Wall clock time and date at job start Mon Mar 30 2020 04:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 114.00430 * 2 1 4 4 C 1.50697 * 109.47364 * 179.97438 * 3 2 1 5 5 N 1.29738 * 120.00179 * 23.25307 * 4 3 2 6 6 N 1.40107 * 119.99926 * 12.97600 * 5 4 3 7 7 C 1.46499 * 119.99802 * 185.23585 * 6 5 4 8 8 H 1.08996 * 109.47205 * 30.00104 * 7 6 5 9 9 C 1.52995 * 109.47289 * 269.99889 * 7 6 5 10 10 C 1.50707 * 109.46898 * 150.00094 * 7 6 5 11 11 H 1.07998 * 119.99765 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00010 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99814 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00140 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47114 * 59.99763 * 14 12 10 16 16 H 1.48492 * 109.47038 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46691 * 300.00146 * 14 12 10 18 18 C 1.47497 * 119.99539 * 203.25540 * 4 3 2 19 19 C 1.39669 * 120.15840 * 359.72353 * 18 4 3 20 20 C 1.37945 * 119.84253 * 179.71967 * 19 18 4 21 21 C 1.38369 * 120.15288 * 0.55882 * 20 19 18 22 22 C 1.38380 * 120.31385 * 359.71814 * 21 20 19 23 23 C 1.37932 * 120.15556 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.46852 * 300.00330 * 1 2 3 25 25 H 1.09001 * 109.46455 * 60.00035 * 1 2 3 26 26 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46728 * 59.99439 * 3 2 1 28 28 H 1.08999 * 109.46893 * 300.00476 * 3 2 1 29 29 H 0.97001 * 119.99654 * 5.23925 * 6 5 4 30 30 H 1.09005 * 109.47267 * 60.00036 * 9 7 6 31 31 H 1.08998 * 109.47464 * 180.02562 * 9 7 6 32 32 H 1.09004 * 109.46960 * 300.00463 * 9 7 6 33 33 H 0.96998 * 119.99833 * 180.02562 * 13 12 10 34 34 H 1.08004 * 120.08655 * 359.97438 * 19 18 4 35 35 H 1.07991 * 119.92571 * 180.27249 * 20 19 18 36 36 H 1.07994 * 119.84252 * 179.69516 * 21 20 19 37 37 H 1.07995 * 119.91723 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.07574 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.0780 0.1060 -0.4425 6 7 3.3283 -0.8308 -1.1659 7 6 3.9354 -2.1022 -1.5672 8 1 4.6916 -2.3903 -0.8370 9 6 4.5880 -1.9443 -2.9420 10 6 2.8716 -3.1675 -1.6355 11 1 1.8459 -2.9220 -1.4028 12 6 3.2077 -4.4554 -1.9951 13 7 4.4568 -4.7544 -2.2780 14 14 1.8889 -5.7756 -2.0805 15 1 0.8587 -5.3827 -3.0753 16 1 2.5043 -7.0644 -2.4872 17 1 1.2554 -5.9294 -0.7462 18 6 4.3402 2.2982 0.5051 19 6 3.7352 3.4650 0.9776 20 6 4.5153 4.4985 1.4534 21 6 5.8944 4.3857 1.4524 22 6 6.5007 3.2349 0.9805 23 6 5.7329 2.1911 0.5077 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 2.4072 -0.6375 -1.4010 30 1 5.3574 -1.1738 -2.8926 31 1 5.0393 -2.8904 -3.2408 32 1 3.8317 -1.6562 -3.6722 33 1 4.6932 -5.6603 -2.5313 34 1 2.6591 3.5564 0.9744 35 1 4.0487 5.3995 1.8231 36 1 6.5004 5.1999 1.8215 37 1 7.5776 3.1539 0.9823 38 1 6.2075 1.2937 0.1392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790170675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:41 Heat of formation + Delta-G solvation = 31.395338 kcal Electronic energy + Delta-G solvation = -19386.309765 eV Core-core repulsion = 16423.309108 eV Total energy + Delta-G solvation = -2963.000657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.15827 -38.00022 -35.87304 -34.17608 -32.00876 -30.81520 -30.08762 -28.10616 -26.73923 -25.42967 -25.08966 -22.77728 -22.01765 -20.34662 -19.32722 -17.40169 -16.36098 -16.07462 -15.86162 -15.60382 -15.06788 -14.72854 -14.24250 -13.63485 -13.34022 -13.28505 -13.15214 -12.91487 -12.43114 -12.33139 -12.06695 -11.35756 -11.31082 -11.11205 -10.96373 -10.89446 -10.80776 -10.47124 -10.20349 -10.16595 -9.59964 -9.24400 -8.97096 -8.76239 -8.68097 -8.42686 -6.57928 -6.07362 -4.15015 1.28394 1.61390 2.95229 3.28030 3.32632 3.34230 3.76035 4.00535 4.21930 4.43121 5.01483 5.11119 5.12880 5.24232 5.28980 5.32750 5.39954 5.50786 5.58377 5.63399 5.76882 5.83652 5.89187 6.21907 6.23190 6.58978 6.68114 6.78118 6.83657 7.04929 7.14942 7.18367 7.21147 7.30296 7.64193 7.83094 7.94592 8.24070 8.41551 8.93250 9.46880 9.51781 10.98034 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.004882 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.722040 B = 5734.089103 C = 6606.521199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.087 3.913 4 C -0.019 4.019 5 N -0.166 5.166 6 N -0.589 5.589 7 C 0.291 3.709 8 H 0.039 0.961 9 C -0.147 4.147 10 C -0.524 4.524 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.015 3.985 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.117 4.117 23 C -0.103 4.103 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.384 0.616 30 H 0.013 0.987 31 H 0.090 0.910 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 15.423 5.145 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.008 3.992 4 C -0.205 4.205 5 N 0.016 4.984 6 N -0.332 5.332 7 C 0.188 3.812 8 H 0.057 0.943 9 C -0.207 4.207 10 C -0.563 4.563 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C 0.012 3.988 19 C -0.147 4.147 20 C -0.136 4.136 21 C -0.156 4.156 22 C -0.135 4.135 23 C -0.123 4.123 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.228 0.772 30 H 0.032 0.968 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.721 14.349 4.960 15.279 hybrid contribution -2.107 -0.201 -0.076 2.118 sum -3.829 14.149 4.883 15.449 Atomic orbital electron populations 1.22777 0.81108 1.03173 0.99532 1.87987 1.19686 1.26852 1.94568 1.21593 0.91967 0.85353 1.00290 1.21991 0.90572 0.95794 1.12099 1.73833 1.27801 0.97426 0.99312 1.49428 1.14152 1.17443 1.52133 1.18577 0.93569 0.77044 0.92002 0.94300 1.22173 0.98212 1.01290 0.99005 1.21218 0.94604 0.93495 1.47000 0.92180 1.24854 0.95632 0.98266 0.94947 1.69881 1.16621 1.20112 1.46004 0.86511 0.81512 0.80615 0.78468 1.20247 1.21153 1.20254 1.18140 0.92390 0.91484 0.96760 1.21117 0.99551 0.93344 1.00665 1.20927 0.93900 0.98453 1.00340 1.21093 0.94788 0.98075 1.01691 1.21070 0.99693 0.93643 0.99068 1.21349 0.92840 0.99117 0.99015 0.94237 0.94151 0.89232 0.92195 0.93025 0.77208 0.96768 0.89186 0.95599 0.92625 0.86299 0.86442 0.86653 0.86251 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.63 7.13 -35.23 -0.25 -6.88 16 3 C 0.09 1.35 5.29 36.00 0.19 1.54 16 4 C -0.02 -0.35 6.95 -79.71 -0.55 -0.90 16 5 N -0.17 -3.58 10.58 35.11 0.37 -3.21 16 6 N -0.59 -13.71 5.22 -5.88 -0.03 -13.74 16 7 C 0.29 7.63 3.23 -69.08 -0.22 7.40 16 8 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 9 C -0.15 -3.70 9.29 37.16 0.35 -3.36 16 10 C -0.52 -14.38 8.74 -34.44 -0.30 -14.68 16 11 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 12 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 13 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 14 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.01 0.23 5.87 -105.05 -0.62 -0.39 16 19 C -0.13 -1.62 9.36 -39.15 -0.37 -1.99 16 20 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 21 C -0.14 -1.55 10.04 -39.48 -0.40 -1.95 16 22 C -0.12 -1.48 10.03 -39.64 -0.40 -1.88 16 23 C -0.10 -1.58 9.58 -39.15 -0.38 -1.96 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.79 6.86 -51.93 -0.36 0.43 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.38 8.60 5.62 -182.59 -1.03 7.58 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.12 1.29 6.52 -52.48 -0.34 0.95 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.13 2.18 7.55 -52.49 -0.40 1.78 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -29.82 319.73 -7.77 -37.59 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.21 Total: 6.51 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.07 Total: -16.68 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.97 Total: -41.40 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.25 Total: -6.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.82 -7.77 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790170675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.984 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds