Wall clock time and date at job start Mon Mar 30 2020 04:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47072 * 71.19808 * 3 2 1 5 5 C 1.37100 * 119.99691 * 269.99723 * 4 3 2 6 6 H 1.08001 * 119.99600 * 202.89904 * 5 4 3 7 7 C 1.38950 * 120.00225 * 22.89837 * 5 4 3 8 8 N 1.31417 * 119.99837 * 352.48247 * 7 5 4 9 9 Si 1.86793 * 120.00097 * 172.48723 * 7 5 4 10 10 H 1.48496 * 109.47510 * 89.99724 * 9 7 5 11 11 H 1.48505 * 109.47064 * 209.99852 * 9 7 5 12 12 H 1.48504 * 109.47364 * 329.99578 * 9 7 5 13 13 C 1.34770 * 120.00143 * 89.99859 * 4 3 2 14 14 O 1.21292 * 120.00317 * 354.98647 * 13 4 3 15 15 C 1.50702 * 120.00068 * 174.98459 * 13 4 3 16 16 C 1.52994 * 109.47232 * 186.39095 * 15 13 4 17 17 C 1.55844 * 115.58430 * 61.77251 * 16 15 13 18 18 C 1.58511 * 102.82692 * 200.60445 * 17 16 15 19 19 C 1.55838 * 102.82584 * 359.97438 * 18 17 16 20 20 C 1.55852 * 105.03460 * 288.02059 * 19 18 17 21 21 C 1.54833 * 103.51717 * 72.48335 * 20 19 18 22 22 N 1.50648 * 101.73621 * 32.97505 * 19 18 17 23 23 H 4.40643 * 5.51403 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.46798 * 311.19505 * 3 2 1 25 25 H 1.08998 * 109.46769 * 191.20054 * 3 2 1 26 26 H 0.96995 * 119.99936 * 185.01651 * 8 7 5 27 27 H 1.09006 * 109.47249 * 306.39203 * 15 13 4 28 28 H 1.09001 * 109.47381 * 66.39164 * 15 13 4 29 29 H 1.09000 * 110.61259 * 319.62027 * 17 16 15 30 30 H 1.09000 * 110.61301 * 82.60274 * 17 16 15 31 31 H 1.09005 * 111.15525 * 241.61769 * 18 17 16 32 32 H 1.09004 * 110.86203 * 118.24017 * 18 17 16 33 33 H 1.09002 * 115.58489 * 159.39381 * 19 18 17 34 34 H 1.09000 * 110.60955 * 313.97974 * 20 19 18 35 35 H 1.08998 * 110.75056 * 191.05432 * 20 19 18 36 36 H 1.09000 * 110.61492 * 241.49612 * 21 20 19 37 37 H 1.08997 * 110.61393 * 118.50926 * 21 20 19 38 38 H 1.00900 * 111.00449 * 189.56792 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4443 -1.3075 5 6 3.3637 -1.7765 -1.5365 6 1 4.0457 -2.0807 -2.3168 7 6 2.7185 -2.7351 -0.7649 8 7 2.0058 -2.3693 0.2768 9 14 2.8644 -4.5438 -1.2082 10 1 4.0370 -5.1312 -0.5119 11 1 1.6312 -5.2572 -0.7890 12 1 3.0406 -4.6810 -2.6764 13 6 3.3587 0.4559 -2.2851 14 8 3.0707 1.6216 -2.1139 15 6 3.9674 0.0142 -3.5910 16 6 4.2612 1.2404 -4.4574 17 6 5.2812 2.2568 -3.8614 18 6 4.9587 3.5880 -4.6592 19 6 3.7983 3.1526 -5.6039 20 6 4.4693 2.2399 -6.6743 21 6 4.7844 0.9396 -5.8951 22 7 3.0837 2.1295 -4.7601 23 1 -1.0500 0.0001 -0.0002 24 1 3.0096 -0.6760 0.7733 25 1 3.0089 1.0089 0.1996 26 1 1.6156 -3.0411 0.8576 27 1 4.8953 -0.5237 -3.3960 28 1 3.2705 -0.6412 -4.1135 29 1 5.1152 2.3845 -2.7917 30 1 6.3037 1.9332 -4.0561 31 1 5.8211 3.9184 -5.2382 32 1 4.6278 4.3757 -3.9823 33 1 3.1812 3.9614 -5.9952 34 1 5.3866 2.6959 -7.0467 35 1 3.7816 2.0380 -7.4955 36 1 5.8579 0.7511 -5.8812 37 1 4.2508 0.0937 -6.3283 38 1 2.3881 1.6371 -5.3004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713558551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:27 Heat of formation + Delta-G solvation = 38.297785 kcal Electronic energy + Delta-G solvation = -20379.325642 eV Core-core repulsion = 17416.624298 eV Total energy + Delta-G solvation = -2962.701344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.39676 -39.95631 -36.84238 -33.72400 -33.29861 -32.40989 -31.15302 -30.33647 -28.81225 -27.30008 -25.85815 -23.10984 -21.42717 -20.81415 -19.98922 -19.33390 -18.35278 -17.79322 -16.85819 -16.35721 -16.03500 -15.93456 -15.74605 -15.45557 -14.64479 -14.35875 -13.84412 -13.74263 -13.47257 -13.06258 -12.90697 -12.83201 -12.71936 -12.58712 -12.35472 -12.18319 -12.10013 -12.00045 -11.64009 -11.58446 -11.30784 -11.03822 -10.83156 -10.43188 -10.07032 -9.70271 -9.32855 -8.12574 -5.87697 1.45813 1.49036 1.59253 2.03797 2.22829 2.36829 2.49910 3.12960 3.19099 3.31957 3.71163 3.78758 3.98819 4.00481 4.19006 4.32160 4.37220 4.46249 4.54550 4.61640 4.72997 4.75313 4.87356 4.92683 4.98993 5.03630 5.11285 5.12358 5.21642 5.33658 5.39231 5.47100 5.50700 5.53798 5.89770 5.95485 6.50436 6.55902 7.17896 7.22246 7.71278 8.12640 8.81570 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.006399 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.968585 B = 4374.903102 C = 5060.906392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.123 4.123 3 C 0.245 3.755 4 N -0.468 5.468 5 C -0.350 4.350 6 H 0.112 0.888 7 C -0.009 4.009 8 N -0.893 5.893 9 Si 0.989 3.011 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.260 1.260 13 C 0.461 3.539 14 O -0.592 6.592 15 C -0.084 4.084 16 C 0.092 3.908 17 C -0.107 4.107 18 C -0.105 4.105 19 C 0.043 3.957 20 C -0.141 4.141 21 C -0.143 4.143 22 N -0.649 5.649 23 H 0.230 0.770 24 H 0.106 0.894 25 H 0.051 0.949 26 H 0.265 0.735 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 3.620 -11.358 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.125 4.125 3 C 0.122 3.878 4 N -0.189 5.189 5 C -0.477 4.477 6 H 0.130 0.870 7 C -0.210 4.210 8 N -0.532 5.532 9 Si 0.814 3.186 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.184 1.184 13 C 0.251 3.749 14 O -0.476 6.476 15 C -0.124 4.124 16 C 0.000 4.000 17 C -0.145 4.145 18 C -0.143 4.143 19 C -0.067 4.067 20 C -0.180 4.180 21 C -0.182 4.182 22 N -0.275 5.275 23 H 0.246 0.754 24 H 0.124 0.876 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.650 4.489 -10.448 12.698 hybrid contribution -0.347 -1.579 -0.334 1.651 sum 5.303 2.910 -10.782 12.362 Atomic orbital electron populations 1.25023 0.96360 1.07060 1.01973 1.23687 0.95294 0.94902 0.98650 1.18083 0.84255 0.97188 0.88272 1.43941 1.58279 1.07161 1.09538 1.19996 1.25894 0.80639 1.21218 0.87008 1.26181 0.94572 1.04263 0.96014 1.70104 1.33757 1.34514 1.14800 0.84972 0.77245 0.77269 0.79153 1.19640 1.21832 1.18353 1.20792 0.82448 0.85606 0.86077 1.90586 1.56462 1.19100 1.81430 1.20967 1.01809 0.96970 0.92650 1.23145 0.91146 0.91570 0.94131 1.23133 0.97043 0.95185 0.99167 1.23121 0.97616 0.96175 0.97353 1.24335 0.94526 0.95672 0.92189 1.23289 1.01793 0.95186 0.97734 1.23343 1.02263 0.98388 0.94218 1.66003 1.09646 1.12432 1.39422 0.75353 0.87634 0.93120 0.92438 0.88447 0.89770 0.93948 0.90680 0.89305 0.93275 0.86496 0.89607 0.90846 0.89974 0.91353 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.66 19.25 74.32 1.43 -12.23 16 2 C -0.12 -6.51 11.35 31.13 0.35 -6.15 16 3 C 0.24 12.77 5.14 84.58 0.43 13.21 16 4 N -0.47 -24.01 2.58 -645.42 -1.67 -25.68 16 5 C -0.35 -17.42 9.15 84.04 0.77 -16.66 16 6 H 0.11 5.05 6.46 -2.91 -0.02 5.03 16 7 C -0.01 -0.46 5.40 84.93 0.46 0.00 16 8 N -0.89 -47.16 8.37 21.66 0.18 -46.98 16 9 Si 0.99 39.46 29.56 68.60 2.03 41.48 16 10 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 11 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 13 C 0.46 22.21 7.22 87.66 0.63 22.84 16 14 O -0.59 -31.36 13.38 -3.07 -0.04 -31.40 16 15 C -0.08 -3.16 4.29 29.85 0.13 -3.04 16 16 C 0.09 2.94 1.05 4.79 0.01 2.94 16 17 C -0.11 -3.42 5.94 33.55 0.20 -3.22 16 18 C -0.10 -2.81 6.62 33.55 0.22 -2.58 16 19 C 0.04 1.08 5.54 46.15 0.26 1.34 16 20 C -0.14 -2.83 6.33 32.21 0.20 -2.63 16 21 C -0.14 -3.36 5.99 32.23 0.19 -3.17 16 22 N -0.65 -21.94 6.47 -413.09 -2.67 -24.61 16 23 H 0.23 8.73 7.80 -4.42 -0.03 8.69 16 24 H 0.11 5.66 6.31 -2.39 -0.02 5.64 16 25 H 0.05 2.62 7.50 -2.39 -0.02 2.60 16 26 H 0.27 13.52 8.32 -92.71 -0.77 12.75 16 27 H 0.10 3.39 7.51 -2.38 -0.02 3.37 16 28 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.04 1.69 6.55 -2.39 -0.02 1.68 16 30 H 0.07 2.01 7.79 -2.39 -0.02 1.99 16 31 H 0.09 1.82 7.81 -2.38 -0.02 1.80 16 32 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.09 1.43 7.80 -2.39 -0.02 1.41 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.71 7.79 -2.39 -0.02 1.70 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.32 10.31 8.66 -89.69 -0.78 9.53 16 Total: -1.00 -63.78 305.95 3.39 -60.39 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.28 Total: 36.12 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 5.29 Total: -9.33 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -4.16 Total: -97.26 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.04 Total: -31.40 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Total: -63.78 3.39 -60.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713558551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.686 kcal (2) G-P(sol) polarization free energy of solvation -63.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds