Wall clock time and date at job start Mon Mar 30 2020 04:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47578 * 2 1 4 4 O 1.42903 * 109.46893 * 239.99972 * 2 1 3 5 5 C 1.53001 * 109.47088 * 120.00544 * 2 1 3 6 6 C 1.53505 * 114.17224 * 179.97438 * 5 2 1 7 7 N 1.47485 * 87.93487 * 139.66889 * 6 5 2 8 8 C 1.39851 * 110.99997 * 221.29726 * 7 6 5 9 9 C 1.39603 * 119.84218 * 39.25978 * 8 7 6 10 10 C 1.38051 * 120.55021 * 180.30505 * 9 8 7 11 11 C 1.38741 * 120.22180 * 359.68097 * 10 9 8 12 12 N 1.38867 * 120.16602 * 180.02562 * 11 10 9 13 13 C 1.41566 * 119.66985 * 0.02627 * 11 10 9 14 14 C 1.41024 * 120.26542 * 180.02562 * 13 11 10 15 15 H 1.08007 * 120.00024 * 333.35070 * 14 13 11 16 16 C 1.39880 * 120.00458 * 153.35302 * 14 13 11 17 17 N 1.30905 * 119.99600 * 344.00351 * 16 14 13 18 18 Si 1.86800 * 120.00513 * 164.00451 * 16 14 13 19 19 H 1.48492 * 109.46805 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47234 * 120.00161 * 18 16 14 21 21 H 1.48503 * 109.47030 * 239.99782 * 18 16 14 22 22 C 1.38001 * 119.83605 * 218.97001 * 8 7 6 23 23 C 1.47478 * 87.83266 * 332.99031 * 7 6 5 24 24 H 1.08996 * 109.46982 * 300.00019 * 1 2 3 25 25 H 1.09005 * 109.46927 * 59.99546 * 1 2 3 26 26 H 1.08994 * 109.47144 * 179.97438 * 1 2 3 27 27 H 0.96698 * 114.00028 * 300.00237 * 4 2 1 28 28 H 1.09004 * 113.38396 * 46.91348 * 5 2 1 29 29 H 1.08996 * 113.48235 * 24.89987 * 6 5 2 30 30 H 1.09009 * 113.47660 * 254.43269 * 6 5 2 31 31 H 1.08003 * 119.72384 * 0.03623 * 9 8 7 32 32 H 1.07995 * 119.89274 * 179.70932 * 10 9 8 33 33 H 0.96995 * 119.99627 * 185.15377 * 12 11 10 34 34 H 0.96998 * 119.99859 * 5.15797 * 12 11 10 35 35 H 0.97001 * 119.99962 * 185.01828 * 17 16 14 36 36 H 1.07999 * 120.11871 * 359.97438 * 22 8 7 37 37 H 1.08998 * 113.47739 * 141.78228 * 23 7 6 38 38 H 1.09004 * 113.47238 * 272.24400 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7214 1.2492 6 6 3.5699 -0.7848 1.3578 7 7 3.4253 -0.5163 2.8008 8 6 4.3969 0.3875 3.2422 9 6 4.7562 1.4696 2.4367 10 6 5.7180 2.3671 2.8553 11 6 6.3344 2.2059 4.0877 12 7 7.3014 3.1098 4.5078 13 6 5.9728 1.1154 4.9148 14 6 6.5910 0.9398 6.1701 15 1 7.5865 1.3226 6.3401 16 6 5.9149 0.2699 7.1952 17 7 4.6219 0.0828 7.1132 18 14 6.8570 -0.3578 8.6811 19 1 8.2958 -0.0220 8.5328 20 1 6.3234 0.2803 9.9113 21 1 6.7006 -1.8313 8.7800 22 6 4.9914 0.2088 4.4747 23 6 2.1617 0.1769 2.4881 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7209 -1.5952 -1.2329 28 1 1.5399 -1.6720 1.4343 29 1 4.0773 0.0135 0.8163 30 1 3.9803 -1.7706 1.1386 31 1 4.2808 1.6032 1.4761 32 1 5.9911 3.1978 2.2215 33 1 7.7839 2.9542 5.3347 34 1 7.4941 3.8966 3.9744 35 1 4.1415 -0.3162 7.8554 36 1 4.7073 -0.6266 5.0974 37 1 1.3785 0.0064 3.2268 38 1 2.2932 1.2320 2.2482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719751660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:15 Heat of formation + Delta-G solvation = -13.750802 kcal Electronic energy + Delta-G solvation = -19673.762510 eV Core-core repulsion = 16708.804170 eV Total energy + Delta-G solvation = -2964.958340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.82612 -39.27488 -37.78148 -35.41360 -34.65446 -32.15124 -31.41988 -29.99111 -27.41254 -26.84081 -26.30495 -23.52616 -23.16700 -21.43865 -20.65971 -18.96814 -18.09619 -17.36767 -17.30306 -16.87021 -16.43343 -16.22704 -15.81914 -15.12399 -14.86487 -14.42310 -14.33821 -14.13418 -13.73625 -13.62494 -13.30007 -13.11472 -12.87665 -12.76368 -12.71739 -12.27865 -12.15305 -11.77198 -11.72391 -11.41762 -11.37159 -11.01288 -10.81218 -10.72639 -9.63321 -9.27819 -8.52938 -8.02013 -6.07167 0.98153 1.22464 1.39717 1.50065 1.53525 2.24367 2.79359 3.17760 3.27951 3.60334 3.72960 3.74685 3.89414 4.21954 4.33445 4.38551 4.45897 4.55487 4.60001 4.66224 4.77917 4.83995 4.92687 5.07232 5.14823 5.21567 5.28304 5.36493 5.42011 5.42908 5.68979 5.78279 5.90600 6.10251 6.29148 6.44755 6.86367 6.92114 6.96820 7.03776 7.28711 7.51912 8.48070 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.005148 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.798948 B = 5437.310350 C = 6147.234151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 H 0.085 0.915 4 O -0.574 6.574 5 C -0.125 4.125 6 C 0.011 3.989 7 N -0.455 5.455 8 C 0.010 3.990 9 C -0.210 4.210 10 C -0.182 4.182 11 C 0.111 3.889 12 N -0.872 5.872 13 C 0.030 3.970 14 C -0.492 4.492 15 H 0.078 0.922 16 C 0.031 3.969 17 N -0.837 5.837 18 Si 0.978 3.022 19 H -0.256 1.256 20 H -0.269 1.269 21 H -0.274 1.274 22 C -0.135 4.135 23 C 0.013 3.987 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.389 0.611 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.394 0.606 34 H 0.394 0.606 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 -0.315 -9.333 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 H 0.103 0.897 4 O -0.382 6.382 5 C -0.144 4.144 6 C -0.117 4.117 7 N -0.174 5.174 8 C -0.086 4.086 9 C -0.231 4.231 10 C -0.206 4.206 11 C 0.008 3.992 12 N -0.414 5.414 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.096 0.904 16 C -0.182 4.182 17 N -0.465 5.465 18 Si 0.800 3.200 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.199 1.199 22 C -0.156 4.156 23 C -0.114 4.114 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.238 0.762 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.222 0.778 34 H 0.222 0.778 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.307 -0.464 -8.842 10.323 hybrid contribution 0.394 0.186 0.785 0.898 sum -4.913 -0.279 -8.057 9.441 Atomic orbital electron populations 1.22407 0.94477 1.03537 1.02932 1.21783 0.94116 0.95445 0.82657 0.89695 1.86558 1.77821 1.30393 1.43389 1.23439 0.95531 1.00428 0.94954 1.23869 0.96972 1.02028 0.88837 1.66700 1.02625 1.31532 1.16568 1.19077 0.98714 0.94780 0.96004 1.20714 1.03732 0.98297 1.00406 1.20193 1.02324 1.02266 0.95816 1.18188 0.94577 0.91807 0.94591 1.41799 1.43882 1.26705 1.29046 1.17535 0.95028 0.91413 0.93565 1.19407 1.02347 1.34041 0.96533 0.90393 1.26618 0.95317 0.93543 1.02704 1.69934 1.09179 1.34855 1.32500 0.85223 0.79519 0.78299 0.76990 1.17906 1.19402 1.19930 1.20747 1.00606 0.99733 0.94548 1.23823 0.93344 0.97228 0.97042 0.91385 0.91444 0.90869 0.76166 0.86827 0.91142 0.90496 0.87027 0.86547 0.77787 0.77752 0.90914 0.88654 0.90532 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.53 71.98 0.69 -2.22 16 2 C 0.12 2.57 3.42 30.60 0.10 2.68 16 3 H 0.09 2.05 7.90 -2.39 -0.02 2.03 16 4 O -0.57 -12.31 13.15 -148.98 -1.96 -14.27 16 5 C -0.12 -3.22 3.66 -10.45 -0.04 -3.26 16 6 C 0.01 0.36 6.89 83.57 0.58 0.94 16 7 N -0.45 -18.94 6.44 -725.26 -4.67 -23.61 16 8 C 0.01 0.46 5.23 38.13 0.20 0.66 16 9 C -0.21 -9.27 7.85 22.55 0.18 -9.09 16 10 C -0.18 -7.99 9.87 22.35 0.22 -7.77 16 11 C 0.11 5.31 6.79 38.97 0.26 5.57 16 12 N -0.87 -34.02 8.97 -50.30 -0.45 -34.47 16 13 C 0.03 1.63 5.57 -21.18 -0.12 1.51 16 14 C -0.49 -26.42 8.51 23.35 0.20 -26.22 16 15 H 0.08 3.92 6.66 -2.91 -0.02 3.90 16 16 C 0.03 1.60 5.16 85.23 0.44 2.04 16 17 N -0.84 -46.08 10.98 21.82 0.24 -45.84 16 18 Si 0.98 39.65 29.59 68.60 2.03 41.68 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 22 C -0.13 -7.47 8.57 22.81 0.20 -7.27 16 23 C 0.01 0.45 7.11 83.57 0.59 1.04 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.39 5.26 9.05 -74.06 -0.67 4.59 16 28 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.45 5.63 -2.39 -0.01 2.44 16 30 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.11 4.34 6.01 -2.91 -0.02 4.32 16 32 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.39 15.15 7.05 -92.71 -0.65 14.50 16 34 H 0.39 12.48 8.84 -92.71 -0.82 11.67 16 35 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 36 H 0.10 5.77 6.25 -2.91 -0.02 5.75 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.07 2.27 6.60 -2.39 -0.02 2.26 16 Total: -1.00 -64.92 307.79 -2.34 -67.27 By element: Atomic # 1 Polarization: 51.68 SS G_CDS: -1.03 Total: 50.64 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 3.50 Total: -41.39 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -4.88 Total: -103.92 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.96 Total: -14.27 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -64.92 -2.34 -67.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719751660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.517 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds