Wall clock time and date at job start Mon Mar 30 2020 04:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47078 * 56.78481 * 3 2 1 5 5 C 1.37097 * 119.99732 * 82.97026 * 4 3 2 6 6 H 1.08001 * 120.00191 * 210.93921 * 5 4 3 7 7 C 1.38954 * 120.00116 * 30.93957 * 5 4 3 8 8 N 1.31406 * 119.99845 * 35.66884 * 7 5 4 9 9 Si 1.86800 * 119.99959 * 215.67261 * 7 5 4 10 10 H 1.48494 * 109.47122 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47656 * 59.99457 * 9 7 5 12 12 H 1.48502 * 109.47027 * 299.99594 * 9 7 5 13 13 C 1.34777 * 119.99857 * 262.97201 * 4 3 2 14 14 O 1.21295 * 119.99187 * 174.15265 * 13 4 3 15 15 C 1.50694 * 120.00384 * 354.15435 * 13 4 3 16 16 C 1.50657 * 110.00642 * 290.87965 * 15 13 4 17 17 C 1.54893 * 104.75045 * 279.45761 * 16 15 13 18 18 C 1.56275 * 105.71783 * 352.17850 * 17 16 15 19 19 C 1.51133 * 101.82940 * 335.63735 * 18 17 16 20 20 H 1.09001 * 109.38207 * 290.28227 * 19 18 17 21 21 N 1.44522 * 125.51968 * 156.18500 * 19 18 17 22 22 C 1.50161 * 102.96822 * 202.02552 * 21 19 18 23 23 C 1.50954 * 110.00936 * 71.42750 * 15 13 4 24 24 H 4.40650 * 5.51365 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.46980 * 296.79230 * 3 2 1 26 26 H 1.08994 * 109.46920 * 176.78558 * 3 2 1 27 27 H 0.96996 * 120.00380 * 5.72277 * 8 7 5 28 28 H 1.09005 * 110.46486 * 37.17823 * 16 15 13 29 29 H 1.09007 * 110.46395 * 159.75759 * 16 15 13 30 30 H 1.08999 * 109.82106 * 233.35127 * 17 16 15 31 31 H 1.09007 * 110.73260 * 111.48778 * 17 16 15 32 32 H 1.09004 * 110.95433 * 217.49927 * 18 17 16 33 33 H 1.09003 * 110.98494 * 93.78845 * 18 17 16 34 34 H 1.00898 * 110.99901 * 320.85865 * 21 19 18 35 35 H 1.08994 * 110.08289 * 267.76766 * 22 21 19 36 36 H 1.09004 * 110.08425 * 146.20049 * 22 21 19 37 37 H 1.09002 * 110.72516 * 200.88583 * 23 15 13 38 38 H 1.08994 * 110.72816 * 324.00127 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7558 -1.1556 5 6 3.2259 -0.1504 -2.3823 6 1 3.0901 -0.7312 -3.2826 7 6 3.4931 1.2106 -2.4673 8 7 4.3018 1.7768 -1.6000 9 14 2.7025 2.2353 -3.8143 10 1 3.1454 3.6468 -3.6869 11 1 1.2247 2.1671 -3.6854 12 1 3.1085 1.7064 -5.1413 13 6 3.4945 -2.0467 -1.0127 14 8 3.7977 -2.7030 -1.9867 15 6 3.5202 -2.6747 0.3569 16 6 4.6405 -2.0850 1.1734 17 6 5.9106 -2.8346 0.6999 18 6 5.4032 -3.9749 -0.2406 19 6 3.9884 -4.1759 0.2516 20 1 4.0111 -4.6275 1.2433 21 7 2.9023 -4.7351 -0.5206 22 6 1.6837 -4.2102 0.1825 23 6 2.1111 -2.8729 0.8607 24 1 -1.0499 0.0001 -0.0002 25 1 3.0095 -0.4624 0.9174 26 1 3.0088 1.0268 -0.0576 27 1 4.7768 1.2325 -0.9527 28 1 4.7476 -1.0211 0.9614 29 1 4.4631 -2.2466 2.2368 30 1 6.4308 -3.2592 1.5585 31 1 6.5735 -2.1637 0.1534 32 1 5.9944 -4.8811 -0.1086 33 1 5.4118 -3.6544 -1.2824 34 1 2.9349 -4.4133 -1.4763 35 1 1.3509 -4.9229 0.9370 36 1 0.8861 -4.0266 -0.5374 37 1 2.0996 -2.9701 1.9463 38 1 1.4683 -2.0526 0.5414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711310665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:14 Heat of formation + Delta-G solvation = 33.178995 kcal Electronic energy + Delta-G solvation = -21384.607592 eV Core-core repulsion = 18421.684280 eV Total energy + Delta-G solvation = -2962.923311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.69691 -39.14188 -37.21415 -35.68299 -34.53495 -33.23130 -31.72053 -28.52369 -28.12313 -27.74151 -26.34088 -23.21922 -22.47592 -21.23459 -20.38209 -19.94367 -18.73315 -17.58665 -16.96719 -16.89808 -16.36783 -16.00202 -15.68129 -15.40952 -15.09642 -14.65478 -14.35337 -14.25084 -13.90388 -13.54686 -13.41539 -13.23108 -12.77019 -12.54275 -12.20633 -12.13695 -12.11323 -12.00074 -11.75917 -11.47612 -11.38814 -11.22029 -11.08188 -10.80393 -10.15666 -9.90391 -9.46411 -8.86006 -6.10101 1.42841 1.48319 1.66128 1.75699 1.88190 1.95658 2.38020 2.71946 2.83977 3.06191 3.58337 3.65310 3.73031 3.82907 4.01283 4.13751 4.17218 4.25347 4.35314 4.38082 4.44117 4.64625 4.71557 4.75666 4.82960 4.87870 4.96112 5.00212 5.05964 5.09529 5.20097 5.28980 5.45533 5.76395 5.85800 5.89925 6.36107 6.53219 6.68927 6.89249 7.34572 7.87769 8.36933 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.008558 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.673623 B = 3271.082038 C = 3667.192723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.222 4.222 3 C 0.194 3.806 4 N -0.452 5.452 5 C -0.438 4.438 6 H 0.051 0.949 7 C -0.009 4.009 8 N -0.867 5.867 9 Si 1.102 2.898 10 H -0.271 1.271 11 H -0.273 1.273 12 H -0.276 1.276 13 C 0.471 3.529 14 O -0.607 6.607 15 C -0.136 4.136 16 C -0.102 4.102 17 C -0.112 4.112 18 C -0.126 4.126 19 C 0.091 3.909 20 H 0.109 0.891 21 N -0.669 5.669 22 C 0.042 3.958 23 C -0.139 4.139 24 H 0.255 0.745 25 H 0.111 0.889 26 H 0.085 0.915 27 H 0.266 0.734 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.338 0.662 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.106 0.894 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 -5.569 10.174 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.223 4.223 3 C 0.071 3.929 4 N -0.170 5.170 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.215 4.215 8 N -0.500 5.500 9 Si 0.923 3.077 10 H -0.196 1.196 11 H -0.199 1.199 12 H -0.202 1.202 13 C 0.262 3.738 14 O -0.492 6.492 15 C -0.141 4.141 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.164 4.164 19 C -0.021 4.021 20 H 0.127 0.873 21 N -0.299 5.299 22 C -0.087 4.087 23 C -0.178 4.178 24 H 0.271 0.729 25 H 0.129 0.871 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.730 -5.042 9.353 11.261 hybrid contribution 0.185 -0.307 -0.266 0.446 sum -3.546 -5.349 9.087 11.124 Atomic orbital electron populations 1.25659 0.96468 0.99811 0.98778 1.23815 0.95438 1.01250 1.01795 1.18698 0.84802 0.99356 0.90049 1.43549 1.55297 1.09785 1.08333 1.19969 1.56005 0.95479 0.84997 0.93120 1.27386 0.94252 0.96100 1.03765 1.70889 1.19274 1.40448 1.19341 0.83101 0.76353 0.74991 0.73220 1.19585 1.19882 1.20174 1.20916 0.78880 0.82959 0.91018 1.90353 1.53872 1.62174 1.42831 1.22253 0.97592 1.00953 0.93331 1.21568 0.92945 0.98871 1.00601 1.22676 0.96789 0.96190 0.99319 1.22116 0.94909 0.99059 1.00305 1.22449 0.92131 0.88947 0.98553 0.87320 1.62789 1.02383 1.57528 1.07217 1.23657 0.92809 0.94257 0.97961 1.22484 0.93596 0.99156 1.02537 0.72895 0.87116 0.89709 0.92363 0.93324 0.87077 0.88017 0.93555 0.89911 0.92758 0.84163 0.87737 0.93109 0.87538 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.17 19.07 74.32 1.42 -4.75 16 2 C -0.22 -8.79 11.17 31.13 0.35 -8.45 16 3 C 0.19 8.36 4.26 84.57 0.36 8.72 16 4 N -0.45 -22.70 2.35 -645.40 -1.52 -24.21 16 5 C -0.44 -25.12 8.81 84.04 0.74 -24.38 16 6 H 0.05 3.22 7.70 -2.91 -0.02 3.20 16 7 C -0.01 -0.51 4.69 84.93 0.40 -0.11 16 8 N -0.87 -47.67 12.16 21.66 0.26 -47.40 16 9 Si 1.10 48.50 30.04 68.60 2.06 50.56 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.47 22.34 5.20 87.66 0.46 22.79 16 14 O -0.61 -33.08 11.57 -3.08 -0.04 -33.12 16 15 C -0.14 -4.76 0.26 -52.73 -0.01 -4.77 16 16 C -0.10 -3.09 5.17 30.48 0.16 -2.94 16 17 C -0.11 -3.30 6.80 32.38 0.22 -3.08 16 18 C -0.13 -4.27 6.33 31.12 0.20 -4.07 16 19 C 0.09 2.98 2.95 46.38 0.14 3.11 16 20 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 21 N -0.67 -23.84 7.53 -478.14 -3.60 -27.44 16 22 C 0.04 1.28 7.45 86.67 0.65 1.93 16 23 C -0.14 -4.22 5.62 30.94 0.17 -4.05 16 24 H 0.25 5.53 7.80 -4.42 -0.03 5.50 16 25 H 0.11 4.09 4.47 -2.39 -0.01 4.08 16 26 H 0.09 4.05 5.47 -2.39 -0.01 4.04 16 27 H 0.27 14.79 7.68 -92.71 -0.71 14.07 16 28 H 0.05 1.69 6.32 -2.38 -0.02 1.68 16 29 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.05 2.37 5.75 -2.39 -0.01 2.35 16 34 H 0.34 14.56 6.16 -89.70 -0.55 14.01 16 35 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.36 4.19 -2.39 -0.01 2.35 16 Total: -1.00 -68.02 293.42 2.99 -65.03 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: 0.58 Total: 36.64 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 5.24 Total: -20.05 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.85 Total: -99.06 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.04 Total: -33.12 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.06 Total: 50.56 kcal Total: -68.02 2.99 -65.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711310665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.214 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds