Wall clock time and date at job start Mon Mar 30 2020 04:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47119 * 253.20161 * 3 2 1 5 5 C 1.37104 * 120.00051 * 276.45551 * 4 3 2 6 6 H 1.07997 * 119.99895 * 188.82337 * 5 4 3 7 7 C 1.38950 * 119.99722 * 8.81750 * 5 4 3 8 8 N 1.31407 * 120.00444 * 8.62469 * 7 5 4 9 9 Si 1.86803 * 119.99844 * 188.61813 * 7 5 4 10 10 H 1.48503 * 109.47087 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46989 * 119.99950 * 9 7 5 12 12 H 1.48490 * 109.47393 * 240.00297 * 9 7 5 13 13 C 1.34772 * 120.00417 * 96.45347 * 4 3 2 14 14 O 1.21290 * 120.00670 * 185.32364 * 13 4 3 15 15 C 1.50703 * 119.99549 * 5.32154 * 13 4 3 16 16 C 1.54110 * 111.69226 * 58.35120 * 15 13 4 17 17 C 1.54889 * 104.15778 * 97.69087 * 16 15 13 18 18 C 1.54819 * 102.90382 * 38.36483 * 17 16 15 19 19 C 1.54472 * 104.33400 * 322.44612 * 18 17 16 20 20 H 1.08998 * 111.70190 * 260.71372 * 19 18 17 21 21 N 1.47921 * 108.81788 * 137.37280 * 19 18 17 22 22 C 1.48475 * 105.99222 * 220.41578 * 21 19 18 23 23 C 1.54445 * 112.39813 * 295.42434 * 15 13 4 24 24 H 4.40645 * 5.51385 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46856 * 133.20285 * 3 2 1 26 26 H 1.08997 * 109.47295 * 13.20391 * 3 2 1 27 27 H 0.96998 * 120.00287 * 180.02562 * 8 7 5 28 28 H 1.09004 * 110.49093 * 339.02390 * 16 15 13 29 29 H 1.08996 * 110.60699 * 216.41777 * 16 15 13 30 30 H 1.09001 * 110.75499 * 156.76948 * 17 16 15 31 31 H 1.08993 * 110.75637 * 279.95772 * 17 16 15 32 32 H 1.09009 * 110.44254 * 81.02897 * 18 17 16 33 33 H 1.08999 * 110.44532 * 203.55280 * 18 17 16 34 34 H 1.00900 * 111.00015 * 341.03476 * 21 19 18 35 35 H 1.09001 * 110.67102 * 157.64382 * 22 21 19 36 36 H 1.09005 * 110.66890 * 280.61588 * 22 21 19 37 37 H 1.08994 * 110.72534 * 19.00185 * 23 15 13 38 38 H 1.09005 * 110.71847 * 142.27964 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.4000 1.3222 5 6 3.2363 1.7292 1.6426 6 1 3.7267 2.0281 2.5572 7 6 2.7087 2.6917 0.7905 8 7 1.9669 2.3288 -0.2317 9 14 3.0539 4.5016 1.0981 10 1 3.9090 4.6445 2.3038 11 1 3.7554 5.0784 -0.0769 12 1 1.7724 5.2206 1.3116 13 6 3.4829 -0.5390 2.2238 14 8 3.7947 -0.2129 3.3497 15 6 3.4855 -1.9945 1.8331 16 6 4.4263 -2.2630 0.6424 17 6 5.7320 -2.7755 1.2994 18 6 5.2117 -3.6553 2.4622 19 6 3.9727 -2.8985 2.9897 20 1 4.2061 -2.3142 3.8798 21 7 2.8938 -3.8752 3.2541 22 6 1.6387 -3.2349 2.7859 23 6 2.0727 -2.5130 1.4856 24 1 -1.0501 0.0001 -0.0002 25 1 3.0090 0.7044 -0.7491 26 1 3.0099 -0.9996 -0.2347 27 1 1.5990 3.0007 -0.8267 28 1 4.6133 -1.3429 0.0888 29 1 4.0057 -3.0240 -0.0149 30 1 6.3115 -3.3709 0.5938 31 1 6.3253 -1.9440 1.6796 32 1 4.9260 -4.6413 2.0953 33 1 5.9687 -3.7428 3.2416 34 1 3.0622 -4.7414 2.7647 35 1 0.8791 -3.9872 2.5730 36 1 1.2737 -2.5193 3.5227 37 1 1.4016 -1.6837 1.2624 38 1 2.1133 -3.2131 0.6511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711310673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:18 Heat of formation + Delta-G solvation = 29.034470 kcal Electronic energy + Delta-G solvation = -21121.982729 eV Core-core repulsion = 18158.879697 eV Total energy + Delta-G solvation = -2963.103031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.97778 -39.21919 -37.18977 -35.20954 -34.11298 -33.11031 -31.93556 -28.62862 -28.21087 -27.12603 -26.50206 -23.07983 -22.29663 -21.62130 -19.76456 -19.68261 -18.38335 -17.54157 -17.15895 -17.06734 -16.14403 -15.91420 -15.51991 -15.21459 -14.69424 -14.67747 -14.29057 -14.15790 -13.89529 -13.48576 -13.25733 -12.89547 -12.65519 -12.49643 -12.22752 -12.21316 -12.06868 -11.86917 -11.75769 -11.60393 -11.35194 -11.31903 -10.91430 -10.43960 -10.27951 -9.89382 -9.49672 -8.24382 -5.93653 1.31268 1.37608 1.50352 1.87912 2.11845 2.33682 2.44829 3.04842 3.12787 3.18179 3.58254 3.73368 3.90191 3.94841 4.16210 4.20279 4.27474 4.38354 4.46478 4.51061 4.63554 4.70712 4.82335 4.90192 4.95335 5.06801 5.10732 5.14996 5.19093 5.21655 5.30079 5.41964 5.47034 5.50810 5.77731 6.03241 6.45581 6.62379 7.13210 7.20337 7.43688 7.98279 8.64439 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.007713 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.082497 B = 3629.335900 C = 4041.157122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.121 4.121 3 C 0.225 3.775 4 N -0.452 5.452 5 C -0.342 4.342 6 H 0.072 0.928 7 C -0.001 4.001 8 N -0.878 5.878 9 Si 0.988 3.012 10 H -0.279 1.279 11 H -0.264 1.264 12 H -0.278 1.278 13 C 0.457 3.543 14 O -0.633 6.633 15 C -0.097 4.097 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.115 4.115 19 C 0.085 3.915 20 H 0.063 0.937 21 N -0.668 5.668 22 C 0.048 3.952 23 C -0.152 4.152 24 H 0.227 0.773 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.271 0.729 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.350 0.650 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -12.416 -4.595 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.122 4.122 3 C 0.104 3.896 4 N -0.169 5.169 5 C -0.470 4.470 6 H 0.090 0.910 7 C -0.203 4.203 8 N -0.517 5.517 9 Si 0.812 3.188 10 H -0.204 1.204 11 H -0.189 1.189 12 H -0.204 1.204 13 C 0.247 3.753 14 O -0.521 6.521 15 C -0.102 4.102 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.026 4.026 20 H 0.081 0.919 21 N -0.298 5.298 22 C -0.082 4.082 23 C -0.191 4.191 24 H 0.244 0.756 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.169 0.831 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.548 -12.012 -3.492 12.605 hybrid contribution -0.246 1.778 -0.493 1.862 sum 1.302 -10.234 -3.986 11.059 Atomic orbital electron populations 1.25013 0.96285 1.06875 1.01044 1.23252 0.94796 0.94994 0.99208 1.18869 0.84718 1.00116 0.85929 1.43853 1.55523 1.05180 1.12347 1.19685 1.37189 0.82140 1.07981 0.91039 1.25922 0.94901 1.03665 0.95769 1.70099 1.31220 1.34414 1.15956 0.84956 0.77961 0.77580 0.78311 1.20425 1.18876 1.20379 1.20592 0.82199 0.88174 0.84375 1.90449 1.56028 1.83129 1.22461 1.22291 0.98313 0.91117 0.98502 1.22735 0.95423 1.01848 0.95410 1.22502 0.96491 0.99003 0.97682 1.22672 0.95872 0.98829 0.97881 1.22868 0.92438 0.91811 0.95484 0.91905 1.62627 1.01632 1.05750 1.59763 1.23009 0.93518 0.97976 0.93649 1.23505 0.94326 1.01310 0.99932 0.75594 0.88261 0.88147 0.91854 0.92151 0.87510 0.87960 0.93734 0.88177 0.90959 0.83073 0.87610 0.93935 0.91423 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.11 18.97 74.32 1.41 -9.70 16 2 C -0.12 -5.37 8.62 31.13 0.27 -5.10 16 3 C 0.23 10.04 4.04 84.58 0.34 10.39 16 4 N -0.45 -23.50 2.54 -645.43 -1.64 -25.14 16 5 C -0.34 -19.73 9.47 84.04 0.80 -18.93 16 6 H 0.07 4.49 7.24 -2.91 -0.02 4.47 16 7 C 0.00 -0.06 5.29 84.93 0.45 0.39 16 8 N -0.88 -45.24 8.13 21.66 0.18 -45.06 16 9 Si 0.99 43.23 29.56 68.60 2.03 45.25 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 13 C 0.46 23.01 6.48 87.66 0.57 23.58 16 14 O -0.63 -37.65 15.07 -3.06 -0.05 -37.69 16 15 C -0.10 -3.53 0.46 -51.49 -0.02 -3.56 16 16 C -0.12 -3.35 4.46 31.62 0.14 -3.21 16 17 C -0.12 -3.01 6.89 31.86 0.22 -2.80 16 18 C -0.11 -2.80 6.49 31.72 0.21 -2.59 16 19 C 0.08 2.86 3.85 45.79 0.18 3.04 16 20 H 0.06 2.76 6.71 -2.39 -0.02 2.74 16 21 N -0.67 -19.13 7.41 -476.57 -3.53 -22.66 16 22 C 0.05 1.44 7.55 86.66 0.65 2.10 16 23 C -0.15 -4.82 5.13 31.75 0.16 -4.66 16 24 H 0.23 7.30 7.80 -4.41 -0.03 7.26 16 25 H 0.10 4.78 6.23 -2.39 -0.01 4.76 16 26 H 0.10 3.70 3.69 -2.39 -0.01 3.69 16 27 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 28 H 0.06 1.98 6.02 -2.38 -0.01 1.96 16 29 H 0.11 2.30 7.22 -2.39 -0.02 2.28 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.78 7.24 -2.38 -0.02 1.76 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.35 7.46 7.77 -89.69 -0.70 6.76 16 35 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.04 1.57 8.14 -2.38 -0.02 1.56 16 37 H 0.07 2.56 4.17 -2.39 -0.01 2.55 16 38 H 0.11 2.56 7.22 -2.38 -0.02 2.54 16 Total: -1.00 -70.26 292.09 2.74 -67.51 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.38 Total: 28.85 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.37 Total: -11.06 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -5.00 Total: -92.86 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.05 Total: -37.69 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -70.26 2.74 -67.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711310673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.548 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds