Wall clock time and date at job start Mon Mar 30 2020 04:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 H 1.08999 * 109.47309 * 305.83078 * 3 2 1 5 5 C 1.50701 * 109.47104 * 185.82983 * 3 2 1 6 6 H 1.08003 * 119.99955 * 245.69567 * 5 3 2 7 7 C 1.37870 * 120.00098 * 65.69512 * 5 3 2 8 8 N 1.31520 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46974 * 90.00563 * 9 7 5 11 11 H 1.48502 * 109.47114 * 210.00520 * 9 7 5 12 12 H 1.48501 * 109.47090 * 330.00119 * 9 7 5 13 13 N 1.46898 * 109.46848 * 65.82930 * 3 2 1 14 14 C 1.46037 * 110.99845 * 151.35627 * 13 3 2 15 15 C 1.51345 * 113.61812 * 56.32472 * 14 13 3 16 16 O 1.43340 * 110.65044 * 65.10790 * 15 14 13 17 17 C 1.36050 * 115.28131 * 274.50779 * 16 15 14 18 18 C 1.39006 * 120.44214 * 250.26289 * 17 16 15 19 19 C 1.38657 * 118.02646 * 177.91319 * 18 17 16 20 20 C 1.38250 * 119.26137 * 359.97438 * 19 18 17 21 21 N 1.31947 * 121.01460 * 0.40326 * 20 19 18 22 22 C 1.31803 * 121.43225 * 359.94121 * 21 20 19 23 23 C 1.46673 * 111.00347 * 277.44370 * 13 3 2 24 24 H 1.08995 * 109.47269 * 46.80663 * 1 2 3 25 25 H 1.08998 * 109.47073 * 166.81255 * 1 2 3 26 26 H 1.09000 * 109.47115 * 286.81052 * 1 2 3 27 27 H 1.09002 * 109.47211 * 240.00357 * 2 1 3 28 28 H 1.09002 * 109.47347 * 120.00228 * 2 1 3 29 29 H 0.97003 * 120.00119 * 179.97438 * 8 7 5 30 30 H 1.09003 * 108.65325 * 295.25180 * 14 13 3 31 31 H 1.09001 * 108.65530 * 177.39429 * 14 13 3 32 32 H 1.09004 * 109.23334 * 185.39650 * 15 14 13 33 33 H 1.09004 * 109.23796 * 304.81458 * 15 14 13 34 34 H 1.07998 * 120.98775 * 357.93797 * 18 17 16 35 35 H 1.08001 * 120.36751 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.49529 * 180.42238 * 20 19 18 37 37 H 1.08993 * 109.58452 * 79.02302 * 23 13 3 38 38 H 1.08998 * 109.58249 * 199.30118 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5939 1.9857 -0.8332 5 6 3.5401 1.4450 -0.1443 6 1 4.1599 1.8018 0.6650 7 6 4.1213 0.9918 -1.3095 8 7 3.3665 0.5578 -2.2953 9 14 5.9806 0.9955 -1.4887 10 1 6.5270 -0.2982 -1.0060 11 1 6.3399 1.1823 -2.9174 12 1 6.5532 2.1054 -0.6852 13 7 1.6685 2.0932 1.2636 14 6 2.6283 3.1354 1.6175 15 6 2.8030 4.1885 0.5446 16 8 1.5891 4.9281 0.3599 17 6 0.6924 4.3685 -0.4967 18 6 0.4466 4.9477 -1.7362 19 6 -0.4440 4.3115 -2.5875 20 6 -1.0484 3.1374 -2.1784 21 7 -0.7960 2.6208 -0.9908 22 6 0.0393 3.2008 -0.1523 23 6 0.2891 2.5893 1.2138 24 1 -0.3633 0.7034 -0.7492 25 1 -0.3633 -1.0005 -0.2344 26 1 -0.3633 0.2972 0.9837 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7754 0.2393 -3.1152 30 1 3.5947 2.6689 1.8088 31 1 2.2923 3.6226 2.5328 32 1 3.5990 4.8725 0.8391 33 1 3.0746 3.7041 -0.3933 34 1 0.9351 5.8657 -2.0278 35 1 -0.6625 4.7282 -3.5597 36 1 -1.7375 2.6351 -2.8411 37 1 -0.4025 1.7627 1.3761 38 1 0.1443 3.3441 1.9867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716513905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:24 Heat of formation + Delta-G solvation = 29.256748 kcal Electronic energy + Delta-G solvation = -21514.454223 eV Core-core repulsion = 18551.360830 eV Total energy + Delta-G solvation = -2963.093393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74758 -37.92955 -36.65313 -33.02733 -31.97749 -31.53617 -30.81972 -27.70662 -27.31512 -24.97239 -23.41286 -22.94183 -21.41264 -20.88801 -19.16927 -17.16145 -16.74105 -16.42631 -15.80915 -15.51309 -14.64672 -14.30806 -14.13669 -13.87911 -13.59546 -12.88533 -12.57225 -12.41024 -12.30623 -12.05017 -11.95727 -11.63390 -11.14458 -11.00010 -10.87754 -10.55193 -10.24975 -10.12014 -9.96696 -9.69021 -9.31771 -9.21195 -8.69721 -8.67341 -8.48153 -8.11953 -7.27129 -6.10629 -4.15766 1.44129 1.63534 3.22778 3.30318 3.31101 3.86377 4.31867 4.44282 4.76159 5.03036 5.16006 5.20000 5.21156 5.45833 5.65226 5.81459 5.83630 5.95315 6.00618 6.08907 6.25955 6.40747 6.43731 6.48242 6.54494 6.67417 6.73760 6.78801 6.93737 7.21052 7.28100 7.50363 7.58900 7.70433 7.80797 7.84863 8.10248 8.24121 8.43359 8.53402 8.92154 9.48653 10.96086 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.009430 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.514581 B = 2968.384640 C = 3095.160906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C 0.210 3.790 4 H 0.022 0.978 5 C -0.528 4.528 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.881 5.881 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.525 5.525 14 C 0.041 3.959 15 C 0.022 3.978 16 O -0.335 6.335 17 C 0.056 3.944 18 C -0.094 4.094 19 C -0.166 4.166 20 C 0.085 3.915 21 N -0.450 5.450 22 C 0.096 3.904 23 C 0.094 3.906 24 H 0.079 0.921 25 H 0.021 0.979 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.152 0.848 37 H 0.101 0.899 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 6.670 1.544 8.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.139 4.139 3 C 0.104 3.896 4 H 0.039 0.961 5 C -0.566 4.566 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.519 5.519 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.247 5.247 14 C -0.088 4.088 15 C -0.053 4.053 16 O -0.250 6.250 17 C 0.010 3.990 18 C -0.120 4.120 19 C -0.186 4.186 20 C -0.072 4.072 21 N -0.161 5.161 22 C -0.045 4.045 23 C -0.035 4.035 24 H 0.098 0.902 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.169 0.831 37 H 0.119 0.881 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.679 5.640 2.099 8.275 hybrid contribution 1.587 1.116 -1.371 2.375 sum -4.093 6.756 0.729 7.932 Atomic orbital electron populations 1.22410 0.98658 0.99875 1.01412 1.21430 0.92496 0.98872 1.01078 1.19499 0.94858 0.91392 0.83821 0.96069 1.21494 0.91240 1.43252 1.00594 0.91373 1.24954 0.97911 0.95073 0.95889 1.69956 1.34756 1.41914 1.05268 0.86639 0.85824 0.78608 0.77242 1.20511 1.21309 1.19854 1.61944 0.99162 1.26330 1.37271 1.22105 0.99268 0.91289 0.96142 1.23556 0.83435 0.94947 1.03370 1.86219 1.28279 1.48431 1.62113 1.19438 0.94403 0.94556 0.90640 1.21588 0.98267 1.00701 0.91459 1.21930 0.98729 0.97579 1.00394 1.22686 0.98039 0.93047 0.93442 1.67615 1.14973 1.30174 1.03359 1.22745 0.92399 0.91171 0.98140 1.21836 0.93387 0.98940 0.89368 0.90219 0.95980 0.93940 0.90342 0.94606 0.92907 0.88469 0.92810 0.89399 0.88964 0.84909 0.85093 0.83099 0.88074 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 8.49 37.16 0.32 -3.24 16 2 C -0.10 -2.44 5.49 -26.73 -0.15 -2.59 16 3 C 0.21 5.07 0.87 -68.86 -0.06 5.01 16 4 H 0.02 0.58 5.24 -51.93 -0.27 0.31 16 5 C -0.53 -13.54 6.10 -34.44 -0.21 -13.75 16 6 H 0.07 1.70 5.22 -52.48 -0.27 1.43 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.88 -24.52 11.74 55.43 0.65 -23.87 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.53 -11.11 4.67 -230.80 -1.08 -12.19 16 14 C 0.04 0.78 4.92 -5.13 -0.03 0.76 16 15 C 0.02 0.43 6.07 36.32 0.22 0.65 16 16 O -0.33 -6.44 10.05 -19.90 -0.20 -6.64 16 17 C 0.06 1.09 5.35 -39.33 -0.21 0.88 16 18 C -0.09 -1.60 10.15 -39.14 -0.40 -2.00 16 19 C -0.17 -2.56 10.11 -39.42 -0.40 -2.96 16 20 C 0.08 1.41 11.17 -17.50 -0.20 1.21 16 21 N -0.45 -8.68 7.22 -9.14 -0.07 -8.75 16 22 C 0.10 1.90 3.71 -82.12 -0.30 1.60 16 23 C 0.09 1.81 5.09 -4.59 -0.02 1.79 16 24 H 0.08 1.75 4.67 -51.93 -0.24 1.51 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.85 5.54 -51.93 -0.29 0.56 16 27 H 0.08 2.13 6.43 -51.93 -0.33 1.80 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.10 1.92 5.78 -51.93 -0.30 1.62 16 31 H 0.05 0.93 7.90 -51.93 -0.41 0.52 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.09 2.08 5.67 -51.93 -0.29 1.79 16 34 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 37 H 0.10 1.93 4.96 -51.93 -0.26 1.67 16 38 H 0.07 1.31 7.76 -51.93 -0.40 0.91 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -28.59 283.43 -7.72 -36.31 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.75 Total: 6.40 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.53 Total: -11.01 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.49 Total: -44.81 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.20 Total: -6.64 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.59 -7.72 -36.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716513905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.570 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds