 37 1 2.4992 -3.1026 0.5981 38 1 0.8217 -2.5329 0.4260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706352221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:04 Heat of formation + Delta-G solvation = 2.916050 kcal Electronic energy + Delta-G solvation = -19879.640175 eV Core-core repulsion = 16915.404564 eV Total energy + Delta-G solvation = -2964.235611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.49869 -40.57259 -38.45669 -35.13318 -33.95537 -32.99617 -32.21127 -30.39106 -28.22730 -27.46226 -26.12404 -24.63882 -22.10359 -21.59040 -21.03522 -20.02493 -18.92874 -18.04583 -17.45241 -17.06625 -16.50389 -16.13030 -15.89838 -15.16601 -14.88046 -14.81499 -14.52615 -14.27422 -13.97428 -13.76068 -13.66508 -13.40355 -13.25560 -12.96321 -12.85839 -12.80221 -12.58911 -12.42382 -12.14434 -11.61180 -11.30213 -11.21335 -11.06734 -10.82473 -9.79459 -9.65910 -8.98858 -8.36174 -6.40501 0.44334 1.27473 1.31928 1.36340 1.56329 1.77017 2.25568 2.30427 2.31703 2.98183 3.52356 3.85294 3.90712 3.94277 4.12299 4.25750 4.26750 4.28639 4.35194 4.48075 4.59494 4.63653 4.66483 4.77841 4.83311 4.92988 5.05937 5.10562 5.14381 5.23743 5.26775 5.30639 5.53730 5.62205 5.91740 6.00318 6.24611 6.32839 6.51830 6.68385 7.04480 7.25597 8.80018 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035841 B = 0.005132 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.030765 B = 5454.930954 C = 5937.980360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.046 3.954 3 C -0.218 4.218 4 C -0.142 4.142 5 C -0.089 4.089 6 C 0.584 3.416 7 O -0.604 6.604 8 N -0.604 5.604 9 C 0.088 3.912 10 C -0.111 4.111 11 C 0.001 3.999 12 H 0.053 0.947 13 C -0.510 4.510 14 H 0.047 0.953 15 C 0.023 3.977 16 N -0.942 5.942 17 Si 0.923 3.077 18 H -0.283 1.283 19 H -0.282 1.282 20 H -0.239 1.239 21 C 0.110 3.890 22 N -0.420 5.420 23 C 0.065 3.935 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.267 0.733 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.142 10.458 5.923 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.241 4.241 4 C -0.168 4.168 5 C -0.200 4.200 6 C 0.376 3.624 7 O -0.489 6.489 8 N -0.334 5.334 9 C -0.033 4.033 10 C -0.148 4.148 11 C -0.018 4.018 12 H 0.072 0.928 13 C -0.548 4.548 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.581 5.581 17 Si 0.748 3.252 18 H -0.210 1.210 19 H -0.208 1.208 20 H -0.163 1.163 21 C -0.013 4.013 22 N -0.094 5.094 23 C -0.076 4.076 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.189 0.811 28 H 0.192 0.808 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.225 9.290 5.993 24.823 hybrid contribution 0.763 -1.396 0.340 1.627 sum -21.463 7.893 6.333 23.729 Atomic orbital electron populations 1.20552 0.84727 1.04876 1.04075 1.21368 0.95591 0.85130 1.05065 1.21054 0.91660 0.99142 1.12268 1.22324 0.99950 0.91355 1.03188 1.19769 0.84011 0.94188 1.22066 1.17229 0.82243 0.86416 0.76481 1.90707 1.86395 1.17324 1.54451 1.48364 1.04789 1.10554 1.69741 1.23156 0.98200 0.80083 1.01825 1.22723 0.94154 0.98782 0.99190 1.20225 0.91278 0.93125 0.97195 0.92849 1.21183 1.17815 1.14175 1.01626 0.93464 1.25759 0.94471 0.97130 1.00174 1.70007 1.24645 1.25547 1.37934 0.86162 0.77356 0.79793 0.81865 1.20965 1.20774 1.16283 1.22542 0.83993 0.96272 0.98506 1.43980 1.04261 1.07638 1.53563 1.22265 1.02329 0.79054 1.03931 0.89498 0.90657 0.87811 0.81133 0.80759 0.87079 0.88662 0.92146 0.87714 0.92364 0.94584 0.94353 0.90810 0.90827 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.07 71.24 0.72 -0.18 16 2 C 0.05 0.93 6.87 41.35 0.28 1.21 16 3 C -0.22 -4.41 10.71 22.01 0.24 -4.17 16 4 C -0.14 -3.56 9.16 22.57 0.21 -3.35 16 5 C -0.09 -2.84 6.84 40.35 0.28 -2.56 16 6 C 0.58 23.53 7.81 86.45 0.67 24.20 16 7 O -0.60 -28.36 15.10 -4.33 -0.07 -28.42 16 8 N -0.60 -23.73 3.33 -816.48 -2.72 -26.44 16 9 C 0.09 2.58 5.25 86.85 0.46 3.04 16 10 C -0.11 -3.81 6.50 31.99 0.21 -3.60 16 11 C 0.00 0.05 2.32 -10.35 -0.02 0.03 16 12 H 0.05 2.32 7.03 -2.39 -0.02 2.31 16 13 C -0.51 -28.39 8.96 25.60 0.23 -28.17 16 14 H 0.05 2.86 8.01 -2.91 -0.02 2.84 16 15 C 0.02 1.35 5.46 84.65 0.46 1.81 16 16 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 17 Si 0.92 45.36 25.03 68.60 1.72 47.08 16 18 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.24 -10.76 6.42 99.48 0.64 -10.12 16 21 C 0.11 5.09 4.99 86.73 0.43 5.52 16 22 N -0.42 -11.26 3.16 -519.69 -1.64 -12.90 16 23 C 0.07 1.50 10.38 127.77 1.33 2.83 16 24 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.66 6.92 -2.39 -0.02 0.64 16 26 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.18 3.60 4.71 -2.91 -0.01 3.59 16 29 H 0.11 2.69 5.30 -2.39 -0.01 2.67 16 30 H 0.10 2.30 8.01 -2.39 -0.02 2.28 16 31 H 0.06 2.23 8.03 -2.39 -0.02 2.21 16 32 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.04 1.72 6.28 -2.39 -0.01 1.70 16 35 H 0.04 2.01 7.82 -2.39 -0.02 1.99 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.15 6.48 -2.39 -0.02 2.13 16 38 H 0.12 1.71 6.81 -2.39 -0.02 1.69 16 Total: -1.00 -75.76 300.84 4.07 -71.69 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.99 Total: 10.79 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.48 Total: -3.39 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -4.06 Total: -97.74 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.07 Total: -28.42 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.72 Total: 47.08 kcal Total: -75.76 4.07 -71.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706352221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.604 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds