Wall clock time and date at job start Mon Mar 30 2020 04:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46953 * 2 1 4 4 C 1.50705 * 109.47443 * 119.99702 * 2 1 3 5 5 N 1.34777 * 119.99758 * 300.00429 * 4 2 1 6 6 O 1.21276 * 119.99991 * 119.99932 * 4 2 1 7 7 N 1.46895 * 109.47409 * 240.00110 * 2 1 3 8 8 C 1.46909 * 110.99736 * 306.04256 * 7 2 1 9 9 C 1.46900 * 111.00379 * 69.99236 * 7 2 1 10 10 C 1.50700 * 109.47178 * 170.00283 * 9 7 2 11 11 C 1.38636 * 119.74858 * 90.00558 * 10 9 7 12 12 C 1.37616 * 120.24699 * 179.70329 * 11 10 9 13 13 C 1.40721 * 119.74615 * 0.27327 * 12 11 10 14 14 C 1.41398 * 120.24475 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99940 * 204.38459 * 14 13 12 16 16 C 1.39950 * 119.99737 * 24.38136 * 14 13 12 17 17 N 1.30819 * 120.00082 * 17.86893 * 16 14 13 18 18 Si 1.86800 * 119.99528 * 197.87014 * 16 14 13 19 19 H 1.48505 * 109.47342 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47335 * 120.00156 * 18 16 14 21 21 H 1.48508 * 109.46733 * 239.99831 * 18 16 14 22 22 C 1.40714 * 119.51046 * 359.97438 * 13 12 11 23 23 C 1.37620 * 119.74777 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47136 * 299.99845 * 1 2 3 25 25 H 1.08998 * 109.47452 * 60.00168 * 1 2 3 26 26 H 1.09005 * 109.46736 * 180.02562 * 1 2 3 27 27 H 0.97003 * 120.00180 * 359.97438 * 5 4 2 28 28 H 0.96995 * 120.00000 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.47143 * 183.95278 * 8 7 2 30 30 H 1.08997 * 109.47040 * 303.95325 * 8 7 2 31 31 H 1.08996 * 109.46828 * 63.95618 * 8 7 2 32 32 H 1.09006 * 109.46253 * 50.00538 * 9 7 2 33 33 H 1.08995 * 109.47131 * 290.00566 * 9 7 2 34 34 H 1.07993 * 119.87364 * 359.97245 * 11 10 9 35 35 H 1.08000 * 120.12884 * 180.29688 * 12 11 10 36 36 H 0.97001 * 119.99459 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.12730 * 180.02562 * 22 13 12 38 38 H 1.07994 * 119.87695 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7068 -0.2498 2.4546 6 8 2.7297 -1.6964 1.1193 7 7 2.0197 -0.6924 -1.1994 8 6 1.4344 -2.0355 -1.3077 9 6 1.7529 0.0972 -2.4091 10 6 2.4774 -0.5164 -3.5794 11 6 1.8471 -1.4819 -4.3492 12 6 2.4969 -2.0446 -5.4239 13 6 3.8081 -1.6405 -5.7367 14 6 4.4854 -2.2113 -6.8389 15 1 5.5650 -2.2227 -6.8623 16 6 3.7566 -2.7615 -7.8995 17 7 2.4952 -2.4522 -8.0563 18 14 4.5851 -3.9377 -9.0910 19 1 6.0052 -4.1222 -8.6975 20 1 3.8877 -5.2482 -9.0584 21 1 4.5214 -3.3770 -10.4647 22 6 4.4398 -0.6635 -4.9453 23 6 3.7708 -0.1144 -3.8752 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.1493 0.5390 2.5436 28 1 2.0304 -0.7068 3.2466 29 1 1.8665 -2.5521 -2.1647 30 1 1.6467 -2.5987 -0.3990 31 1 0.3557 -1.9521 -1.4398 32 1 2.1025 1.1189 -2.2603 33 1 0.6814 0.1051 -2.6087 34 1 0.8409 -1.7904 -4.1071 35 1 2.0024 -2.7931 -6.0252 36 1 1.9901 -2.8339 -8.7912 37 1 5.4457 -0.3458 -5.1766 38 1 4.2535 0.6359 -3.2666 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711158387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:08 Heat of formation + Delta-G solvation = -38.656991 kcal Electronic energy + Delta-G solvation = -19442.952235 eV Core-core repulsion = 16476.913881 eV Total energy + Delta-G solvation = -2966.038353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02392 -39.57443 -37.82510 -35.55746 -34.73435 -32.62578 -31.16119 -30.70282 -28.73946 -27.04511 -25.73008 -23.53817 -22.74165 -21.50266 -20.63134 -19.19959 -18.31488 -17.78351 -17.15402 -16.62505 -16.16622 -15.85210 -15.70865 -15.45595 -14.94468 -14.83136 -14.52213 -14.23059 -13.78613 -13.53481 -13.21415 -13.07103 -12.90930 -12.70414 -12.61539 -12.41426 -12.35379 -12.15708 -12.01919 -11.38652 -11.22600 -10.97965 -10.72484 -10.53674 -9.34519 -9.21055 -9.01492 -8.62285 -6.30919 0.95924 1.19656 1.37437 1.49454 1.52924 1.72654 2.21502 2.49428 2.76091 3.25123 3.81569 4.02636 4.05247 4.16004 4.32671 4.35830 4.50907 4.57441 4.65482 4.70872 4.75051 4.87173 4.89238 5.07302 5.17586 5.21024 5.23636 5.40632 5.51426 5.74297 5.96121 5.99923 6.10750 6.13669 6.22383 6.33065 6.43225 6.60455 6.73717 6.97131 7.07649 7.46799 8.34926 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042097 B = 0.003997 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.976292 B = 7002.755114 C = 7065.378352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.058 3.942 3 H 0.129 0.871 4 C 0.518 3.482 5 N -0.835 5.835 6 O -0.578 6.578 7 N -0.534 5.534 8 C 0.030 3.970 9 C 0.127 3.873 10 C -0.195 4.195 11 C -0.093 4.093 12 C -0.191 4.191 13 C 0.079 3.921 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.261 1.261 20 H -0.264 1.264 21 H -0.263 1.263 22 C -0.247 4.247 23 C -0.074 4.074 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.417 0.583 28 H 0.407 0.593 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.287 0.713 37 H 0.092 0.908 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 6.496 15.506 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.053 4.053 3 H 0.146 0.854 4 C 0.303 3.697 5 N -0.400 5.400 6 O -0.456 6.456 7 N -0.258 5.258 8 C -0.118 4.118 9 C 0.001 3.999 10 C -0.196 4.196 11 C -0.111 4.111 12 C -0.211 4.211 13 C 0.077 3.923 14 C -0.534 4.534 15 H 0.089 0.911 16 C -0.179 4.179 17 N -0.452 5.452 18 Si 0.801 3.199 19 H -0.184 1.184 20 H -0.189 1.189 21 H -0.188 1.188 22 C -0.267 4.267 23 C -0.093 4.093 24 H 0.116 0.884 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.249 0.751 28 H 0.238 0.762 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.619 5.830 15.148 17.529 hybrid contribution -0.477 -0.461 -0.595 0.891 sum -7.095 5.369 14.554 17.058 Atomic orbital electron populations 1.22388 0.93412 1.02973 1.04831 1.21810 0.95665 0.99343 0.88531 0.85388 1.20820 0.78927 0.83743 0.86202 1.43650 1.55468 1.34111 1.06805 1.90726 1.39281 1.28370 1.87272 1.61849 1.59399 1.02846 1.01662 1.22355 0.96515 0.90908 1.02038 1.20727 0.96881 0.96051 0.86263 1.19312 0.96001 1.04082 1.00240 1.20736 0.98209 0.96981 0.95206 1.21243 0.97157 1.03668 0.99028 1.17959 0.92682 0.89712 0.91981 1.19846 0.94578 1.35792 1.03222 0.91105 1.26725 0.95253 0.96229 0.99645 1.69884 1.10340 1.36010 1.28954 0.85188 0.79406 0.77962 0.77303 1.18438 1.18873 1.18811 1.21173 1.00702 1.02894 1.01929 1.20657 0.94211 0.98782 0.95607 0.88383 0.90859 0.92847 0.75094 0.76190 0.93477 0.91557 0.94675 0.89500 0.93946 0.88072 0.88425 0.90227 0.88969 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.34 71.98 0.60 -2.17 16 2 C 0.06 1.26 2.73 44.17 0.12 1.38 16 3 H 0.13 2.16 7.93 -2.39 -0.02 2.14 16 4 C 0.52 12.29 7.12 87.66 0.62 12.92 16 5 N -0.83 -10.40 8.77 -173.53 -1.52 -11.92 16 6 O -0.58 -20.47 15.17 -3.02 -0.05 -20.51 16 7 N -0.53 -16.89 4.44 -906.04 -4.02 -20.91 16 8 C 0.03 1.01 8.08 127.69 1.03 2.04 16 9 C 0.13 4.08 4.68 85.56 0.40 4.48 16 10 C -0.19 -8.36 4.91 -19.67 -0.10 -8.46 16 11 C -0.09 -4.37 7.92 22.22 0.18 -4.19 16 12 C -0.19 -10.50 8.70 22.73 0.20 -10.31 16 13 C 0.08 4.50 5.58 -21.29 -0.12 4.38 16 14 C -0.50 -28.73 9.05 23.46 0.21 -28.52 16 15 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 16 C 0.04 1.89 5.14 85.26 0.44 2.33 16 17 N -0.83 -44.61 10.95 21.83 0.24 -44.37 16 18 Si 0.98 39.87 29.59 68.60 2.03 41.90 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 C -0.25 -12.89 9.80 22.73 0.22 -12.67 16 23 C -0.07 -3.38 9.67 22.22 0.21 -3.17 16 24 H 0.10 0.81 7.56 -2.39 -0.02 0.79 16 25 H 0.07 1.16 6.91 -2.39 -0.02 1.14 16 26 H 0.05 1.00 6.42 -2.38 -0.02 0.98 16 27 H 0.42 2.00 8.25 -92.71 -0.76 1.24 16 28 H 0.41 4.46 8.93 -92.71 -0.83 3.63 16 29 H 0.05 1.89 6.16 -2.39 -0.01 1.87 16 30 H 0.07 2.36 5.82 -2.39 -0.01 2.34 16 31 H 0.03 1.03 6.46 -2.39 -0.02 1.01 16 32 H 0.09 2.42 7.87 -2.38 -0.02 2.40 16 33 H 0.04 1.25 7.00 -2.39 -0.02 1.23 16 34 H 0.10 4.29 8.02 -2.91 -0.02 4.27 16 35 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 36 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 37 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -71.98 307.76 0.20 -71.78 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.50 Total: 25.99 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 4.02 Total: -41.96 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -5.31 Total: -77.20 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.51 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -71.98 0.20 -71.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711158387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.120 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds