Wall clock time and date at job start Mon Mar 30 2020 04:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47078 * 56.78481 * 3 2 1 5 5 C 1.37097 * 119.99732 * 82.97026 * 4 3 2 6 6 H 1.08001 * 120.00191 * 210.93921 * 5 4 3 7 7 C 1.38954 * 120.00116 * 30.93957 * 5 4 3 8 8 N 1.31406 * 119.99845 * 35.66884 * 7 5 4 9 9 Si 1.86800 * 119.99959 * 215.67261 * 7 5 4 10 10 H 1.48494 * 109.47122 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47656 * 59.99457 * 9 7 5 12 12 H 1.48502 * 109.47027 * 299.99594 * 9 7 5 13 13 C 1.34777 * 119.99857 * 262.97201 * 4 3 2 14 14 O 1.21295 * 119.99187 * 174.15265 * 13 4 3 15 15 C 1.50694 * 120.00384 * 354.15435 * 13 4 3 16 16 C 1.50657 * 110.00642 * 290.87965 * 15 13 4 17 17 C 1.54893 * 104.75045 * 279.45761 * 16 15 13 18 18 C 1.56275 * 105.71783 * 352.17850 * 17 16 15 19 19 C 1.51133 * 101.82940 * 335.63735 * 18 17 16 20 20 H 1.09001 * 109.38207 * 290.28227 * 19 18 17 21 21 N 1.44522 * 125.51968 * 156.18500 * 19 18 17 22 22 C 1.50161 * 102.96822 * 202.02552 * 21 19 18 23 23 C 1.50954 * 110.00936 * 71.42750 * 15 13 4 24 24 H 4.40650 * 5.51365 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.46980 * 296.79230 * 3 2 1 26 26 H 1.08994 * 109.46920 * 176.78558 * 3 2 1 27 27 H 0.96996 * 120.00380 * 5.72277 * 8 7 5 28 28 H 1.09005 * 110.46486 * 37.17823 * 16 15 13 29 29 H 1.09007 * 110.46395 * 159.75759 * 16 15 13 30 30 H 1.08999 * 109.82106 * 233.35127 * 17 16 15 31 31 H 1.09007 * 110.73260 * 111.48778 * 17 16 15 32 32 H 1.09004 * 110.95433 * 217.49927 * 18 17 16 33 33 H 1.09003 * 110.98494 * 93.78845 * 18 17 16 34 34 H 1.00898 * 110.99901 * 320.85865 * 21 19 18 35 35 H 1.08994 * 110.08289 * 267.76766 * 22 21 19 36 36 H 1.09004 * 110.08425 * 146.20049 * 22 21 19 37 37 H 1.09002 * 110.72516 * 200.88583 * 23 15 13 38 38 H 1.08994 * 110.72816 * 324.00127 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7558 -1.1556 5 6 3.2259 -0.1504 -2.3823 6 1 3.0901 -0.7312 -3.2826 7 6 3.4931 1.2106 -2.4673 8 7 4.3018 1.7768 -1.6000 9 14 2.7025 2.2353 -3.8143 10 1 3.1454 3.6468 -3.6869 11 1 1.2247 2.1671 -3.6854 12 1 3.1085 1.7064 -5.1413 13 6 3.4945 -2.0467 -1.0127 14 8 3.7977 -2.7030 -1.9867 15 6 3.5202 -2.6747 0.3569 16 6 4.6405 -2.0850 1.1734 17 6 5.9106 -2.8346 0.6999 18 6 5.4032 -3.9749 -0.2406 19 6 3.9884 -4.1759 0.2516 20 1 4.0111 -4.6275 1.2433 21 7 2.9023 -4.7351 -0.5206 22 6 1.6837 -4.2102 0.1825 23 6 2.1111 -2.8729 0.8607 24 1 -1.0499 0.0001 -0.0002 25 1 3.0095 -0.4624 0.9174 26 1 3.0088 1.0268 -0.0576 27 1 4.7768 1.2325 -0.9527 28 1 4.7476 -1.0211 0.9614 29 1 4.4631 -2.2466 2.2368 30 1 6.4308 -3.2592 1.5585 31 1 6.5735 -2.1637 0.1534 32 1 5.9944 -4.8811 -0.1086 33 1 5.4118 -3.6544 -1.2824 34 1 2.9349 -4.4133 -1.4763 35 1 1.3509 -4.9229 0.9370 36 1 0.8861 -4.0266 -0.5374 37 1 2.0996 -2.9701 1.9463 38 1 1.4683 -2.0526 0.5414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711310665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:15 Heat of formation + Delta-G solvation = 52.494071 kcal Electronic energy + Delta-G solvation = -21383.770027 eV Core-core repulsion = 18421.684280 eV Total energy + Delta-G solvation = -2962.085747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19434 -37.45216 -35.39530 -34.36735 -32.76272 -31.58049 -30.22193 -26.90749 -26.69300 -26.38172 -24.49194 -21.59237 -21.15664 -19.88136 -18.69636 -18.24324 -17.08243 -16.08957 -15.52224 -15.10573 -14.89475 -14.43630 -13.96944 -13.87420 -13.53128 -13.25785 -12.81157 -12.67305 -12.39082 -11.95652 -11.83727 -11.61788 -11.16363 -10.98404 -10.83152 -10.79814 -10.39436 -10.33341 -10.25009 -10.05068 -10.02093 -9.74317 -9.50443 -8.99688 -8.40627 -8.08415 -7.89063 -6.77473 -4.01245 3.18135 3.23621 3.33626 3.35731 3.51912 3.69262 4.06840 4.22356 4.63939 4.77548 4.99940 5.07258 5.18518 5.20577 5.35314 5.45705 5.53481 5.61838 5.69798 5.72247 5.89614 6.00594 6.03003 6.11013 6.16034 6.23664 6.32800 6.34932 6.38133 6.45450 6.51048 6.62875 6.83789 7.21393 7.78269 7.91029 8.07609 8.13092 8.48229 8.82403 9.27690 9.74232 10.46001 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.008558 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.673623 B = 3271.082038 C = 3667.192723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C 0.184 3.816 4 N -0.437 5.437 5 C -0.413 4.413 6 H 0.089 0.911 7 C 0.019 3.981 8 N -0.858 5.858 9 Si 1.060 2.940 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.478 3.522 14 O -0.568 6.568 15 C -0.143 4.143 16 C -0.102 4.102 17 C -0.116 4.116 18 C -0.123 4.123 19 C 0.091 3.909 20 H 0.077 0.923 21 N -0.660 5.660 22 C 0.043 3.957 23 C -0.142 4.142 24 H 0.212 0.788 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.275 0.725 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.358 0.642 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 -5.043 7.701 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.163 4.163 3 C 0.061 3.939 4 N -0.155 5.155 5 C -0.539 4.539 6 H 0.107 0.893 7 C -0.189 4.189 8 N -0.491 5.491 9 Si 0.886 3.114 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.207 1.207 13 C 0.267 3.733 14 O -0.452 6.452 15 C -0.148 4.148 16 C -0.140 4.140 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.021 4.021 20 H 0.095 0.905 21 N -0.293 5.293 22 C -0.087 4.087 23 C -0.181 4.181 24 H 0.228 0.772 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.182 0.818 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.456 -4.513 6.841 8.555 hybrid contribution -0.192 -0.390 0.524 0.681 sum -2.648 -4.903 7.365 9.235 Atomic orbital electron populations 1.24682 0.95662 1.02883 1.01770 1.23786 0.95031 0.98477 0.99031 1.18827 0.83537 1.01103 0.90445 1.43407 1.54532 1.09107 1.08450 1.20153 1.54313 0.94969 0.84460 0.89333 1.26259 0.94699 0.95527 1.02463 1.70806 1.18632 1.40777 1.18843 0.83643 0.76600 0.75980 0.75204 1.20454 1.21007 1.20741 1.19939 0.80674 0.83522 0.89162 1.90366 1.52820 1.61274 1.40741 1.22247 0.95744 1.00511 0.96285 1.21485 0.93662 1.00271 0.98572 1.22674 0.97035 0.97150 0.98581 1.22159 0.93784 0.97589 1.02561 1.22273 0.92687 0.89653 0.97523 0.90486 1.62716 1.01047 1.57446 1.08085 1.23531 0.93955 0.93493 0.97694 1.22453 0.95427 0.99738 1.00442 0.77153 0.89347 0.87196 0.91416 0.91185 0.91241 0.92007 0.91452 0.92154 0.88136 0.81846 0.90890 0.91899 0.91222 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.08 19.07 29.55 0.56 -3.51 16 2 C -0.16 -3.28 11.17 -37.12 -0.41 -3.69 16 3 C 0.18 3.92 4.26 -6.82 -0.03 3.90 16 4 N -0.44 -10.59 2.35 -117.93 -0.28 -10.86 16 5 C -0.41 -11.27 8.81 -14.93 -0.13 -11.40 16 6 H 0.09 2.62 7.70 -52.49 -0.40 2.22 16 7 C 0.02 0.51 4.69 -17.47 -0.08 0.43 16 8 N -0.86 -22.92 12.16 55.50 0.67 -22.25 16 9 Si 1.06 23.64 30.04 -169.99 -5.11 18.53 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.48 10.97 5.20 -10.99 -0.06 10.91 16 14 O -0.57 -14.63 11.57 5.54 0.06 -14.56 16 15 C -0.14 -2.59 0.26 -155.35 -0.04 -2.63 16 16 C -0.10 -1.65 5.17 -26.91 -0.14 -1.79 16 17 C -0.12 -1.82 6.80 -23.98 -0.16 -1.98 16 18 C -0.12 -2.13 6.33 -25.91 -0.16 -2.29 16 19 C 0.09 1.58 2.95 -67.41 -0.20 1.38 16 20 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 21 N -0.66 -12.08 7.53 -102.48 -0.77 -12.85 16 22 C 0.04 0.70 7.45 -0.44 0.00 0.70 16 23 C -0.14 -2.35 5.62 -26.20 -0.15 -2.50 16 24 H 0.21 2.78 7.80 -54.09 -0.42 2.36 16 25 H 0.09 1.65 4.47 -51.93 -0.23 1.42 16 26 H 0.11 2.54 5.47 -51.93 -0.28 2.26 16 27 H 0.28 7.32 7.68 -40.82 -0.31 7.01 16 28 H 0.07 1.24 6.32 -51.93 -0.33 0.91 16 29 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 2.10 5.75 -51.93 -0.30 1.80 16 34 H 0.36 7.50 6.16 -39.29 -0.24 7.26 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.51 4.19 -51.93 -0.22 1.29 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -29.23 293.42 -6.92 -36.15 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -4.92 Total: 13.92 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.01 Total: -12.49 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.37 Total: -45.96 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.06 Total: -14.56 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.11 Total: 18.53 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.23 -6.92 -36.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711310665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.642 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds