Wall clock time and date at job start Mon Mar 30 2020 04:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47578 * 2 1 4 4 O 1.42903 * 109.46893 * 239.99972 * 2 1 3 5 5 C 1.53001 * 109.47088 * 120.00544 * 2 1 3 6 6 C 1.53505 * 114.17224 * 179.97438 * 5 2 1 7 7 N 1.47485 * 87.93487 * 139.66889 * 6 5 2 8 8 C 1.39851 * 110.99997 * 221.29726 * 7 6 5 9 9 C 1.39603 * 119.84218 * 39.25978 * 8 7 6 10 10 C 1.38051 * 120.55021 * 180.30505 * 9 8 7 11 11 C 1.38741 * 120.22180 * 359.68097 * 10 9 8 12 12 N 1.38867 * 120.16602 * 180.02562 * 11 10 9 13 13 C 1.41566 * 119.66985 * 0.02627 * 11 10 9 14 14 C 1.41024 * 120.26542 * 180.02562 * 13 11 10 15 15 H 1.08007 * 120.00024 * 333.35070 * 14 13 11 16 16 C 1.39880 * 120.00458 * 153.35302 * 14 13 11 17 17 N 1.30905 * 119.99600 * 344.00351 * 16 14 13 18 18 Si 1.86800 * 120.00513 * 164.00451 * 16 14 13 19 19 H 1.48492 * 109.46805 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47234 * 120.00161 * 18 16 14 21 21 H 1.48503 * 109.47030 * 239.99782 * 18 16 14 22 22 C 1.38001 * 119.83605 * 218.97001 * 8 7 6 23 23 C 1.47478 * 87.83266 * 332.99031 * 7 6 5 24 24 H 1.08996 * 109.46982 * 300.00019 * 1 2 3 25 25 H 1.09005 * 109.46927 * 59.99546 * 1 2 3 26 26 H 1.08994 * 109.47144 * 179.97438 * 1 2 3 27 27 H 0.96698 * 114.00028 * 300.00237 * 4 2 1 28 28 H 1.09004 * 113.38396 * 46.91348 * 5 2 1 29 29 H 1.08996 * 113.48235 * 24.89987 * 6 5 2 30 30 H 1.09009 * 113.47660 * 254.43269 * 6 5 2 31 31 H 1.08003 * 119.72384 * 0.03623 * 9 8 7 32 32 H 1.07995 * 119.89274 * 179.70932 * 10 9 8 33 33 H 0.96995 * 119.99627 * 185.15377 * 12 11 10 34 34 H 0.96998 * 119.99859 * 5.15797 * 12 11 10 35 35 H 0.97001 * 119.99962 * 185.01828 * 17 16 14 36 36 H 1.07999 * 120.11871 * 359.97438 * 22 8 7 37 37 H 1.08998 * 113.47739 * 141.78228 * 23 7 6 38 38 H 1.09004 * 113.47238 * 272.24400 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7214 1.2492 6 6 3.5699 -0.7848 1.3578 7 7 3.4253 -0.5163 2.8008 8 6 4.3969 0.3875 3.2422 9 6 4.7562 1.4696 2.4367 10 6 5.7180 2.3671 2.8553 11 6 6.3344 2.2059 4.0877 12 7 7.3014 3.1098 4.5078 13 6 5.9728 1.1154 4.9148 14 6 6.5910 0.9398 6.1701 15 1 7.5865 1.3226 6.3401 16 6 5.9149 0.2699 7.1952 17 7 4.6219 0.0828 7.1132 18 14 6.8570 -0.3578 8.6811 19 1 8.2958 -0.0220 8.5328 20 1 6.3234 0.2803 9.9113 21 1 6.7006 -1.8313 8.7800 22 6 4.9914 0.2088 4.4747 23 6 2.1617 0.1769 2.4881 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7209 -1.5952 -1.2329 28 1 1.5399 -1.6720 1.4343 29 1 4.0773 0.0135 0.8163 30 1 3.9803 -1.7706 1.1386 31 1 4.2808 1.6032 1.4761 32 1 5.9911 3.1978 2.2215 33 1 7.7839 2.9542 5.3347 34 1 7.4941 3.8966 3.9744 35 1 4.1415 -0.3162 7.8554 36 1 4.7073 -0.6266 5.0974 37 1 1.3785 0.0064 3.2268 38 1 2.2932 1.2320 2.2482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719751660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:16 Heat of formation + Delta-G solvation = 8.633111 kcal Electronic energy + Delta-G solvation = -19672.791871 eV Core-core repulsion = 16708.804170 eV Total energy + Delta-G solvation = -2963.987701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37524 -37.65785 -36.60297 -33.53812 -33.02799 -31.04828 -29.52919 -28.56284 -25.71192 -25.41087 -24.67490 -22.35200 -21.36179 -19.96652 -19.11225 -17.25789 -16.59148 -15.87220 -15.64892 -15.49356 -14.99576 -14.77602 -14.51421 -13.67958 -13.42567 -12.90575 -12.75486 -12.53813 -12.37824 -12.17521 -11.94620 -11.68871 -11.39009 -11.17353 -11.04912 -10.94578 -10.60787 -10.46810 -10.18508 -10.09756 -9.66590 -9.53136 -9.14525 -8.99720 -8.08429 -7.36219 -6.64645 -6.23433 -4.12393 2.78246 3.08052 3.13008 3.16340 3.21637 4.00186 4.25028 4.59458 4.69939 4.82974 4.91904 5.22810 5.25337 5.26553 5.47907 5.64886 5.72190 5.88017 5.96938 6.01525 6.03061 6.19144 6.20604 6.23917 6.40009 6.55256 6.85593 7.02445 7.06483 7.25317 7.54799 7.56997 7.65098 7.69491 7.99761 8.14292 8.33635 8.64735 8.84880 8.88064 9.10167 9.16424 10.33989 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.005148 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.798948 B = 5437.310350 C = 6147.234151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.112 3.888 3 H 0.097 0.903 4 O -0.562 6.562 5 C -0.157 4.157 6 C 0.013 3.987 7 N -0.425 5.425 8 C 0.012 3.988 9 C -0.217 4.217 10 C -0.174 4.174 11 C 0.118 3.882 12 N -0.884 5.884 13 C 0.064 3.936 14 C -0.465 4.465 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.799 5.799 18 Si 0.905 3.095 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.274 1.274 22 C -0.103 4.103 23 C 0.017 3.983 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.372 0.628 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.391 0.609 34 H 0.377 0.623 35 H 0.277 0.723 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 -0.565 -8.142 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.053 3.947 3 H 0.115 0.885 4 O -0.367 6.367 5 C -0.176 4.176 6 C -0.115 4.115 7 N -0.144 5.144 8 C -0.083 4.083 9 C -0.238 4.238 10 C -0.198 4.198 11 C 0.017 3.983 12 N -0.426 5.426 13 C 0.059 3.941 14 C -0.496 4.496 15 H 0.090 0.910 16 C -0.141 4.141 17 N -0.426 5.426 18 Si 0.730 3.270 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.199 1.199 22 C -0.125 4.125 23 C -0.111 4.111 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.218 0.782 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.220 0.780 34 H 0.202 0.798 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.980 -0.735 -7.628 9.139 hybrid contribution 0.319 0.249 0.547 0.681 sum -4.661 -0.486 -7.081 8.491 Atomic orbital electron populations 1.22469 0.96584 1.02342 1.02554 1.21919 0.92631 0.96372 0.83776 0.88548 1.86583 1.77417 1.28859 1.43841 1.23556 0.98003 1.00462 0.95573 1.23843 0.94315 1.02240 0.91076 1.66716 1.01973 1.31383 1.14286 1.18912 0.98545 0.94031 0.96785 1.20425 1.04304 0.99235 0.99884 1.19823 1.02678 1.01422 0.95910 1.18023 0.94047 0.91849 0.94405 1.41910 1.45034 1.26796 1.28814 1.17190 0.94179 0.90205 0.92558 1.19130 1.01888 1.32614 0.95947 0.90958 1.25769 0.94668 0.93890 0.99792 1.69830 1.07595 1.33789 1.31369 0.86323 0.80739 0.79282 0.80642 1.18728 1.20265 1.19881 1.20831 0.98705 0.99657 0.93258 1.23796 0.95000 0.96982 0.95346 0.91373 0.92189 0.92422 0.78163 0.88457 0.90436 0.90787 0.89364 0.89530 0.78030 0.79814 0.91185 0.85659 0.90477 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.53 37.16 0.35 -1.42 16 2 C 0.11 1.35 3.42 -26.73 -0.09 1.26 16 3 H 0.10 1.26 7.90 -51.93 -0.41 0.85 16 4 O -0.56 -6.82 13.15 -35.23 -0.46 -7.29 16 5 C -0.16 -2.18 3.66 -90.09 -0.33 -2.51 16 6 C 0.01 0.23 6.89 -7.55 -0.05 0.18 16 7 N -0.42 -8.78 6.44 -180.59 -1.16 -9.95 16 8 C 0.01 0.29 5.23 -83.78 -0.44 -0.14 16 9 C -0.22 -4.86 7.85 -39.14 -0.31 -5.17 16 10 C -0.17 -3.93 9.87 -39.46 -0.39 -4.32 16 11 C 0.12 2.83 6.79 -83.22 -0.56 2.26 16 12 N -0.88 -17.67 8.97 32.75 0.29 -17.38 16 13 C 0.06 1.70 5.57 -106.66 -0.59 1.10 16 14 C -0.46 -12.15 8.51 -37.91 -0.32 -12.47 16 15 H 0.07 1.79 6.66 -52.48 -0.35 1.44 16 16 C 0.08 1.90 5.16 -17.33 -0.09 1.81 16 17 N -0.80 -21.14 10.98 55.54 0.61 -20.53 16 18 Si 0.90 18.98 29.59 -169.99 -5.03 13.95 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.10 -2.74 8.57 -38.75 -0.33 -3.07 16 23 C 0.02 0.29 7.11 -7.55 -0.05 0.23 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.37 3.12 9.05 45.56 0.41 3.53 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.40 5.63 -51.93 -0.29 1.11 16 30 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.09 1.79 6.01 -52.48 -0.32 1.47 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.39 7.64 7.05 -40.82 -0.29 7.36 16 34 H 0.38 6.32 8.84 -40.82 -0.36 5.96 16 35 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 36 H 0.13 3.56 6.25 -52.49 -0.33 3.23 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.24 6.60 -51.93 -0.34 0.90 16 LS Contribution 307.79 15.07 4.64 4.64 Total: -1.00 -29.27 307.79 -8.69 -37.97 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -4.37 Total: 20.86 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -3.21 Total: -22.26 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.26 Total: -47.86 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.46 Total: -7.29 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.27 -8.69 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719751660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.599 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds