Wall clock time and date at job start Mon Mar 30 2020 04:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 C 1.52993 * 109.47307 * 239.99567 * 2 1 3 5 5 C 1.50695 * 109.47284 * 176.77997 * 4 2 1 6 6 H 1.08007 * 120.00186 * 355.30958 * 5 4 2 7 7 C 1.37877 * 120.00303 * 175.31206 * 5 4 2 8 8 N 1.31514 * 120.00327 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99863 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47285 * 89.99907 * 9 7 5 11 11 H 1.48510 * 109.47127 * 210.00364 * 9 7 5 12 12 H 1.48504 * 109.46870 * 329.99911 * 9 7 5 13 13 N 1.46903 * 109.46981 * 119.99595 * 2 1 3 14 14 C 1.46026 * 110.99866 * 54.68381 * 13 2 1 15 15 C 1.51361 * 113.61778 * 165.97865 * 14 13 2 16 16 O 1.43349 * 110.67604 * 65.09096 * 15 14 13 17 17 C 1.36003 * 115.30867 * 274.57112 * 16 15 14 18 18 C 1.38999 * 120.41119 * 250.22042 * 17 16 15 19 19 C 1.38662 * 118.02963 * 177.90048 * 18 17 16 20 20 C 1.38254 * 119.25885 * 359.97438 * 19 18 17 21 21 N 1.31953 * 121.01462 * 0.40583 * 20 19 18 22 22 C 1.31797 * 121.43191 * 359.93664 * 21 20 19 23 23 C 1.46676 * 111.00038 * 288.60109 * 13 2 1 24 24 H 1.09001 * 109.46957 * 63.50189 * 1 2 3 25 25 H 1.09001 * 109.46918 * 183.50189 * 1 2 3 26 26 H 1.08995 * 109.47196 * 303.49874 * 1 2 3 27 27 H 1.09004 * 109.47356 * 296.77997 * 4 2 1 28 28 H 1.09004 * 109.47449 * 56.77936 * 4 2 1 29 29 H 0.97003 * 119.99927 * 179.97438 * 8 7 5 30 30 H 1.08999 * 108.66083 * 287.05019 * 14 13 2 31 31 H 1.09007 * 108.65634 * 44.91792 * 14 13 2 32 32 H 1.08994 * 109.23949 * 304.78174 * 15 14 13 33 33 H 1.09004 * 109.20434 * 185.37442 * 15 14 13 34 34 H 1.07995 * 120.98843 * 357.91931 * 18 17 16 35 35 H 1.08004 * 120.37475 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.49295 * 180.42512 * 20 19 18 37 37 H 1.09001 * 109.58115 * 329.37080 * 23 13 2 38 38 H 1.09000 * 109.58145 * 89.64207 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5449 -0.6526 -1.2897 6 1 4.0797 -0.0813 -0.5452 7 6 4.2391 -1.3189 -2.2771 8 7 5.5524 -1.2585 -2.3128 9 14 3.3143 -2.3062 -3.5652 10 1 2.9958 -1.4334 -4.7236 11 1 4.1574 -3.4419 -4.0180 12 1 2.0543 -2.8286 -2.9779 13 7 2.0197 -0.6924 1.1995 14 6 1.4511 -2.0338 1.2982 15 6 2.1549 -2.9183 2.3048 16 8 1.9865 -2.4066 3.6332 17 6 2.8856 -1.4578 4.0091 18 6 3.8547 -1.7455 4.9630 19 6 4.7739 -0.7559 5.2771 20 6 4.6951 0.4672 4.6373 21 7 3.7561 0.7068 3.7418 22 6 2.8614 -0.2069 3.4227 23 6 1.7831 0.1110 2.4036 24 1 -0.3633 0.4585 -0.9197 25 1 -0.3633 -1.0258 0.0628 26 1 -0.3633 0.5672 0.8569 27 1 1.7247 -1.7643 -1.2207 28 1 1.6304 -0.2420 -2.1383 29 1 6.0408 -1.7275 -3.0073 30 1 0.4024 -1.9480 1.5826 31 1 1.5059 -2.5087 0.3185 32 1 3.2179 -2.9575 2.0671 33 1 1.7378 -3.9240 2.2519 34 1 3.8910 -2.7111 5.4452 35 1 5.5434 -0.9388 6.0126 36 1 5.4133 1.2383 4.8740 37 1 1.8215 1.1702 2.1494 38 1 0.8038 -0.1302 2.8171 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716522699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:54 Heat of formation + Delta-G solvation = 12.646641 kcal Electronic energy + Delta-G solvation = -20421.906020 eV Core-core repulsion = 17458.092359 eV Total energy + Delta-G solvation = -2963.813661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68917 -38.38384 -37.22043 -33.22389 -32.24341 -31.43288 -31.03109 -28.41001 -27.60562 -25.79654 -23.66078 -22.81671 -21.92865 -21.23893 -18.96792 -17.73603 -16.85563 -16.58746 -16.15002 -15.40467 -15.22832 -14.77694 -14.30031 -14.13562 -13.54521 -13.35092 -13.00050 -12.74363 -12.66930 -12.30776 -12.24239 -11.99181 -11.72592 -11.53563 -11.03723 -10.83038 -10.56985 -10.41887 -10.25284 -9.67488 -9.61933 -9.51600 -9.10716 -9.04989 -8.49907 -8.44794 -7.63089 -5.92319 -3.86868 1.17127 1.37905 3.32519 3.40689 3.40887 3.55745 4.04355 4.33965 4.51141 4.68894 4.88505 4.97171 5.19484 5.35264 5.37636 5.40664 5.48258 5.52352 5.58052 5.65768 5.67059 5.80982 5.86321 5.99124 6.10672 6.15507 6.19362 6.25236 6.37839 6.47380 6.65164 6.72554 7.07509 7.24724 7.48412 7.71601 7.74068 7.91318 8.19489 8.69919 9.21171 9.69676 11.21675 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.006703 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.796172 B = 4176.411008 C = 4547.780056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.103 3.897 3 H 0.080 0.920 4 C -0.009 4.009 5 C -0.490 4.490 6 H 0.078 0.922 7 C 0.062 3.938 8 N -0.906 5.906 9 Si 0.871 3.129 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.514 5.514 14 C 0.028 3.972 15 C 0.065 3.935 16 O -0.331 6.331 17 C 0.057 3.943 18 C -0.094 4.094 19 C -0.166 4.166 20 C 0.088 3.912 21 N -0.457 5.457 22 C 0.126 3.874 23 C 0.108 3.892 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.019 0.981 28 H 0.016 0.984 29 H 0.259 0.741 30 H 0.033 0.967 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.156 0.844 37 H 0.090 0.910 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -1.206 13.189 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.004 4.004 3 H 0.098 0.902 4 C -0.047 4.047 5 C -0.528 4.528 6 H 0.096 0.904 7 C -0.138 4.138 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.238 5.238 14 C -0.100 4.100 15 C -0.009 4.009 16 O -0.246 6.246 17 C 0.011 3.989 18 C -0.120 4.120 19 C -0.186 4.186 20 C -0.069 4.069 21 N -0.167 5.167 22 C -0.013 4.013 23 C -0.021 4.021 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.108 0.892 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.673 -0.611 12.713 14.371 hybrid contribution -0.895 -1.354 -0.419 1.676 sum -7.567 -1.965 12.295 14.570 Atomic orbital electron populations 1.22602 0.99306 1.01412 1.01346 1.21729 0.90026 0.98461 0.90226 0.90191 1.19752 0.98142 0.95250 0.91515 1.21037 0.89050 1.30448 1.12305 0.90358 1.25014 0.94654 0.96581 0.97520 1.69918 1.06120 1.44195 1.34428 0.86928 0.80136 0.80358 0.82626 1.20529 1.21630 1.19337 1.60744 1.60579 1.01313 1.01127 1.22158 0.95902 0.91177 1.00734 1.22794 1.02279 0.96428 0.79422 1.86253 1.51220 1.54286 1.32877 1.19419 0.91960 0.89810 0.97726 1.21644 0.92105 1.00097 0.98157 1.22026 1.00014 0.94412 1.02149 1.22748 0.95915 0.96057 0.92155 1.67585 1.02492 1.33884 1.12742 1.21810 0.94872 0.89373 0.95293 1.21024 0.92803 0.99257 0.89003 0.92230 0.92806 0.93684 0.96340 0.96585 0.93074 0.94882 0.88397 0.91042 0.88102 0.84511 0.84676 0.82692 0.89159 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 8.60 37.16 0.32 -2.60 16 2 C 0.10 1.99 2.21 -67.71 -0.15 1.84 16 3 H 0.08 1.62 7.75 -51.93 -0.40 1.21 16 4 C -0.01 -0.21 3.44 -27.89 -0.10 -0.31 16 5 C -0.49 -13.79 9.34 -34.44 -0.32 -14.11 16 6 H 0.08 2.47 7.99 -52.48 -0.42 2.05 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.25 13.96 55.43 0.77 -27.47 16 9 Si 0.87 21.55 27.56 -169.99 -4.69 16.86 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.28 6.41 56.52 0.36 -5.92 16 13 N -0.51 -9.78 3.96 -229.40 -0.91 -10.69 16 14 C 0.03 0.48 4.12 -5.13 -0.02 0.46 16 15 C 0.07 1.02 6.64 36.33 0.24 1.26 16 16 O -0.33 -5.30 10.05 -19.75 -0.20 -5.50 16 17 C 0.06 0.93 5.65 -39.32 -0.22 0.71 16 18 C -0.09 -1.29 10.15 -39.14 -0.40 -1.69 16 19 C -0.17 -2.06 10.11 -39.42 -0.40 -2.46 16 20 C 0.09 1.25 11.17 -17.49 -0.20 1.05 16 21 N -0.46 -8.00 10.30 -9.14 -0.09 -8.10 16 22 C 0.13 2.23 6.38 -82.12 -0.52 1.71 16 23 C 0.11 1.85 4.61 -4.59 -0.02 1.83 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.81 6.43 -51.93 -0.33 0.47 16 26 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 27 H 0.02 0.43 4.85 -51.93 -0.25 0.17 16 28 H 0.02 0.37 7.80 -51.93 -0.41 -0.04 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.03 0.51 6.66 -51.93 -0.35 0.16 16 31 H 0.10 1.77 5.78 -51.93 -0.30 1.47 16 32 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.09 1.54 7.53 -51.93 -0.39 1.15 16 38 H 0.05 0.84 7.74 -51.93 -0.40 0.44 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -32.41 301.20 -7.81 -40.22 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.35 Total: 0.74 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.88 Total: -10.60 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.23 Total: -46.27 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.20 Total: -5.50 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.69 Total: 16.86 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.41 -7.81 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716522699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.867 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds