Wall clock time and date at job start Mon Mar 30 2020 04:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 C 1.52993 * 109.47307 * 239.99567 * 2 1 3 5 5 C 1.50695 * 109.47284 * 176.77997 * 4 2 1 6 6 H 1.08007 * 120.00186 * 355.30958 * 5 4 2 7 7 C 1.37877 * 120.00303 * 175.31206 * 5 4 2 8 8 N 1.31514 * 120.00327 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99863 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47285 * 89.99907 * 9 7 5 11 11 H 1.48510 * 109.47127 * 210.00364 * 9 7 5 12 12 H 1.48504 * 109.46870 * 329.99911 * 9 7 5 13 13 N 1.46903 * 109.46981 * 119.99595 * 2 1 3 14 14 C 1.46026 * 110.99866 * 54.68381 * 13 2 1 15 15 C 1.51361 * 113.61778 * 165.97865 * 14 13 2 16 16 O 1.43349 * 110.67604 * 65.09096 * 15 14 13 17 17 C 1.36003 * 115.30867 * 274.57112 * 16 15 14 18 18 C 1.38999 * 120.41119 * 250.22042 * 17 16 15 19 19 C 1.38662 * 118.02963 * 177.90048 * 18 17 16 20 20 C 1.38254 * 119.25885 * 359.97438 * 19 18 17 21 21 N 1.31953 * 121.01462 * 0.40583 * 20 19 18 22 22 C 1.31797 * 121.43191 * 359.93664 * 21 20 19 23 23 C 1.46676 * 111.00038 * 288.60109 * 13 2 1 24 24 H 1.09001 * 109.46957 * 63.50189 * 1 2 3 25 25 H 1.09001 * 109.46918 * 183.50189 * 1 2 3 26 26 H 1.08995 * 109.47196 * 303.49874 * 1 2 3 27 27 H 1.09004 * 109.47356 * 296.77997 * 4 2 1 28 28 H 1.09004 * 109.47449 * 56.77936 * 4 2 1 29 29 H 0.97003 * 119.99927 * 179.97438 * 8 7 5 30 30 H 1.08999 * 108.66083 * 287.05019 * 14 13 2 31 31 H 1.09007 * 108.65634 * 44.91792 * 14 13 2 32 32 H 1.08994 * 109.23949 * 304.78174 * 15 14 13 33 33 H 1.09004 * 109.20434 * 185.37442 * 15 14 13 34 34 H 1.07995 * 120.98843 * 357.91931 * 18 17 16 35 35 H 1.08004 * 120.37475 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.49295 * 180.42512 * 20 19 18 37 37 H 1.09001 * 109.58115 * 329.37080 * 23 13 2 38 38 H 1.09000 * 109.58145 * 89.64207 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5449 -0.6526 -1.2897 6 1 4.0797 -0.0813 -0.5452 7 6 4.2391 -1.3189 -2.2771 8 7 5.5524 -1.2585 -2.3128 9 14 3.3143 -2.3062 -3.5652 10 1 2.9958 -1.4334 -4.7236 11 1 4.1574 -3.4419 -4.0180 12 1 2.0543 -2.8286 -2.9779 13 7 2.0197 -0.6924 1.1995 14 6 1.4511 -2.0338 1.2982 15 6 2.1549 -2.9183 2.3048 16 8 1.9865 -2.4066 3.6332 17 6 2.8856 -1.4578 4.0091 18 6 3.8547 -1.7455 4.9630 19 6 4.7739 -0.7559 5.2771 20 6 4.6951 0.4672 4.6373 21 7 3.7561 0.7068 3.7418 22 6 2.8614 -0.2069 3.4227 23 6 1.7831 0.1110 2.4036 24 1 -0.3633 0.4585 -0.9197 25 1 -0.3633 -1.0258 0.0628 26 1 -0.3633 0.5672 0.8569 27 1 1.7247 -1.7643 -1.2207 28 1 1.6304 -0.2420 -2.1383 29 1 6.0408 -1.7275 -3.0073 30 1 0.4024 -1.9480 1.5826 31 1 1.5059 -2.5087 0.3185 32 1 3.2179 -2.9575 2.0671 33 1 1.7378 -3.9240 2.2519 34 1 3.8910 -2.7111 5.4452 35 1 5.5434 -0.9388 6.0126 36 1 5.4133 1.2383 4.8740 37 1 1.8215 1.1702 2.1494 38 1 0.8038 -0.1302 2.8171 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716522699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:53 Heat of formation + Delta-G solvation = -10.296788 kcal Electronic energy + Delta-G solvation = -20422.900921 eV Core-core repulsion = 17458.092359 eV Total energy + Delta-G solvation = -2964.808563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.88429 -39.67608 -38.53826 -35.05682 -33.78072 -32.64376 -32.51881 -29.99354 -29.04456 -27.09045 -25.00093 -24.48975 -23.17520 -22.63867 -20.48340 -18.93533 -18.78779 -18.06493 -17.30881 -16.78828 -16.54461 -16.29784 -15.80541 -15.54563 -14.89258 -14.71567 -14.49417 -14.12244 -14.01307 -13.89610 -13.66198 -13.43409 -13.10038 -12.94584 -12.58709 -12.47057 -12.13987 -11.84715 -11.65620 -11.55142 -11.36424 -11.10164 -10.69758 -10.66760 -10.27451 -9.67985 -9.00407 -8.17055 -6.16833 0.02014 0.26554 1.37757 1.38955 1.49609 2.38927 2.41743 2.79979 3.12377 3.20140 3.46094 3.74642 3.96994 4.03464 4.07330 4.12201 4.21461 4.35149 4.37448 4.41079 4.47677 4.50484 4.59745 4.73526 4.78627 4.89159 4.99455 5.08773 5.10129 5.13974 5.16301 5.26263 5.51389 5.56489 5.73922 6.22654 6.30799 6.38033 6.50041 6.91125 7.03568 7.43364 9.00840 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.006703 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.796172 B = 4176.411008 C = 4547.780056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.005 4.005 5 C -0.488 4.488 6 H 0.025 0.975 7 C -0.004 4.004 8 N -0.960 5.960 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.241 1.241 13 N -0.543 5.543 14 C 0.028 3.972 15 C 0.069 3.931 16 O -0.329 6.329 17 C 0.036 3.964 18 C -0.096 4.096 19 C -0.151 4.151 20 C 0.074 3.926 21 N -0.494 5.494 22 C 0.095 3.905 23 C 0.115 3.885 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.079 0.921 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -2.670 14.009 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.002 4.002 3 H 0.076 0.924 4 C -0.043 4.043 5 C -0.527 4.527 6 H 0.043 0.957 7 C -0.199 4.199 8 N -0.603 5.603 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.164 1.164 13 N -0.267 5.267 14 C -0.099 4.099 15 C -0.005 4.005 16 O -0.245 6.245 17 C -0.010 4.010 18 C -0.122 4.122 19 C -0.171 4.171 20 C -0.082 4.082 21 N -0.205 5.205 22 C -0.044 4.044 23 C -0.013 4.013 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.183 0.817 35 H 0.196 0.804 36 H 0.200 0.800 37 H 0.097 0.903 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.423 -2.065 13.550 16.088 hybrid contribution -0.215 -0.812 -0.547 1.002 sum -8.638 -2.877 13.003 15.874 Atomic orbital electron populations 1.22443 0.95726 1.02532 1.02669 1.21526 0.92766 0.96761 0.89173 0.92359 1.19692 0.94432 0.96380 0.93769 1.21230 0.91845 1.29012 1.10566 0.95693 1.25985 0.95468 0.98133 1.00289 1.70108 1.08358 1.46004 1.35837 0.85731 0.79478 0.78449 0.79321 1.19650 1.21716 1.16446 1.60636 1.61938 1.02523 1.01587 1.22187 0.97136 0.90098 1.00513 1.22842 1.00633 0.97830 0.79240 1.86247 1.51458 1.54055 1.32695 1.19649 0.93083 0.89498 0.98758 1.22056 0.91264 1.01641 0.97201 1.22480 0.99987 0.92956 1.01656 1.23357 0.95569 0.97830 0.91486 1.67539 1.03672 1.34906 1.14401 1.21908 0.95688 0.90444 0.96395 1.20939 0.93662 0.98310 0.88403 0.91236 0.91728 0.92043 0.95335 0.95811 0.93117 0.92795 0.89648 0.93905 0.84559 0.81723 0.80369 0.80030 0.90272 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.07 8.60 71.98 0.62 -4.45 16 2 C 0.11 4.08 2.21 44.91 0.10 4.18 16 3 H 0.06 2.46 7.75 -2.39 -0.02 2.44 16 4 C -0.01 -0.24 3.44 29.84 0.10 -0.14 16 5 C -0.49 -28.39 9.34 25.60 0.24 -28.16 16 6 H 0.02 1.67 7.99 -2.91 -0.02 1.65 16 7 C 0.00 -0.25 5.47 84.65 0.46 0.22 16 8 N -0.96 -62.04 13.96 21.45 0.30 -61.75 16 9 Si 0.95 44.37 27.56 68.60 1.89 46.26 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.24 -10.16 6.41 99.48 0.64 -9.52 16 13 N -0.54 -20.89 3.96 -879.69 -3.49 -24.38 16 14 C 0.03 0.93 4.12 85.93 0.35 1.28 16 15 C 0.07 2.08 6.64 71.45 0.47 2.55 16 16 O -0.33 -10.12 10.05 -93.59 -0.94 -11.06 16 17 C 0.04 1.17 5.65 22.44 0.13 1.29 16 18 C -0.10 -2.44 10.15 22.55 0.23 -2.21 16 19 C -0.15 -3.39 10.11 22.37 0.23 -3.16 16 20 C 0.07 2.04 11.17 84.68 0.95 2.98 16 21 N -0.49 -17.70 10.30 -182.83 -1.88 -19.58 16 22 C 0.09 3.40 6.38 42.88 0.27 3.67 16 23 C 0.12 4.02 4.61 85.93 0.40 4.42 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 1.74 6.43 -2.39 -0.02 1.72 16 26 H 0.06 1.58 7.65 -2.39 -0.02 1.57 16 27 H 0.03 1.26 4.85 -2.39 -0.01 1.25 16 28 H 0.02 1.05 7.80 -2.38 -0.02 1.03 16 29 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.05 1.53 6.66 -2.39 -0.02 1.51 16 31 H 0.09 2.97 5.78 -2.38 -0.01 2.96 16 32 H 0.04 1.52 7.91 -2.39 -0.02 1.50 16 33 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 35 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.08 2.83 7.53 -2.39 -0.02 2.81 16 38 H 0.07 2.07 7.74 -2.39 -0.02 2.05 16 Total: -1.00 -73.87 301.20 1.41 -72.46 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.98 Total: 15.55 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.55 Total: -17.52 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -5.07 Total: -105.70 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.94 Total: -11.06 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.89 Total: 46.26 kcal Total: -73.87 1.41 -72.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716522699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.162 kcal (2) G-P(sol) polarization free energy of solvation -73.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds