Wall clock time and date at job start Mon Mar 30 2020 04:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47072 * 71.19808 * 3 2 1 5 5 C 1.37100 * 119.99691 * 269.99723 * 4 3 2 6 6 H 1.08001 * 119.99600 * 202.89904 * 5 4 3 7 7 C 1.38950 * 120.00225 * 22.89837 * 5 4 3 8 8 N 1.31417 * 119.99837 * 352.48247 * 7 5 4 9 9 Si 1.86793 * 120.00097 * 172.48723 * 7 5 4 10 10 H 1.48496 * 109.47510 * 89.99724 * 9 7 5 11 11 H 1.48505 * 109.47064 * 209.99852 * 9 7 5 12 12 H 1.48504 * 109.47364 * 329.99578 * 9 7 5 13 13 C 1.34770 * 120.00143 * 89.99859 * 4 3 2 14 14 O 1.21292 * 120.00317 * 354.98647 * 13 4 3 15 15 C 1.50702 * 120.00068 * 174.98459 * 13 4 3 16 16 C 1.52994 * 109.47232 * 186.39095 * 15 13 4 17 17 C 1.55844 * 115.58430 * 61.77251 * 16 15 13 18 18 C 1.58511 * 102.82692 * 200.60445 * 17 16 15 19 19 C 1.55838 * 102.82584 * 359.97438 * 18 17 16 20 20 C 1.55852 * 105.03460 * 288.02059 * 19 18 17 21 21 C 1.54833 * 103.51717 * 72.48335 * 20 19 18 22 22 N 1.50648 * 101.73621 * 32.97505 * 19 18 17 23 23 H 4.40643 * 5.51403 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.46798 * 311.19505 * 3 2 1 25 25 H 1.08998 * 109.46769 * 191.20054 * 3 2 1 26 26 H 0.96995 * 119.99936 * 185.01651 * 8 7 5 27 27 H 1.09006 * 109.47249 * 306.39203 * 15 13 4 28 28 H 1.09001 * 109.47381 * 66.39164 * 15 13 4 29 29 H 1.09000 * 110.61259 * 319.62027 * 17 16 15 30 30 H 1.09000 * 110.61301 * 82.60274 * 17 16 15 31 31 H 1.09005 * 111.15525 * 241.61769 * 18 17 16 32 32 H 1.09004 * 110.86203 * 118.24017 * 18 17 16 33 33 H 1.09002 * 115.58489 * 159.39381 * 19 18 17 34 34 H 1.09000 * 110.60955 * 313.97974 * 20 19 18 35 35 H 1.08998 * 110.75056 * 191.05432 * 20 19 18 36 36 H 1.09000 * 110.61492 * 241.49612 * 21 20 19 37 37 H 1.08997 * 110.61393 * 118.50926 * 21 20 19 38 38 H 1.00900 * 111.00449 * 189.56792 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4443 -1.3075 5 6 3.3637 -1.7765 -1.5365 6 1 4.0457 -2.0807 -2.3168 7 6 2.7185 -2.7351 -0.7649 8 7 2.0058 -2.3693 0.2768 9 14 2.8644 -4.5438 -1.2082 10 1 4.0370 -5.1312 -0.5119 11 1 1.6312 -5.2572 -0.7890 12 1 3.0406 -4.6810 -2.6764 13 6 3.3587 0.4559 -2.2851 14 8 3.0707 1.6216 -2.1139 15 6 3.9674 0.0142 -3.5910 16 6 4.2612 1.2404 -4.4574 17 6 5.2812 2.2568 -3.8614 18 6 4.9587 3.5880 -4.6592 19 6 3.7983 3.1526 -5.6039 20 6 4.4693 2.2399 -6.6743 21 6 4.7844 0.9396 -5.8951 22 7 3.0837 2.1295 -4.7601 23 1 -1.0500 0.0001 -0.0002 24 1 3.0096 -0.6760 0.7733 25 1 3.0089 1.0089 0.1996 26 1 1.6156 -3.0411 0.8576 27 1 4.8953 -0.5237 -3.3960 28 1 3.2705 -0.6412 -4.1135 29 1 5.1152 2.3845 -2.7917 30 1 6.3037 1.9332 -4.0561 31 1 5.8211 3.9184 -5.2382 32 1 4.6278 4.3757 -3.9823 33 1 3.1812 3.9614 -5.9952 34 1 5.3866 2.6959 -7.0467 35 1 3.7816 2.0380 -7.4955 36 1 5.8579 0.7511 -5.8812 37 1 4.2508 0.0937 -6.3283 38 1 2.3881 1.6371 -5.3004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713558551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:27 Heat of formation + Delta-G solvation = 55.785727 kcal Electronic energy + Delta-G solvation = -20378.567308 eV Core-core repulsion = 17416.624298 eV Total energy + Delta-G solvation = -2961.943010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12910 -38.19311 -34.94278 -31.87023 -31.45151 -30.85807 -30.03570 -29.17110 -27.14213 -25.59774 -24.05348 -22.01644 -20.08768 -19.20768 -18.61876 -17.60910 -16.56010 -15.99214 -15.45126 -15.04719 -14.69078 -14.22185 -14.03033 -13.94111 -13.09593 -12.64641 -12.37017 -12.30016 -11.86141 -11.57815 -11.41672 -11.33897 -11.24229 -11.13179 -10.96461 -10.83472 -10.59811 -10.51516 -10.42175 -10.28019 -9.65718 -9.41956 -9.08976 -8.48356 -8.31568 -8.02430 -7.75534 -6.23732 -3.92764 3.12008 3.20803 3.23087 3.89843 4.06034 4.19567 4.34135 4.45789 4.77562 4.86137 5.04152 5.09294 5.18476 5.37036 5.41984 5.56726 5.58388 5.72988 5.83081 5.86543 5.88923 6.00748 6.06886 6.15692 6.29822 6.33353 6.39369 6.46773 6.60337 6.78337 6.88031 7.07875 7.20593 7.36324 7.41777 7.76045 7.84412 8.43052 9.11034 9.15535 9.59159 10.00254 10.70521 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.006399 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.968585 B = 4374.903102 C = 5060.906392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.080 4.080 3 C 0.242 3.758 4 N -0.455 5.455 5 C -0.336 4.336 6 H 0.097 0.903 7 C 0.037 3.963 8 N -0.867 5.867 9 Si 0.921 3.079 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.470 3.530 14 O -0.565 6.565 15 C -0.091 4.091 16 C 0.100 3.900 17 C -0.104 4.104 18 C -0.108 4.108 19 C 0.043 3.957 20 C -0.154 4.154 21 C -0.152 4.152 22 N -0.613 5.613 23 H 0.194 0.806 24 H 0.118 0.882 25 H 0.057 0.943 26 H 0.268 0.732 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 4.255 -8.900 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.081 4.081 3 C 0.119 3.881 4 N -0.175 5.175 5 C -0.464 4.464 6 H 0.114 0.886 7 C -0.168 4.168 8 N -0.505 5.505 9 Si 0.748 3.252 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.257 3.743 14 O -0.448 6.448 15 C -0.132 4.132 16 C 0.008 3.992 17 C -0.142 4.142 18 C -0.146 4.146 19 C -0.068 4.068 20 C -0.193 4.193 21 C -0.192 4.192 22 N -0.239 5.239 23 H 0.211 0.789 24 H 0.135 0.865 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.919 5.115 -7.975 10.675 hybrid contribution -0.084 -1.854 -1.173 2.196 sum 4.835 3.261 -9.148 10.849 Atomic orbital electron populations 1.24121 0.95313 1.08686 1.03547 1.23272 0.94429 0.93360 0.97085 1.18242 0.83977 0.97962 0.87896 1.43684 1.57946 1.06547 1.09339 1.19581 1.25390 0.80640 1.20740 0.88569 1.25335 0.94906 1.00261 0.96254 1.69948 1.32946 1.33587 1.14016 0.86015 0.77689 0.82535 0.78925 1.20447 1.20892 1.19591 1.19985 0.83134 0.86139 0.84993 1.90614 1.55543 1.17979 1.80658 1.21005 1.01853 0.95487 0.94839 1.23179 0.90984 0.92521 0.92502 1.23157 0.95898 0.93674 1.01433 1.23101 0.96195 0.97856 0.97472 1.24223 0.94816 0.95747 0.91975 1.23369 1.00821 0.96682 0.98406 1.23417 1.01556 0.97337 0.96854 1.66024 1.08724 1.11369 1.37754 0.78924 0.86485 0.92467 0.92064 0.89591 0.89871 0.89715 0.92752 0.92370 0.91458 0.87785 0.91633 0.92177 0.91358 0.91859 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.14 19.25 29.55 0.57 -6.57 16 2 C -0.08 -2.05 11.35 -37.12 -0.42 -2.47 16 3 C 0.24 6.05 5.14 -6.83 -0.04 6.01 16 4 N -0.45 -11.38 2.58 -117.93 -0.30 -11.68 16 5 C -0.34 -8.34 9.15 -14.93 -0.14 -8.47 16 6 H 0.10 2.21 6.46 -52.49 -0.34 1.88 16 7 C 0.04 0.91 5.40 -17.47 -0.09 0.82 16 8 N -0.87 -22.56 8.37 55.50 0.46 -22.10 16 9 Si 0.92 19.47 29.56 -169.99 -5.03 14.44 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 13 C 0.47 11.06 7.22 -10.99 -0.08 10.98 16 14 O -0.57 -14.47 13.38 5.55 0.07 -14.40 16 15 C -0.09 -1.75 4.29 -27.89 -0.12 -1.87 16 16 C 0.10 1.66 1.05 -126.43 -0.13 1.53 16 17 C -0.10 -1.69 5.94 -22.17 -0.13 -1.82 16 18 C -0.11 -1.54 6.62 -22.17 -0.15 -1.69 16 19 C 0.04 0.59 5.54 -62.56 -0.35 0.25 16 20 C -0.15 -1.84 6.33 -24.24 -0.15 -1.99 16 21 C -0.15 -2.04 5.99 -24.21 -0.14 -2.18 16 22 N -0.61 -10.60 6.47 -81.92 -0.53 -11.13 16 23 H 0.19 3.85 7.80 -54.09 -0.42 3.43 16 24 H 0.12 2.99 6.31 -51.93 -0.33 2.66 16 25 H 0.06 1.39 7.50 -51.93 -0.39 1.00 16 26 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 27 H 0.09 1.53 7.51 -51.93 -0.39 1.14 16 28 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 29 H 0.08 1.65 6.55 -51.93 -0.34 1.31 16 30 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 31 H 0.06 0.69 7.81 -51.93 -0.41 0.29 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.71 7.80 -51.93 -0.40 0.31 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.32 5.27 8.66 -39.29 -0.34 4.93 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -29.15 305.95 -7.50 -36.65 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.42 Total: 11.09 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.37 Total: -7.48 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.37 Total: -44.91 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.07 Total: -14.40 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.15 -7.50 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713558551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.434 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds