Wall clock time and date at job start Mon Mar 30 2020 04:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47119 * 253.20161 * 3 2 1 5 5 C 1.37104 * 120.00051 * 276.45551 * 4 3 2 6 6 H 1.07997 * 119.99895 * 188.82337 * 5 4 3 7 7 C 1.38950 * 119.99722 * 8.81750 * 5 4 3 8 8 N 1.31407 * 120.00444 * 8.62469 * 7 5 4 9 9 Si 1.86803 * 119.99844 * 188.61813 * 7 5 4 10 10 H 1.48503 * 109.47087 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46989 * 119.99950 * 9 7 5 12 12 H 1.48490 * 109.47393 * 240.00297 * 9 7 5 13 13 C 1.34772 * 120.00417 * 96.45347 * 4 3 2 14 14 O 1.21290 * 120.00670 * 185.32364 * 13 4 3 15 15 C 1.50703 * 119.99549 * 5.32154 * 13 4 3 16 16 C 1.54110 * 111.69226 * 58.35120 * 15 13 4 17 17 C 1.54889 * 104.15778 * 97.69087 * 16 15 13 18 18 C 1.54819 * 102.90382 * 38.36483 * 17 16 15 19 19 C 1.54472 * 104.33400 * 322.44612 * 18 17 16 20 20 H 1.08998 * 111.70190 * 260.71372 * 19 18 17 21 21 N 1.47921 * 108.81788 * 137.37280 * 19 18 17 22 22 C 1.48475 * 105.99222 * 220.41578 * 21 19 18 23 23 C 1.54445 * 112.39813 * 295.42434 * 15 13 4 24 24 H 4.40645 * 5.51385 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46856 * 133.20285 * 3 2 1 26 26 H 1.08997 * 109.47295 * 13.20391 * 3 2 1 27 27 H 0.96998 * 120.00287 * 180.02562 * 8 7 5 28 28 H 1.09004 * 110.49093 * 339.02390 * 16 15 13 29 29 H 1.08996 * 110.60699 * 216.41777 * 16 15 13 30 30 H 1.09001 * 110.75499 * 156.76948 * 17 16 15 31 31 H 1.08993 * 110.75637 * 279.95772 * 17 16 15 32 32 H 1.09009 * 110.44254 * 81.02897 * 18 17 16 33 33 H 1.08999 * 110.44532 * 203.55280 * 18 17 16 34 34 H 1.00900 * 111.00015 * 341.03476 * 21 19 18 35 35 H 1.09001 * 110.67102 * 157.64382 * 22 21 19 36 36 H 1.09005 * 110.66890 * 280.61588 * 22 21 19 37 37 H 1.08994 * 110.72534 * 19.00185 * 23 15 13 38 38 H 1.09005 * 110.71847 * 142.27964 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.4000 1.3222 5 6 3.2363 1.7292 1.6426 6 1 3.7267 2.0281 2.5572 7 6 2.7087 2.6917 0.7905 8 7 1.9669 2.3288 -0.2317 9 14 3.0539 4.5016 1.0981 10 1 3.9090 4.6445 2.3038 11 1 3.7554 5.0784 -0.0769 12 1 1.7724 5.2206 1.3116 13 6 3.4829 -0.5390 2.2238 14 8 3.7947 -0.2129 3.3497 15 6 3.4855 -1.9945 1.8331 16 6 4.4263 -2.2630 0.6424 17 6 5.7320 -2.7755 1.2994 18 6 5.2117 -3.6553 2.4622 19 6 3.9727 -2.8985 2.9897 20 1 4.2061 -2.3142 3.8798 21 7 2.8938 -3.8752 3.2541 22 6 1.6387 -3.2349 2.7859 23 6 2.0727 -2.5130 1.4856 24 1 -1.0501 0.0001 -0.0002 25 1 3.0090 0.7044 -0.7491 26 1 3.0099 -0.9996 -0.2347 27 1 1.5990 3.0007 -0.8267 28 1 4.6133 -1.3429 0.0888 29 1 4.0057 -3.0240 -0.0149 30 1 6.3115 -3.3709 0.5938 31 1 6.3253 -1.9440 1.6796 32 1 4.9260 -4.6413 2.0953 33 1 5.9687 -3.7428 3.2416 34 1 3.0622 -4.7414 2.7647 35 1 0.8791 -3.9872 2.5730 36 1 1.2737 -2.5193 3.5227 37 1 1.4016 -1.6837 1.2624 38 1 2.1133 -3.2131 0.6511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711310673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:18 Heat of formation + Delta-G solvation = 49.308126 kcal Electronic energy + Delta-G solvation = -21121.103597 eV Core-core repulsion = 18158.879697 eV Total energy + Delta-G solvation = -2962.223900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.47823 -37.54176 -35.25278 -34.00167 -32.27986 -31.33112 -30.45553 -27.21740 -26.51291 -25.84657 -24.63008 -21.68415 -20.74673 -20.37906 -18.14906 -17.91679 -16.60388 -15.91704 -15.77878 -15.38428 -14.52937 -14.19347 -13.95749 -13.68259 -13.30538 -13.27502 -12.61714 -12.53964 -12.42612 -12.01959 -11.45212 -11.34492 -11.12223 -10.89840 -10.77058 -10.64340 -10.52907 -10.44563 -10.35629 -10.26076 -10.06440 -9.43381 -9.18747 -8.67427 -8.47937 -8.15964 -7.94377 -6.25939 -3.86582 3.11989 3.23629 3.30143 3.67002 3.89709 4.11873 4.19870 4.42064 4.72300 4.82738 5.06434 5.13602 5.21380 5.38945 5.45059 5.50295 5.64966 5.68917 5.76047 5.79056 5.89466 5.98574 6.04533 6.13803 6.19517 6.33040 6.38635 6.48210 6.50240 6.57299 6.76043 6.96713 7.07481 7.15907 7.53711 7.66963 8.01134 8.43234 8.89730 9.12679 9.36345 9.89688 10.66808 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.007713 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.082497 B = 3629.335900 C = 4041.157122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.085 4.085 3 C 0.219 3.781 4 N -0.442 5.442 5 C -0.301 4.301 6 H 0.105 0.895 7 C 0.025 3.975 8 N -0.877 5.877 9 Si 0.929 3.071 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.470 3.530 14 O -0.581 6.581 15 C -0.097 4.097 16 C -0.118 4.118 17 C -0.123 4.123 18 C -0.126 4.126 19 C 0.087 3.913 20 H 0.112 0.888 21 N -0.671 5.671 22 C 0.045 3.955 23 C -0.156 4.156 24 H 0.196 0.804 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.267 0.733 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.328 0.672 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -10.227 -2.647 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.087 4.087 3 C 0.096 3.904 4 N -0.160 5.160 5 C -0.429 4.429 6 H 0.123 0.877 7 C -0.176 4.176 8 N -0.517 5.517 9 Si 0.756 3.244 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.258 3.742 14 O -0.465 6.465 15 C -0.102 4.102 16 C -0.156 4.156 17 C -0.161 4.161 18 C -0.164 4.164 19 C -0.023 4.023 20 H 0.130 0.870 21 N -0.298 5.298 22 C -0.084 4.084 23 C -0.195 4.195 24 H 0.213 0.787 25 H 0.137 0.863 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.002 -9.795 -1.499 10.109 hybrid contribution -0.324 1.072 -1.142 1.600 sum 1.678 -8.723 -2.641 9.267 Atomic orbital electron populations 1.24197 0.95338 1.08341 1.02575 1.22995 0.94194 0.93660 0.97821 1.18896 0.84454 0.99043 0.88015 1.43671 1.55472 1.05729 1.11090 1.19839 1.35057 0.80016 1.07973 0.87696 1.25282 0.95598 1.00526 0.96226 1.69965 1.32088 1.33419 1.16267 0.85798 0.78188 0.81980 0.78401 1.19315 1.20678 1.20848 1.19485 0.83835 0.85731 0.85191 1.90496 1.54096 1.81643 1.20218 1.22295 0.96063 0.95278 0.96606 1.22693 0.95082 1.01476 0.96320 1.22509 0.97245 0.99319 0.97002 1.22707 0.97744 0.97943 0.97994 1.23060 0.90032 0.91487 0.97703 0.87030 1.62815 1.02503 1.05406 1.59119 1.23069 0.92490 0.97755 0.95101 1.23498 0.96248 1.01474 0.98318 0.78709 0.86261 0.91413 0.92192 0.90304 0.91273 0.91694 0.91074 0.91726 0.91351 0.85541 0.91242 0.90277 0.88830 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.00 18.97 29.55 0.56 -5.44 16 2 C -0.08 -1.90 8.62 -37.12 -0.32 -2.22 16 3 C 0.22 4.83 4.04 -6.83 -0.03 4.80 16 4 N -0.44 -11.01 2.54 -117.94 -0.30 -11.31 16 5 C -0.30 -8.24 9.47 -14.93 -0.14 -8.38 16 6 H 0.11 3.04 7.24 -52.49 -0.38 2.66 16 7 C 0.03 0.65 5.29 -17.47 -0.09 0.56 16 8 N -0.88 -22.51 8.13 55.50 0.45 -22.06 16 9 Si 0.93 20.71 29.56 -169.99 -5.03 15.68 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.47 11.27 6.48 -10.99 -0.07 11.20 16 14 O -0.58 -16.00 15.07 5.55 0.08 -15.92 16 15 C -0.10 -1.79 0.46 -153.44 -0.07 -1.86 16 16 C -0.12 -1.83 4.46 -25.15 -0.11 -1.95 16 17 C -0.12 -1.71 6.89 -24.78 -0.17 -1.88 16 18 C -0.13 -1.71 6.49 -25.00 -0.16 -1.87 16 19 C 0.09 1.49 3.85 -65.50 -0.25 1.24 16 20 H 0.11 2.31 6.71 -51.93 -0.35 1.97 16 21 N -0.67 -10.31 7.41 -101.98 -0.76 -11.06 16 22 C 0.05 0.72 7.55 -1.93 -0.01 0.70 16 23 C -0.16 -2.64 5.13 -24.95 -0.13 -2.77 16 24 H 0.20 3.40 7.80 -54.09 -0.42 2.98 16 25 H 0.12 2.82 6.23 -51.93 -0.32 2.50 16 26 H 0.07 1.28 3.69 -51.93 -0.19 1.09 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.08 1.33 6.02 -51.93 -0.31 1.02 16 29 H 0.07 0.92 7.22 -51.93 -0.38 0.55 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.75 7.24 -51.92 -0.38 0.37 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.33 4.21 7.77 -39.29 -0.31 3.90 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.09 1.82 4.17 -51.93 -0.22 1.60 16 38 H 0.07 0.99 7.22 -51.93 -0.38 0.61 16 LS Contribution 292.09 15.07 4.40 4.40 Total: -1.00 -29.93 292.09 -7.02 -36.95 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.87 Total: 11.18 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.00 Total: -7.87 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.60 Total: -44.43 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.08 Total: -15.92 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.93 -7.02 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711310673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.262 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds