Wall clock time and date at job start Mon Mar 30 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46627 * 235.63443 * 3 2 1 5 5 C 1.37099 * 119.99230 * 86.92607 * 4 3 2 6 6 H 1.08008 * 119.99504 * 165.16815 * 5 4 3 7 7 C 1.38946 * 120.00705 * 345.16891 * 5 4 3 8 8 N 1.31413 * 119.99711 * 1.40327 * 7 5 4 9 9 Si 1.86801 * 120.00436 * 181.40763 * 7 5 4 10 10 H 1.48495 * 109.46895 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47036 * 119.99829 * 9 7 5 12 12 H 1.48503 * 109.46551 * 239.99773 * 9 7 5 13 13 C 1.34767 * 120.00309 * 266.92207 * 4 3 2 14 14 O 1.21296 * 120.00400 * 355.36697 * 13 4 3 15 15 C 1.50704 * 120.00041 * 175.64521 * 13 4 3 16 16 C 1.54109 * 111.68899 * 303.60685 * 15 13 4 17 17 C 1.54044 * 104.56331 * 261.14149 * 16 15 13 18 18 C 1.54827 * 103.11505 * 322.61671 * 17 16 15 19 19 C 1.54265 * 104.42607 * 37.16675 * 18 17 16 20 20 H 1.08995 * 111.36098 * 98.75725 * 19 18 17 21 21 N 1.47920 * 108.71331 * 222.44909 * 19 18 17 22 22 C 1.48480 * 105.99798 * 139.43518 * 21 19 18 23 23 C 1.54442 * 111.71559 * 66.98313 * 15 13 4 24 24 H 4.40642 * 5.51322 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.46771 * 115.64267 * 3 2 1 26 26 H 1.08988 * 109.47372 * 355.63924 * 3 2 1 27 27 H 0.97000 * 119.99954 * 180.02562 * 8 7 5 28 28 H 1.09003 * 110.49772 * 20.97557 * 16 15 13 29 29 H 1.09003 * 110.49524 * 143.63170 * 16 15 13 30 30 H 1.09006 * 111.11812 * 203.92871 * 17 16 15 31 31 H 1.08996 * 110.19320 * 80.87854 * 17 16 15 32 32 H 1.08995 * 110.44215 * 278.42656 * 18 17 16 33 33 H 1.09004 * 110.43721 * 155.89806 * 18 17 16 34 34 H 1.00908 * 111.00131 * 260.05348 * 21 19 18 35 35 H 1.09001 * 110.66756 * 79.21465 * 22 21 19 36 36 H 1.08991 * 110.67123 * 202.18998 * 22 21 19 37 37 H 1.09004 * 110.72273 * 217.34202 * 23 15 13 38 38 H 1.08995 * 110.72739 * 340.61796 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7806 1.1402 5 6 3.3026 0.1786 2.3604 6 1 3.8779 0.6711 3.1305 7 6 2.7334 -1.0648 2.6064 8 7 2.0566 -1.6763 1.6604 9 14 2.9300 -1.8671 4.2818 10 1 3.7300 -0.9805 5.1644 11 1 1.5911 -2.0890 4.8846 12 1 3.6257 -3.1701 4.1279 13 6 3.4170 2.0896 0.9896 14 8 3.3487 2.6026 -0.1074 15 6 3.8246 2.9145 2.1831 16 6 2.7665 2.8586 3.3022 17 6 1.9543 4.1565 3.1326 18 6 3.0298 5.1933 2.7259 19 6 3.9972 4.4073 1.8171 20 1 3.7848 4.5854 0.7630 21 7 5.3854 4.7771 2.1694 22 6 6.1681 3.5161 2.1273 23 6 5.1969 2.4757 2.7394 24 1 -1.0501 -0.0003 -0.0002 25 1 3.0091 0.4455 -0.9264 26 1 3.0098 -1.0237 0.0781 27 1 1.6589 -2.5442 1.8322 28 1 2.1344 1.9782 3.1862 29 1 3.2461 2.8587 4.2811 30 1 1.4743 4.4444 4.0680 31 1 1.2144 4.0366 2.3413 32 1 3.5525 5.5652 3.6071 33 1 2.5753 6.0173 2.1757 34 1 5.7555 5.4542 1.5192 35 1 6.4169 3.2519 1.0994 36 1 7.0719 3.6038 2.7301 37 1 5.2077 2.5319 3.8279 38 1 5.4463 1.4699 2.4016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711310678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:20 Heat of formation + Delta-G solvation = 39.062084 kcal Electronic energy + Delta-G solvation = -21099.998804 eV Core-core repulsion = 18137.330603 eV Total energy + Delta-G solvation = -2962.668201 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18615 -37.49479 -35.13802 -33.91992 -31.94177 -31.65880 -30.38126 -27.20414 -26.37944 -25.82910 -24.61825 -21.27701 -20.47756 -19.94074 -18.59721 -17.68520 -16.86266 -15.95779 -15.43227 -14.98002 -14.41526 -14.29361 -13.93830 -13.77036 -13.46584 -12.95731 -12.56018 -12.24785 -12.00799 -11.66463 -11.49049 -11.22827 -11.21476 -11.07898 -10.75542 -10.55736 -10.45793 -10.24556 -10.17427 -10.13885 -9.84316 -9.48613 -9.25833 -8.63817 -8.34841 -8.19084 -7.97596 -6.33497 -3.99734 3.04835 3.16343 3.18876 3.67769 3.89482 4.10739 4.31430 4.55178 4.79451 5.00043 5.12670 5.17972 5.40820 5.57531 5.66141 5.73417 5.82026 5.98484 6.04891 6.10500 6.15546 6.19041 6.29470 6.40075 6.45333 6.53719 6.62461 6.69021 6.73805 6.86119 7.01183 7.11812 7.21975 7.25611 7.35784 7.63502 7.69310 8.32158 8.97639 9.01259 9.41026 9.79865 10.58391 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.008980 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.570546 B = 3117.239461 C = 3614.326507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.084 4.084 3 C 0.233 3.767 4 N -0.438 5.438 5 C -0.331 4.331 6 H 0.111 0.889 7 C 0.034 3.966 8 N -0.866 5.866 9 Si 0.921 3.079 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.474 3.526 14 O -0.606 6.606 15 C -0.063 4.063 16 C -0.107 4.107 17 C -0.126 4.126 18 C -0.107 4.107 19 C 0.075 3.925 20 H 0.077 0.923 21 N -0.666 5.666 22 C 0.037 3.963 23 C -0.109 4.109 24 H 0.196 0.804 25 H 0.061 0.939 26 H 0.128 0.872 27 H 0.268 0.732 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.329 0.671 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 5.671 3.262 7.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.085 4.085 3 C 0.110 3.890 4 N -0.154 5.154 5 C -0.458 4.458 6 H 0.128 0.872 7 C -0.170 4.170 8 N -0.504 5.504 9 Si 0.748 3.252 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.262 3.738 14 O -0.493 6.493 15 C -0.066 4.066 16 C -0.145 4.145 17 C -0.164 4.164 18 C -0.145 4.145 19 C -0.035 4.035 20 H 0.095 0.905 21 N -0.294 5.294 22 C -0.092 4.092 23 C -0.147 4.147 24 H 0.213 0.787 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.001 5.717 3.446 7.318 hybrid contribution -0.259 -0.840 -0.045 0.880 sum 2.742 4.877 3.400 6.547 Atomic orbital electron populations 1.24173 0.95327 1.06533 1.05193 1.23228 0.94345 0.95086 0.95875 1.18448 0.84020 0.98622 0.87862 1.43640 1.55693 1.06304 1.09800 1.19970 1.32520 1.02219 0.91100 0.87166 1.25325 0.95431 0.97230 0.98999 1.70006 1.33168 1.15666 1.31573 0.85928 0.78241 0.79241 0.81787 1.19136 1.20627 1.20635 1.19769 0.82636 0.82207 0.89140 1.90502 1.59979 1.71641 1.27195 1.21619 0.96452 0.93655 0.94909 1.22338 0.97180 0.98645 0.96294 1.22371 0.97725 0.95647 1.00609 1.22334 0.95742 0.97070 0.99356 1.22825 0.88644 0.93088 0.98933 0.90509 1.63227 1.02447 1.10396 1.53322 1.23041 0.96898 0.90078 0.99182 1.22675 0.92692 0.99057 1.00293 0.78728 0.92151 0.85504 0.92009 0.88777 0.91840 0.91976 0.92056 0.90778 0.92707 0.85720 0.94291 0.90663 0.90679 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.70 19.25 29.55 0.57 -6.13 16 2 C -0.08 -2.07 11.39 -37.12 -0.42 -2.49 16 3 C 0.23 5.69 5.27 -6.83 -0.04 5.66 16 4 N -0.44 -10.65 2.56 -117.93 -0.30 -10.96 16 5 C -0.33 -7.82 6.60 -14.93 -0.10 -7.92 16 6 H 0.11 2.46 4.39 -52.48 -0.23 2.23 16 7 C 0.03 0.81 5.37 -17.47 -0.09 0.72 16 8 N -0.87 -21.54 8.18 55.50 0.45 -21.09 16 9 Si 0.92 18.86 29.55 -169.99 -5.02 13.83 16 10 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.47 11.24 6.49 -10.99 -0.07 11.17 16 14 O -0.61 -15.89 14.97 5.54 0.08 -15.81 16 15 C -0.06 -1.23 0.46 -153.45 -0.07 -1.30 16 16 C -0.11 -2.00 4.83 -25.61 -0.12 -2.13 16 17 C -0.13 -2.11 6.86 -25.22 -0.17 -2.28 16 18 C -0.11 -1.70 6.53 -25.11 -0.16 -1.86 16 19 C 0.08 1.35 3.73 -65.61 -0.24 1.11 16 20 H 0.08 1.56 6.73 -51.93 -0.35 1.21 16 21 N -0.67 -10.44 6.97 -102.11 -0.71 -11.15 16 22 C 0.04 0.59 7.55 -1.93 -0.01 0.57 16 23 C -0.11 -1.93 4.80 -24.96 -0.12 -2.05 16 24 H 0.20 3.66 7.80 -54.09 -0.42 3.24 16 25 H 0.06 1.46 7.28 -51.93 -0.38 1.08 16 26 H 0.13 3.16 6.09 -51.94 -0.32 2.85 16 27 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 28 H 0.09 2.02 6.06 -51.93 -0.31 1.71 16 29 H 0.06 1.09 7.28 -51.93 -0.38 0.72 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.33 4.56 8.92 -39.29 -0.35 4.21 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.25 7.29 -51.93 -0.38 0.87 16 38 H 0.08 1.62 6.53 -51.93 -0.34 1.28 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -27.56 298.05 -7.19 -34.76 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.12 Total: 12.87 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.06 Total: -6.95 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.56 Total: -43.20 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.08 Total: -15.81 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.56 -7.19 -34.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711310678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.819 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds