Wall clock time and date at job start Mon Mar 30 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46627 * 235.63443 * 3 2 1 5 5 C 1.37099 * 119.99230 * 86.92607 * 4 3 2 6 6 H 1.08008 * 119.99504 * 165.16815 * 5 4 3 7 7 C 1.38946 * 120.00705 * 345.16891 * 5 4 3 8 8 N 1.31413 * 119.99711 * 1.40327 * 7 5 4 9 9 Si 1.86801 * 120.00436 * 181.40763 * 7 5 4 10 10 H 1.48495 * 109.46895 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47036 * 119.99829 * 9 7 5 12 12 H 1.48503 * 109.46551 * 239.99773 * 9 7 5 13 13 C 1.34767 * 120.00309 * 266.92207 * 4 3 2 14 14 O 1.21296 * 120.00400 * 355.36697 * 13 4 3 15 15 C 1.50704 * 120.00041 * 175.64521 * 13 4 3 16 16 C 1.54109 * 111.68899 * 303.60685 * 15 13 4 17 17 C 1.54044 * 104.56331 * 261.14149 * 16 15 13 18 18 C 1.54827 * 103.11505 * 322.61671 * 17 16 15 19 19 C 1.54265 * 104.42607 * 37.16675 * 18 17 16 20 20 H 1.08995 * 111.36098 * 98.75725 * 19 18 17 21 21 N 1.47920 * 108.71331 * 222.44909 * 19 18 17 22 22 C 1.48480 * 105.99798 * 139.43518 * 21 19 18 23 23 C 1.54442 * 111.71559 * 66.98313 * 15 13 4 24 24 H 4.40642 * 5.51322 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.46771 * 115.64267 * 3 2 1 26 26 H 1.08988 * 109.47372 * 355.63924 * 3 2 1 27 27 H 0.97000 * 119.99954 * 180.02562 * 8 7 5 28 28 H 1.09003 * 110.49772 * 20.97557 * 16 15 13 29 29 H 1.09003 * 110.49524 * 143.63170 * 16 15 13 30 30 H 1.09006 * 111.11812 * 203.92871 * 17 16 15 31 31 H 1.08996 * 110.19320 * 80.87854 * 17 16 15 32 32 H 1.08995 * 110.44215 * 278.42656 * 18 17 16 33 33 H 1.09004 * 110.43721 * 155.89806 * 18 17 16 34 34 H 1.00908 * 111.00131 * 260.05348 * 21 19 18 35 35 H 1.09001 * 110.66756 * 79.21465 * 22 21 19 36 36 H 1.08991 * 110.67123 * 202.18998 * 22 21 19 37 37 H 1.09004 * 110.72273 * 217.34202 * 23 15 13 38 38 H 1.08995 * 110.72739 * 340.61796 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7806 1.1402 5 6 3.3026 0.1786 2.3604 6 1 3.8779 0.6711 3.1305 7 6 2.7334 -1.0648 2.6064 8 7 2.0566 -1.6763 1.6604 9 14 2.9300 -1.8671 4.2818 10 1 3.7300 -0.9805 5.1644 11 1 1.5911 -2.0890 4.8846 12 1 3.6257 -3.1701 4.1279 13 6 3.4170 2.0896 0.9896 14 8 3.3487 2.6026 -0.1074 15 6 3.8246 2.9145 2.1831 16 6 2.7665 2.8586 3.3022 17 6 1.9543 4.1565 3.1326 18 6 3.0298 5.1933 2.7259 19 6 3.9972 4.4073 1.8171 20 1 3.7848 4.5854 0.7630 21 7 5.3854 4.7771 2.1694 22 6 6.1681 3.5161 2.1273 23 6 5.1969 2.4757 2.7394 24 1 -1.0501 -0.0003 -0.0002 25 1 3.0091 0.4455 -0.9264 26 1 3.0098 -1.0237 0.0781 27 1 1.6589 -2.5442 1.8322 28 1 2.1344 1.9782 3.1862 29 1 3.2461 2.8587 4.2811 30 1 1.4743 4.4444 4.0680 31 1 1.2144 4.0366 2.3413 32 1 3.5525 5.5652 3.6071 33 1 2.5753 6.0173 2.1757 34 1 5.7555 5.4542 1.5192 35 1 6.4169 3.2519 1.0994 36 1 7.0719 3.6038 2.7301 37 1 5.2077 2.5319 3.8279 38 1 5.4463 1.4699 2.4016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711310678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:20 Heat of formation + Delta-G solvation = 22.209664 kcal Electronic energy + Delta-G solvation = -21100.729580 eV Core-core repulsion = 18137.330603 eV Total energy + Delta-G solvation = -2963.398977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77874 -39.17650 -37.04096 -35.25057 -33.74459 -33.47714 -31.93557 -28.75642 -28.05266 -27.26740 -26.43641 -22.78676 -21.96162 -21.39282 -20.37382 -19.32027 -18.56737 -17.64255 -17.10575 -16.49492 -16.17774 -15.90423 -15.57921 -15.31901 -14.89460 -14.54272 -14.12676 -13.99295 -13.80835 -13.25630 -13.10849 -12.86550 -12.62616 -12.59582 -12.22681 -12.10894 -11.97973 -11.82437 -11.63388 -11.54200 -11.35777 -11.18185 -11.13426 -10.53422 -10.18629 -9.87393 -9.51607 -8.16168 -5.87692 1.40610 1.48939 1.60064 1.86312 2.08876 2.34089 2.42562 3.07195 3.18456 3.26554 3.67506 3.74859 3.93120 4.00560 4.22813 4.32529 4.36522 4.51502 4.59458 4.64913 4.76901 4.81651 4.92657 4.94045 5.08909 5.13047 5.16276 5.19061 5.23795 5.28919 5.40750 5.43165 5.49189 5.55652 5.77948 5.87382 6.44338 6.47115 7.10904 7.14279 7.55556 7.94509 8.75859 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.008980 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.570546 B = 3117.239461 C = 3614.326507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.130 4.130 3 C 0.235 3.765 4 N -0.445 5.445 5 C -0.337 4.337 6 H 0.124 0.876 7 C -0.008 4.008 8 N -0.889 5.889 9 Si 0.984 3.016 10 H -0.250 1.250 11 H -0.287 1.287 12 H -0.282 1.282 13 C 0.461 3.539 14 O -0.642 6.642 15 C -0.066 4.066 16 C -0.105 4.105 17 C -0.123 4.123 18 C -0.096 4.096 19 C 0.075 3.925 20 H 0.046 0.954 21 N -0.653 5.653 22 C 0.041 3.959 23 C -0.108 4.108 24 H 0.233 0.767 25 H 0.049 0.951 26 H 0.118 0.882 27 H 0.266 0.734 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.341 0.659 35 H 0.024 0.976 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 6.745 5.688 9.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.132 4.132 3 C 0.113 3.887 4 N -0.161 5.161 5 C -0.464 4.464 6 H 0.142 0.858 7 C -0.209 4.209 8 N -0.528 5.528 9 Si 0.808 3.192 10 H -0.173 1.173 11 H -0.213 1.213 12 H -0.208 1.208 13 C 0.251 3.749 14 O -0.532 6.532 15 C -0.070 4.070 16 C -0.143 4.143 17 C -0.160 4.160 18 C -0.134 4.134 19 C -0.036 4.036 20 H 0.064 0.936 21 N -0.281 5.281 22 C -0.088 4.088 23 C -0.146 4.146 24 H 0.250 0.750 25 H 0.067 0.933 26 H 0.135 0.865 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.042 0.958 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.393 6.802 5.874 9.607 hybrid contribution -0.415 -1.198 -0.891 1.549 sum 2.979 5.605 4.983 8.070 Atomic orbital electron populations 1.25079 0.96317 1.04618 1.03317 1.23533 0.95073 0.96894 0.97681 1.18288 0.84603 0.98011 0.87837 1.43859 1.55479 1.06779 1.10001 1.20301 1.32649 1.02403 0.91004 0.85816 1.26120 0.95132 0.97624 1.02060 1.70143 1.33889 1.15723 1.33088 0.84973 0.77813 0.78324 0.78073 1.17349 1.21329 1.20753 1.20565 0.82033 0.82201 0.90082 1.90463 1.61443 1.72276 1.28977 1.21659 0.97832 0.94002 0.93490 1.22293 0.96783 0.98364 0.96829 1.22367 0.97402 0.94985 1.01289 1.22285 0.94870 0.96715 0.99557 1.22752 0.90688 0.92381 0.97759 0.93621 1.63281 1.01196 1.10360 1.53277 1.23064 0.97497 0.89452 0.98782 1.22675 0.91890 0.98669 1.01359 0.75007 0.93291 0.86506 0.92330 0.91917 0.89634 0.89094 0.94331 0.88980 0.91522 0.84384 0.95794 0.87568 0.88735 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.48 19.25 74.32 1.43 -11.05 16 2 C -0.13 -6.61 11.39 31.12 0.35 -6.25 16 3 C 0.24 12.06 5.27 84.57 0.45 12.50 16 4 N -0.45 -22.33 2.56 -645.42 -1.65 -23.98 16 5 C -0.34 -16.02 6.60 84.04 0.55 -15.47 16 6 H 0.12 5.42 4.39 -2.91 -0.01 5.41 16 7 C -0.01 -0.40 5.37 84.93 0.46 0.06 16 8 N -0.89 -44.97 8.18 21.66 0.18 -44.80 16 9 Si 0.98 38.07 29.55 68.60 2.03 40.10 16 10 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 11 H -0.29 -11.37 7.11 99.48 0.71 -10.67 16 12 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 13 C 0.46 22.47 6.49 87.66 0.57 23.04 16 14 O -0.64 -35.12 14.97 -3.08 -0.05 -35.16 16 15 C -0.07 -2.56 0.46 -51.49 -0.02 -2.59 16 16 C -0.10 -3.78 4.83 31.32 0.15 -3.62 16 17 C -0.12 -3.87 6.86 31.57 0.22 -3.66 16 18 C -0.10 -2.81 6.53 31.65 0.21 -2.60 16 19 C 0.07 2.60 3.73 45.72 0.17 2.77 16 20 H 0.05 1.88 6.73 -2.39 -0.02 1.87 16 21 N -0.65 -18.84 6.97 -476.95 -3.33 -22.16 16 22 C 0.04 1.21 7.55 86.66 0.65 1.86 16 23 C -0.11 -3.64 4.80 31.74 0.15 -3.49 16 24 H 0.23 8.27 7.80 -4.41 -0.03 8.23 16 25 H 0.05 2.54 7.28 -2.39 -0.02 2.52 16 26 H 0.12 6.14 6.09 -2.39 -0.01 6.12 16 27 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 28 H 0.06 2.67 6.06 -2.39 -0.01 2.66 16 29 H 0.09 2.68 7.28 -2.39 -0.02 2.66 16 30 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 2.40 7.97 -2.39 -0.02 2.38 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.34 8.67 8.92 -89.69 -0.80 7.87 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.09 2.82 7.29 -2.39 -0.02 2.81 16 38 H 0.07 2.50 6.53 -2.39 -0.02 2.48 16 Total: -1.00 -60.44 298.05 2.80 -57.64 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.27 Total: 36.86 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.34 Total: -8.50 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -4.80 Total: -90.94 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.05 Total: -35.16 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -60.44 2.80 -57.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711310678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.854 kcal (2) G-P(sol) polarization free energy of solvation -60.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds