Wall clock time and date at job start Mon Mar 30 2020 04:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46953 * 2 1 4 4 C 1.50705 * 109.47443 * 119.99702 * 2 1 3 5 5 N 1.34777 * 119.99758 * 300.00429 * 4 2 1 6 6 O 1.21276 * 119.99991 * 119.99932 * 4 2 1 7 7 N 1.46895 * 109.47409 * 240.00110 * 2 1 3 8 8 C 1.46909 * 110.99736 * 306.04256 * 7 2 1 9 9 C 1.46900 * 111.00379 * 69.99236 * 7 2 1 10 10 C 1.50700 * 109.47178 * 170.00283 * 9 7 2 11 11 C 1.38636 * 119.74858 * 90.00558 * 10 9 7 12 12 C 1.37616 * 120.24699 * 179.70329 * 11 10 9 13 13 C 1.40721 * 119.74615 * 0.27327 * 12 11 10 14 14 C 1.41398 * 120.24475 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99940 * 204.38459 * 14 13 12 16 16 C 1.39950 * 119.99737 * 24.38136 * 14 13 12 17 17 N 1.30819 * 120.00082 * 17.86893 * 16 14 13 18 18 Si 1.86800 * 119.99528 * 197.87014 * 16 14 13 19 19 H 1.48505 * 109.47342 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47335 * 120.00156 * 18 16 14 21 21 H 1.48508 * 109.46733 * 239.99831 * 18 16 14 22 22 C 1.40714 * 119.51046 * 359.97438 * 13 12 11 23 23 C 1.37620 * 119.74777 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47136 * 299.99845 * 1 2 3 25 25 H 1.08998 * 109.47452 * 60.00168 * 1 2 3 26 26 H 1.09005 * 109.46736 * 180.02562 * 1 2 3 27 27 H 0.97003 * 120.00180 * 359.97438 * 5 4 2 28 28 H 0.96995 * 120.00000 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.47143 * 183.95278 * 8 7 2 30 30 H 1.08997 * 109.47040 * 303.95325 * 8 7 2 31 31 H 1.08996 * 109.46828 * 63.95618 * 8 7 2 32 32 H 1.09006 * 109.46253 * 50.00538 * 9 7 2 33 33 H 1.08995 * 109.47131 * 290.00566 * 9 7 2 34 34 H 1.07993 * 119.87364 * 359.97245 * 11 10 9 35 35 H 1.08000 * 120.12884 * 180.29688 * 12 11 10 36 36 H 0.97001 * 119.99459 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.12730 * 180.02562 * 22 13 12 38 38 H 1.07994 * 119.87695 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7068 -0.2498 2.4546 6 8 2.7297 -1.6964 1.1193 7 7 2.0197 -0.6924 -1.1994 8 6 1.4344 -2.0355 -1.3077 9 6 1.7529 0.0972 -2.4091 10 6 2.4774 -0.5164 -3.5794 11 6 1.8471 -1.4819 -4.3492 12 6 2.4969 -2.0446 -5.4239 13 6 3.8081 -1.6405 -5.7367 14 6 4.4854 -2.2113 -6.8389 15 1 5.5650 -2.2227 -6.8623 16 6 3.7566 -2.7615 -7.8995 17 7 2.4952 -2.4522 -8.0563 18 14 4.5851 -3.9377 -9.0910 19 1 6.0052 -4.1222 -8.6975 20 1 3.8877 -5.2482 -9.0584 21 1 4.5214 -3.3770 -10.4647 22 6 4.4398 -0.6635 -4.9453 23 6 3.7708 -0.1144 -3.8752 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.1493 0.5390 2.5436 28 1 2.0304 -0.7068 3.2466 29 1 1.8665 -2.5521 -2.1647 30 1 1.6467 -2.5987 -0.3990 31 1 0.3557 -1.9521 -1.4398 32 1 2.1025 1.1189 -2.2603 33 1 0.6814 0.1051 -2.6087 34 1 0.8409 -1.7904 -4.1071 35 1 2.0024 -2.7931 -6.0252 36 1 1.9901 -2.8339 -8.7912 37 1 5.4457 -0.3458 -5.1766 38 1 4.2535 0.6359 -3.2666 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711158387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:09 Heat of formation + Delta-G solvation = -15.607509 kcal Electronic energy + Delta-G solvation = -19441.952734 eV Core-core repulsion = 16476.913881 eV Total energy + Delta-G solvation = -2965.038853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93898 -37.89722 -36.41222 -33.90071 -33.60660 -31.12306 -29.34306 -29.25080 -27.13157 -25.76063 -24.29214 -22.10737 -20.84382 -19.94612 -19.44383 -17.45201 -17.23251 -16.74512 -15.51563 -15.28533 -14.91653 -14.38923 -14.23857 -13.95254 -13.53338 -13.43996 -13.14249 -12.47040 -12.46132 -11.95658 -11.89303 -11.58302 -11.40087 -11.24844 -11.15893 -10.94079 -10.81760 -10.47985 -10.34178 -9.74627 -9.65546 -9.45680 -9.31644 -9.07530 -7.88586 -7.35786 -7.22577 -6.71904 -4.29298 2.70087 2.76000 3.10095 3.14709 3.16047 3.18390 3.46289 3.97139 4.33581 4.71961 4.82793 4.96514 5.06562 5.42989 5.53102 5.69053 5.79403 5.82562 5.86660 6.07842 6.18770 6.30092 6.43080 6.47351 6.60686 6.74124 7.00390 7.12658 7.17928 7.31656 7.43760 7.48937 7.50632 7.68502 7.95123 8.11993 8.20359 8.31518 8.36672 8.70162 8.95619 9.04199 10.22655 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042097 B = 0.003997 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.976292 B = 7002.755114 C = 7065.378352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.060 3.940 3 H 0.104 0.896 4 C 0.521 3.479 5 N -0.862 5.862 6 O -0.518 6.518 7 N -0.511 5.511 8 C 0.020 3.980 9 C 0.120 3.880 10 C -0.207 4.207 11 C -0.092 4.092 12 C -0.166 4.166 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.228 4.228 23 C -0.068 4.068 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.398 0.602 28 H 0.398 0.602 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.279 0.721 37 H 0.090 0.910 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 5.062 13.803 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.053 4.053 3 H 0.122 0.878 4 C 0.305 3.695 5 N -0.427 5.427 6 O -0.392 6.392 7 N -0.235 5.235 8 C -0.128 4.128 9 C -0.006 4.006 10 C -0.209 4.209 11 C -0.111 4.111 12 C -0.186 4.186 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.730 3.270 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.201 1.201 22 C -0.248 4.248 23 C -0.087 4.087 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.226 0.774 28 H 0.229 0.771 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.370 4.337 13.388 15.063 hybrid contribution -0.778 -0.139 -0.283 0.839 sum -6.147 4.199 13.106 15.073 Atomic orbital electron populations 1.22433 0.95848 1.03181 1.02832 1.21673 0.93799 0.99008 0.90832 0.87832 1.20651 0.79595 0.84461 0.84791 1.43915 1.56669 1.34074 1.08086 1.90736 1.36345 1.25723 1.86370 1.62077 1.58021 1.02930 1.00444 1.22552 0.95684 0.90570 1.04003 1.20798 0.96610 0.95497 0.87660 1.18788 0.96429 1.05971 0.99683 1.20502 0.97438 0.97087 0.96087 1.21272 0.96846 1.02818 0.97628 1.17623 0.91820 0.88547 0.91000 1.19634 0.94612 1.33178 1.01814 0.90472 1.25900 0.94672 0.95232 0.98302 1.69841 1.09054 1.35143 1.27949 0.86304 0.80770 0.80337 0.79558 1.18395 1.19742 1.20071 1.20964 1.00231 1.02629 1.00967 1.20315 0.93676 0.98555 0.96147 0.92091 0.91093 0.91569 0.77440 0.77121 0.90071 0.90794 0.96534 0.91822 0.95495 0.89943 0.86588 0.91045 0.89150 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 8.34 37.16 0.31 -1.52 16 2 C 0.06 0.75 2.73 -68.87 -0.19 0.56 16 3 H 0.10 1.13 7.93 -51.93 -0.41 0.72 16 4 C 0.52 6.83 7.12 -10.98 -0.08 6.75 16 5 N -0.86 -6.88 8.77 31.22 0.27 -6.60 16 6 O -0.52 -9.36 15.17 5.56 0.08 -9.28 16 7 N -0.51 -8.66 4.44 -237.73 -1.06 -9.71 16 8 C 0.02 0.34 8.08 60.07 0.49 0.82 16 9 C 0.12 2.11 4.68 -4.98 -0.02 2.09 16 10 C -0.21 -4.55 4.91 -104.33 -0.51 -5.06 16 11 C -0.09 -2.16 7.92 -39.66 -0.31 -2.47 16 12 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 13 C 0.11 3.07 5.58 -106.82 -0.60 2.48 16 14 C -0.46 -12.57 9.05 -37.74 -0.34 -12.91 16 15 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 16 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 17 N -0.79 -20.79 10.95 55.55 0.61 -20.18 16 18 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 C -0.23 -5.79 9.80 -38.87 -0.38 -6.17 16 23 C -0.07 -1.57 9.67 -39.66 -0.38 -1.96 16 24 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 25 H 0.07 0.73 6.91 -51.93 -0.36 0.37 16 26 H 0.07 0.73 6.42 -51.93 -0.33 0.40 16 27 H 0.40 1.89 8.25 -40.82 -0.34 1.55 16 28 H 0.40 2.78 8.93 -40.82 -0.36 2.42 16 29 H 0.08 1.61 6.16 -51.93 -0.32 1.29 16 30 H 0.07 1.31 5.82 -51.93 -0.30 1.01 16 31 H 0.02 0.25 6.46 -51.93 -0.34 -0.08 16 32 H 0.06 1.02 7.87 -51.93 -0.41 0.61 16 33 H 0.03 0.45 7.00 -51.93 -0.36 0.08 16 34 H 0.08 1.76 8.02 -52.49 -0.42 1.34 16 35 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 36 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -31.32 307.76 -8.00 -39.32 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.07 Total: 8.09 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.45 Total: -20.25 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.17 Total: -36.50 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.32 -8.00 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711158387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.710 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds