Wall clock time and date at job start Mon Mar 30 2020 04:52:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42902 * 114.00430 * 2 1
4 4 C 1.50697 * 109.47364 * 179.97438 * 3 2 1
5 5 N 1.29738 * 120.00179 * 23.25307 * 4 3 2
6 6 N 1.40107 * 119.99926 * 12.97600 * 5 4 3
7 7 C 1.46499 * 119.99802 * 185.23585 * 6 5 4
8 8 H 1.08996 * 109.47205 * 30.00104 * 7 6 5
9 9 C 1.52995 * 109.47289 * 269.99889 * 7 6 5
10 10 C 1.50707 * 109.46898 * 150.00094 * 7 6 5
11 11 H 1.07998 * 119.99765 * 359.97438 * 10 7 6
12 12 C 1.37876 * 120.00010 * 179.97438 * 10 7 6
13 13 N 1.31516 * 119.99814 * 0.02562 * 12 10 7
14 14 Si 1.86800 * 120.00140 * 180.02562 * 12 10 7
15 15 H 1.48500 * 109.47114 * 59.99763 * 14 12 10
16 16 H 1.48492 * 109.47038 * 180.02562 * 14 12 10
17 17 H 1.48501 * 109.46691 * 300.00146 * 14 12 10
18 18 C 1.47497 * 119.99539 * 203.25540 * 4 3 2
19 19 C 1.39669 * 120.15840 * 359.72353 * 18 4 3
20 20 C 1.37945 * 119.84253 * 179.71967 * 19 18 4
21 21 C 1.38369 * 120.15288 * 0.55882 * 20 19 18
22 22 C 1.38380 * 120.31385 * 359.71814 * 21 20 19
23 23 C 1.37932 * 120.15556 * 359.97438 * 22 21 20
24 24 H 1.08992 * 109.46852 * 300.00330 * 1 2 3
25 25 H 1.09001 * 109.46455 * 60.00035 * 1 2 3
26 26 H 1.09001 * 109.46909 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.46728 * 59.99439 * 3 2 1
28 28 H 1.08999 * 109.46893 * 300.00476 * 3 2 1
29 29 H 0.97001 * 119.99654 * 5.23925 * 6 5 4
30 30 H 1.09005 * 109.47267 * 60.00036 * 9 7 6
31 31 H 1.08998 * 109.47464 * 180.02562 * 9 7 6
32 32 H 1.09004 * 109.46960 * 300.00463 * 9 7 6
33 33 H 0.96998 * 119.99833 * 180.02562 * 13 12 10
34 34 H 1.08004 * 120.08655 * 359.97438 * 19 18 4
35 35 H 1.07991 * 119.92571 * 180.27249 * 20 19 18
36 36 H 1.07994 * 119.84252 * 179.69516 * 21 20 19
37 37 H 1.07995 * 119.91723 * 179.97438 * 22 21 20
38 38 H 1.07997 * 120.07574 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0104 1.3054 0.0000
4 6 3.5126 1.1864 0.0006
5 7 4.0780 0.1060 -0.4425
6 7 3.3283 -0.8308 -1.1659
7 6 3.9354 -2.1022 -1.5672
8 1 4.6916 -2.3903 -0.8370
9 6 4.5880 -1.9443 -2.9420
10 6 2.8716 -3.1675 -1.6355
11 1 1.8459 -2.9220 -1.4028
12 6 3.2077 -4.4554 -1.9951
13 7 4.4568 -4.7544 -2.2780
14 14 1.8889 -5.7756 -2.0805
15 1 0.8587 -5.3827 -3.0753
16 1 2.5043 -7.0644 -2.4872
17 1 1.2554 -5.9294 -0.7462
18 6 4.3402 2.2982 0.5051
19 6 3.7352 3.4650 0.9776
20 6 4.5153 4.4985 1.4534
21 6 5.8944 4.3857 1.4524
22 6 6.5007 3.2349 0.9805
23 6 5.7329 2.1911 0.5077
24 1 -0.3633 0.5139 0.8899
25 1 -0.3632 0.5138 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 1.6887 1.8464 0.8900
28 1 1.6887 1.8464 -0.8899
29 1 2.4072 -0.6375 -1.4010
30 1 5.3574 -1.1738 -2.8926
31 1 5.0393 -2.8904 -3.2408
32 1 3.8317 -1.6562 -3.6722
33 1 4.6932 -5.6603 -2.5313
34 1 2.6591 3.5564 0.9744
35 1 4.0487 5.3995 1.8231
36 1 6.5004 5.1999 1.8215
37 1 7.5776 3.1539 0.9823
38 1 6.2075 1.2937 0.1392
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000790170675.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:41
Heat of formation + Delta-G solvation = 31.395338 kcal
Electronic energy + Delta-G solvation = -19386.309765 eV
Core-core repulsion = 16423.309108 eV
Total energy + Delta-G solvation = -2963.000657 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.15827 -38.00022 -35.87304 -34.17608 -32.00876 -30.81520 -30.08762 -28.10616
-26.73923 -25.42967 -25.08966 -22.77728 -22.01765 -20.34662 -19.32722 -17.40169
-16.36098 -16.07462 -15.86162 -15.60382 -15.06788 -14.72854 -14.24250 -13.63485
-13.34022 -13.28505 -13.15214 -12.91487 -12.43114 -12.33139 -12.06695 -11.35756
-11.31082 -11.11205 -10.96373 -10.89446 -10.80776 -10.47124 -10.20349 -10.16595
-9.59964 -9.24400 -8.97096 -8.76239 -8.68097 -8.42686 -6.57928 -6.07362
-4.15015 1.28394 1.61390 2.95229 3.28030 3.32632 3.34230 3.76035
4.00535 4.21930 4.43121 5.01483 5.11119 5.12880 5.24232 5.28980
5.32750 5.39954 5.50786 5.58377 5.63399 5.76882 5.83652 5.89187
6.21907 6.23190 6.58978 6.68114 6.78118 6.83657 7.04929 7.14942
7.18367 7.21147 7.30296 7.64193 7.83094 7.94592 8.24070 8.41551
8.93250 9.46880 9.51781 10.98034
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.026120 B = 0.004882 C = 0.004237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1071.722040 B = 5734.089103 C = 6606.521199
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.374 6.374
3 C 0.087 3.913
4 C -0.019 4.019
5 N -0.166 5.166
6 N -0.589 5.589
7 C 0.291 3.709
8 H 0.039 0.961
9 C -0.147 4.147
10 C -0.524 4.524
11 H 0.060 0.940
12 C 0.065 3.935
13 N -0.888 5.888
14 Si 0.901 3.099
15 H -0.277 1.277
16 H -0.286 1.286
17 H -0.277 1.277
18 C 0.015 3.985
19 C -0.126 4.126
20 C -0.118 4.118
21 C -0.137 4.137
22 C -0.117 4.117
23 C -0.103 4.103
24 H 0.039 0.961
25 H 0.040 0.960
26 H 0.089 0.911
27 H 0.060 0.940
28 H 0.052 0.948
29 H 0.384 0.616
30 H 0.013 0.987
31 H 0.090 0.910
32 H 0.025 0.975
33 H 0.264 0.736
34 H 0.119 0.881
35 H 0.118 0.882
36 H 0.115 0.885
37 H 0.119 0.881
38 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.825 15.423 5.145 16.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.291 6.291
3 C 0.008 3.992
4 C -0.205 4.205
5 N 0.016 4.984
6 N -0.332 5.332
7 C 0.188 3.812
8 H 0.057 0.943
9 C -0.207 4.207
10 C -0.563 4.563
11 H 0.078 0.922
12 C -0.137 4.137
13 N -0.526 5.526
14 Si 0.729 3.271
15 H -0.202 1.202
16 H -0.212 1.212
17 H -0.203 1.203
18 C 0.012 3.988
19 C -0.147 4.147
20 C -0.136 4.136
21 C -0.156 4.156
22 C -0.135 4.135
23 C -0.123 4.123
24 H 0.058 0.942
25 H 0.058 0.942
26 H 0.108 0.892
27 H 0.078 0.922
28 H 0.070 0.930
29 H 0.228 0.772
30 H 0.032 0.968
31 H 0.108 0.892
32 H 0.044 0.956
33 H 0.074 0.926
34 H 0.137 0.863
35 H 0.136 0.864
36 H 0.133 0.867
37 H 0.137 0.863
38 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -1.721 14.349 4.960 15.279
hybrid contribution -2.107 -0.201 -0.076 2.118
sum -3.829 14.149 4.883 15.449
Atomic orbital electron populations
1.22777 0.81108 1.03173 0.99532 1.87987 1.19686 1.26852 1.94568
1.21593 0.91967 0.85353 1.00290 1.21991 0.90572 0.95794 1.12099
1.73833 1.27801 0.97426 0.99312 1.49428 1.14152 1.17443 1.52133
1.18577 0.93569 0.77044 0.92002 0.94300 1.22173 0.98212 1.01290
0.99005 1.21218 0.94604 0.93495 1.47000 0.92180 1.24854 0.95632
0.98266 0.94947 1.69881 1.16621 1.20112 1.46004 0.86511 0.81512
0.80615 0.78468 1.20247 1.21153 1.20254 1.18140 0.92390 0.91484
0.96760 1.21117 0.99551 0.93344 1.00665 1.20927 0.93900 0.98453
1.00340 1.21093 0.94788 0.98075 1.01691 1.21070 0.99693 0.93643
0.99068 1.21349 0.92840 0.99117 0.99015 0.94237 0.94151 0.89232
0.92195 0.93025 0.77208 0.96768 0.89186 0.95599 0.92625 0.86299
0.86442 0.86653 0.86251 0.85000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.41 11.01 101.05 1.11 1.52 16
2 O -0.37 -6.63 7.13 -35.23 -0.25 -6.88 16
3 C 0.09 1.35 5.29 36.00 0.19 1.54 16
4 C -0.02 -0.35 6.95 -79.71 -0.55 -0.90 16
5 N -0.17 -3.58 10.58 35.11 0.37 -3.21 16
6 N -0.59 -13.71 5.22 -5.88 -0.03 -13.74 16
7 C 0.29 7.63 3.23 -69.08 -0.22 7.40 16
8 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16
9 C -0.15 -3.70 9.29 37.16 0.35 -3.36 16
10 C -0.52 -14.38 8.74 -34.44 -0.30 -14.68 16
11 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16
12 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16
13 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16
14 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16
15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
18 C 0.01 0.23 5.87 -105.05 -0.62 -0.39 16
19 C -0.13 -1.62 9.36 -39.15 -0.37 -1.99 16
20 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16
21 C -0.14 -1.55 10.04 -39.48 -0.40 -1.95 16
22 C -0.12 -1.48 10.03 -39.64 -0.40 -1.88 16
23 C -0.10 -1.58 9.58 -39.15 -0.38 -1.96 16
24 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16
25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16
26 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16
27 H 0.06 0.79 6.86 -51.93 -0.36 0.43 16
28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.38 8.60 5.62 -182.59 -1.03 7.58 16
30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16
32 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16
33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
34 H 0.12 1.29 6.52 -52.48 -0.34 0.95 16
35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16
36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16
37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16
38 H 0.13 2.18 7.55 -52.49 -0.40 1.78 16
LS Contribution 319.73 15.07 4.82 4.82
Total: -1.00 -29.82 319.73 -7.77 -37.59
By element:
Atomic # 1 Polarization: 12.72 SS G_CDS: -6.21 Total: 6.51 kcal
Atomic # 6 Polarization: -14.60 SS G_CDS: -2.07 Total: -16.68 kcal
Atomic # 7 Polarization: -42.36 SS G_CDS: 0.97 Total: -41.40 kcal
Atomic # 8 Polarization: -6.63 SS G_CDS: -0.25 Total: -6.88 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal
Total LS contribution 4.82 Total: 4.82 kcal
Total: -29.82 -7.77 -37.59 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000790170675.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.984 kcal
(2) G-P(sol) polarization free energy of solvation -29.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.163 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.395 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds