Wall clock time and date at job start Mon Mar 30 2020 04:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 H 1.08999 * 109.47309 * 305.83078 * 3 2 1 5 5 C 1.50701 * 109.47104 * 185.82983 * 3 2 1 6 6 H 1.08003 * 119.99955 * 245.69567 * 5 3 2 7 7 C 1.37870 * 120.00098 * 65.69512 * 5 3 2 8 8 N 1.31520 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46974 * 90.00563 * 9 7 5 11 11 H 1.48502 * 109.47114 * 210.00520 * 9 7 5 12 12 H 1.48501 * 109.47090 * 330.00119 * 9 7 5 13 13 N 1.46898 * 109.46848 * 65.82930 * 3 2 1 14 14 C 1.46037 * 110.99845 * 151.35627 * 13 3 2 15 15 C 1.51345 * 113.61812 * 56.32472 * 14 13 3 16 16 O 1.43340 * 110.65044 * 65.10790 * 15 14 13 17 17 C 1.36050 * 115.28131 * 274.50779 * 16 15 14 18 18 C 1.39006 * 120.44214 * 250.26289 * 17 16 15 19 19 C 1.38657 * 118.02646 * 177.91319 * 18 17 16 20 20 C 1.38250 * 119.26137 * 359.97438 * 19 18 17 21 21 N 1.31947 * 121.01460 * 0.40326 * 20 19 18 22 22 C 1.31803 * 121.43225 * 359.94121 * 21 20 19 23 23 C 1.46673 * 111.00347 * 277.44370 * 13 3 2 24 24 H 1.08995 * 109.47269 * 46.80663 * 1 2 3 25 25 H 1.08998 * 109.47073 * 166.81255 * 1 2 3 26 26 H 1.09000 * 109.47115 * 286.81052 * 1 2 3 27 27 H 1.09002 * 109.47211 * 240.00357 * 2 1 3 28 28 H 1.09002 * 109.47347 * 120.00228 * 2 1 3 29 29 H 0.97003 * 120.00119 * 179.97438 * 8 7 5 30 30 H 1.09003 * 108.65325 * 295.25180 * 14 13 3 31 31 H 1.09001 * 108.65530 * 177.39429 * 14 13 3 32 32 H 1.09004 * 109.23334 * 185.39650 * 15 14 13 33 33 H 1.09004 * 109.23796 * 304.81458 * 15 14 13 34 34 H 1.07998 * 120.98775 * 357.93797 * 18 17 16 35 35 H 1.08001 * 120.36751 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.49529 * 180.42238 * 20 19 18 37 37 H 1.08993 * 109.58452 * 79.02302 * 23 13 3 38 38 H 1.08998 * 109.58249 * 199.30118 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5939 1.9857 -0.8332 5 6 3.5401 1.4450 -0.1443 6 1 4.1599 1.8018 0.6650 7 6 4.1213 0.9918 -1.3095 8 7 3.3665 0.5578 -2.2953 9 14 5.9806 0.9955 -1.4887 10 1 6.5270 -0.2982 -1.0060 11 1 6.3399 1.1823 -2.9174 12 1 6.5532 2.1054 -0.6852 13 7 1.6685 2.0932 1.2636 14 6 2.6283 3.1354 1.6175 15 6 2.8030 4.1885 0.5446 16 8 1.5891 4.9281 0.3599 17 6 0.6924 4.3685 -0.4967 18 6 0.4466 4.9477 -1.7362 19 6 -0.4440 4.3115 -2.5875 20 6 -1.0484 3.1374 -2.1784 21 7 -0.7960 2.6208 -0.9908 22 6 0.0393 3.2008 -0.1523 23 6 0.2891 2.5893 1.2138 24 1 -0.3633 0.7034 -0.7492 25 1 -0.3633 -1.0005 -0.2344 26 1 -0.3633 0.2972 0.9837 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7754 0.2393 -3.1152 30 1 3.5947 2.6689 1.8088 31 1 2.2923 3.6226 2.5328 32 1 3.5990 4.8725 0.8391 33 1 3.0746 3.7041 -0.3933 34 1 0.9351 5.8657 -2.0278 35 1 -0.6625 4.7282 -3.5597 36 1 -1.7375 2.6351 -2.8411 37 1 -0.4025 1.7627 1.3761 38 1 0.1443 3.3441 1.9867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716513905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:23 Heat of formation + Delta-G solvation = 10.553873 kcal Electronic energy + Delta-G solvation = -21515.265240 eV Core-core repulsion = 18551.360830 eV Total energy + Delta-G solvation = -2963.904410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.18804 -39.38116 -38.25224 -34.88125 -33.51200 -33.11035 -32.38518 -29.31685 -28.97859 -26.58789 -25.15341 -24.39226 -22.82985 -22.58276 -20.89839 -18.65200 -18.47650 -18.01158 -17.17486 -17.15019 -16.35005 -15.95812 -15.75399 -15.37492 -15.09016 -14.35123 -14.19860 -13.94159 -13.85204 -13.70791 -13.60528 -13.18281 -12.94138 -12.76021 -12.65810 -12.28728 -11.95142 -11.70964 -11.67780 -11.41798 -11.05346 -10.73965 -10.52899 -10.43783 -10.07388 -9.54855 -8.94637 -8.11274 -6.20535 0.08357 0.30722 1.39149 1.41823 1.49047 2.40193 2.48525 3.05034 3.19387 3.35584 3.50587 3.79092 3.99300 4.16932 4.23711 4.40395 4.45902 4.51756 4.54021 4.62744 4.65573 4.76550 4.85905 4.94117 5.01444 5.13814 5.14498 5.18530 5.35134 5.49455 5.57591 5.65694 5.72806 5.79280 5.94267 6.23958 6.36054 6.39479 6.74683 6.96404 7.07703 7.47106 8.95284 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.009430 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.514581 B = 2968.384640 C = 3095.160906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.530 4.530 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.261 1.261 13 N -0.532 5.532 14 C 0.039 3.961 15 C 0.030 3.970 16 O -0.334 6.334 17 C 0.029 3.971 18 C -0.102 4.102 19 C -0.156 4.156 20 C 0.073 3.927 21 N -0.472 5.472 22 C 0.076 3.924 23 C 0.095 3.905 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.026 0.974 29 H 0.258 0.742 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.181 0.819 37 H 0.100 0.900 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 7.932 1.577 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.136 4.136 3 C 0.115 3.885 4 H 0.016 0.984 5 C -0.568 4.568 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.254 5.254 14 C -0.089 4.089 15 C -0.046 4.046 16 O -0.250 6.250 17 C -0.017 4.017 18 C -0.128 4.128 19 C -0.175 4.175 20 C -0.084 4.084 21 N -0.183 5.183 22 C -0.064 4.064 23 C -0.033 4.033 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.172 0.828 35 H 0.190 0.810 36 H 0.198 0.802 37 H 0.117 0.883 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.859 6.917 2.160 9.319 hybrid contribution 1.565 0.755 -1.410 2.238 sum -4.295 7.672 0.749 8.824 Atomic orbital electron populations 1.22283 0.96360 1.00416 1.02162 1.21316 0.94560 0.98827 0.98888 1.19196 0.93849 0.90987 0.84486 0.98393 1.21825 0.92401 1.42113 1.00487 0.90925 1.25644 1.01671 0.95103 0.95807 1.70092 1.36218 1.43340 1.05661 0.85729 0.81338 0.78699 0.76975 1.20663 1.21610 1.18515 1.61840 1.00526 1.27560 1.35469 1.22143 0.98570 0.91007 0.97173 1.23424 0.84358 0.95442 1.01331 1.86213 1.28126 1.48229 1.62452 1.19722 0.94934 0.95223 0.91840 1.21974 0.98533 1.01479 0.90841 1.22377 0.96975 0.96635 1.01547 1.23320 0.98356 0.93696 0.93032 1.67559 1.15477 1.30808 1.04459 1.22706 0.93443 0.91809 0.98443 1.21802 0.92117 0.99265 0.90153 0.90581 0.95041 0.92569 0.93644 0.95487 0.93319 0.89257 0.90350 0.86593 0.92682 0.82752 0.81036 0.80169 0.88250 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.61 8.49 71.98 0.61 -6.00 16 2 C -0.10 -4.81 5.49 30.59 0.17 -4.64 16 3 C 0.22 10.79 0.87 44.17 0.04 10.83 16 4 H 0.00 -0.07 5.24 -2.39 -0.01 -0.08 16 5 C -0.53 -27.38 6.10 25.60 0.16 -27.23 16 6 H 0.07 3.61 5.22 -2.91 -0.02 3.59 16 7 C 0.02 0.92 5.30 84.65 0.45 1.37 16 8 N -0.91 -51.92 11.74 21.45 0.25 -51.67 16 9 Si 0.95 42.28 29.54 68.60 2.03 44.30 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.53 -22.27 4.67 -884.11 -4.13 -26.40 16 14 C 0.04 1.48 4.92 85.93 0.42 1.90 16 15 C 0.03 1.12 6.07 71.44 0.43 1.55 16 16 O -0.33 -12.46 10.05 -94.11 -0.95 -13.41 16 17 C 0.03 1.10 5.35 22.44 0.12 1.22 16 18 C -0.10 -3.30 10.15 22.55 0.23 -3.07 16 19 C -0.16 -4.39 10.11 22.37 0.23 -4.17 16 20 C 0.07 2.29 11.17 84.68 0.95 3.24 16 21 N -0.47 -17.82 7.22 -182.83 -1.32 -19.14 16 22 C 0.08 2.96 3.71 42.88 0.16 3.12 16 23 C 0.10 3.61 5.09 85.93 0.44 4.05 16 24 H 0.08 3.33 4.67 -2.39 -0.01 3.32 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 2.21 5.54 -2.39 -0.01 2.20 16 27 H 0.04 2.53 6.43 -2.39 -0.02 2.52 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.09 3.45 5.78 -2.39 -0.01 3.44 16 31 H 0.08 2.54 7.90 -2.39 -0.02 2.52 16 32 H 0.12 3.58 8.14 -2.38 -0.02 3.56 16 33 H 0.05 2.48 5.67 -2.38 -0.01 2.47 16 34 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 35 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 36 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.10 3.73 4.96 -2.39 -0.01 3.72 16 38 H 0.09 3.03 7.76 -2.39 -0.02 3.01 16 Total: -1.00 -61.96 283.43 1.36 -60.60 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 1.08 Total: 23.56 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.40 Total: -17.83 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -5.20 Total: -97.22 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.95 Total: -13.41 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -61.96 1.36 -60.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716513905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.153 kcal (2) G-P(sol) polarization free energy of solvation -61.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds