Wall clock time and date at job start Mon Mar 30 2020 04:52:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42902 * 114.00430 * 2 1
4 4 C 1.50697 * 109.47364 * 179.97438 * 3 2 1
5 5 N 1.29738 * 120.00179 * 23.25307 * 4 3 2
6 6 N 1.40107 * 119.99926 * 12.97600 * 5 4 3
7 7 C 1.46499 * 119.99802 * 185.23585 * 6 5 4
8 8 H 1.08996 * 109.47205 * 30.00104 * 7 6 5
9 9 C 1.52995 * 109.47289 * 269.99889 * 7 6 5
10 10 C 1.50707 * 109.46898 * 150.00094 * 7 6 5
11 11 H 1.07998 * 119.99765 * 359.97438 * 10 7 6
12 12 C 1.37876 * 120.00010 * 179.97438 * 10 7 6
13 13 N 1.31516 * 119.99814 * 0.02562 * 12 10 7
14 14 Si 1.86800 * 120.00140 * 180.02562 * 12 10 7
15 15 H 1.48500 * 109.47114 * 59.99763 * 14 12 10
16 16 H 1.48492 * 109.47038 * 180.02562 * 14 12 10
17 17 H 1.48501 * 109.46691 * 300.00146 * 14 12 10
18 18 C 1.47497 * 119.99539 * 203.25540 * 4 3 2
19 19 C 1.39669 * 120.15840 * 359.72353 * 18 4 3
20 20 C 1.37945 * 119.84253 * 179.71967 * 19 18 4
21 21 C 1.38369 * 120.15288 * 0.55882 * 20 19 18
22 22 C 1.38380 * 120.31385 * 359.71814 * 21 20 19
23 23 C 1.37932 * 120.15556 * 359.97438 * 22 21 20
24 24 H 1.08992 * 109.46852 * 300.00330 * 1 2 3
25 25 H 1.09001 * 109.46455 * 60.00035 * 1 2 3
26 26 H 1.09001 * 109.46909 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.46728 * 59.99439 * 3 2 1
28 28 H 1.08999 * 109.46893 * 300.00476 * 3 2 1
29 29 H 0.97001 * 119.99654 * 5.23925 * 6 5 4
30 30 H 1.09005 * 109.47267 * 60.00036 * 9 7 6
31 31 H 1.08998 * 109.47464 * 180.02562 * 9 7 6
32 32 H 1.09004 * 109.46960 * 300.00463 * 9 7 6
33 33 H 0.96998 * 119.99833 * 180.02562 * 13 12 10
34 34 H 1.08004 * 120.08655 * 359.97438 * 19 18 4
35 35 H 1.07991 * 119.92571 * 180.27249 * 20 19 18
36 36 H 1.07994 * 119.84252 * 179.69516 * 21 20 19
37 37 H 1.07995 * 119.91723 * 179.97438 * 22 21 20
38 38 H 1.07997 * 120.07574 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0104 1.3054 0.0000
4 6 3.5126 1.1864 0.0006
5 7 4.0780 0.1060 -0.4425
6 7 3.3283 -0.8308 -1.1659
7 6 3.9354 -2.1022 -1.5672
8 1 4.6916 -2.3903 -0.8370
9 6 4.5880 -1.9443 -2.9420
10 6 2.8716 -3.1675 -1.6355
11 1 1.8459 -2.9220 -1.4028
12 6 3.2077 -4.4554 -1.9951
13 7 4.4568 -4.7544 -2.2780
14 14 1.8889 -5.7756 -2.0805
15 1 0.8587 -5.3827 -3.0753
16 1 2.5043 -7.0644 -2.4872
17 1 1.2554 -5.9294 -0.7462
18 6 4.3402 2.2982 0.5051
19 6 3.7352 3.4650 0.9776
20 6 4.5153 4.4985 1.4534
21 6 5.8944 4.3857 1.4524
22 6 6.5007 3.2349 0.9805
23 6 5.7329 2.1911 0.5077
24 1 -0.3633 0.5139 0.8899
25 1 -0.3632 0.5138 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 1.6887 1.8464 0.8900
28 1 1.6887 1.8464 -0.8899
29 1 2.4072 -0.6375 -1.4010
30 1 5.3574 -1.1738 -2.8926
31 1 5.0393 -2.8904 -3.2408
32 1 3.8317 -1.6562 -3.6722
33 1 4.6932 -5.6603 -2.5313
34 1 2.6591 3.5564 0.9744
35 1 4.0487 5.3995 1.8231
36 1 6.5004 5.1999 1.8215
37 1 7.5776 3.1539 0.9823
38 1 6.2075 1.2937 0.1392
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000790170675.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:40
Heat of formation + Delta-G solvation = 13.482495 kcal
Electronic energy + Delta-G solvation = -19387.086524 eV
Core-core repulsion = 16423.309108 eV
Total energy + Delta-G solvation = -2963.777416 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.32089 -39.18251 -37.44566 -35.91201 -33.71101 -31.91934 -31.53533 -29.39286
-28.20541 -27.26521 -26.57603 -23.98946 -23.06365 -22.19967 -20.70991 -18.87636
-17.89038 -17.41738 -17.15091 -16.99149 -16.50614 -16.17590 -15.32768 -15.22412
-14.63866 -14.59327 -14.34283 -14.17927 -14.14339 -13.81022 -13.34383 -13.13892
-12.90856 -12.72834 -12.41585 -12.33179 -12.17432 -12.08588 -11.97340 -11.84840
-11.10728 -10.90372 -10.58324 -10.44168 -9.87978 -9.75821 -8.25948 -8.07529
-6.31252 0.14951 0.60759 1.41472 1.44163 1.51959 1.66747 2.26703
2.49644 2.78918 3.11489 3.13241 3.82198 4.06082 4.22454 4.26350
4.29480 4.40146 4.46547 4.52387 4.57667 4.67829 4.75978 4.79182
4.82896 4.99942 5.13133 5.16251 5.24488 5.36527 5.54435 5.67443
5.68672 5.72379 5.85329 5.98423 6.13388 6.19469 6.26616 6.52565
6.91818 7.39862 7.92328 8.90043
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.026120 B = 0.004882 C = 0.004237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1071.722040 B = 5734.089103 C = 6606.521199
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.412 6.412
3 C 0.082 3.918
4 C 0.018 3.982
5 N -0.227 5.227
6 N -0.612 5.612
7 C 0.302 3.698
8 H -0.008 1.008
9 C -0.132 4.132
10 C -0.541 4.541
11 H 0.058 0.942
12 C 0.017 3.983
13 N -0.916 5.916
14 Si 0.970 3.030
15 H -0.266 1.266
16 H -0.281 1.281
17 H -0.274 1.274
18 C -0.027 4.027
19 C -0.115 4.115
20 C -0.115 4.115
21 C -0.122 4.122
22 C -0.125 4.125
23 C -0.122 4.122
24 H 0.064 0.936
25 H 0.057 0.943
26 H 0.081 0.919
27 H 0.092 0.908
28 H 0.072 0.928
29 H 0.385 0.615
30 H 0.017 0.983
31 H 0.069 0.931
32 H 0.028 0.972
33 H 0.266 0.734
34 H 0.143 0.857
35 H 0.156 0.844
36 H 0.151 0.849
37 H 0.137 0.863
38 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.344 18.408 6.359 19.954
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.330 6.330
3 C 0.003 3.997
4 C -0.171 4.171
5 N -0.040 5.040
6 N -0.356 5.356
7 C 0.198 3.802
8 H 0.010 0.990
9 C -0.191 4.191
10 C -0.580 4.580
11 H 0.076 0.924
12 C -0.182 4.182
13 N -0.555 5.555
14 Si 0.794 3.206
15 H -0.191 1.191
16 H -0.206 1.206
17 H -0.200 1.200
18 C -0.029 4.029
19 C -0.136 4.136
20 C -0.133 4.133
21 C -0.141 4.141
22 C -0.143 4.143
23 C -0.143 4.143
24 H 0.082 0.918
25 H 0.076 0.924
26 H 0.100 0.900
27 H 0.110 0.890
28 H 0.090 0.910
29 H 0.229 0.771
30 H 0.036 0.964
31 H 0.088 0.912
32 H 0.048 0.952
33 H 0.075 0.925
34 H 0.161 0.839
35 H 0.174 0.826
36 H 0.168 0.832
37 H 0.155 0.845
38 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -3.239 17.350 6.175 18.699
hybrid contribution -1.564 -0.768 -0.260 1.762
sum -4.803 16.582 5.915 18.249
Atomic orbital electron populations
1.22946 0.79046 1.03414 1.01564 1.87946 1.22071 1.28133 1.94859
1.21780 0.90025 0.85240 1.02617 1.22902 0.92808 0.94500 1.06864
1.73843 1.28530 0.98922 1.02732 1.48819 1.14043 1.17191 1.55512
1.18130 0.92376 0.78799 0.90909 0.98961 1.21974 0.98136 1.00139
0.98853 1.21472 0.94738 0.94440 1.47313 0.92378 1.25720 0.97818
1.00366 0.94339 1.70019 1.18452 1.20618 1.46418 0.85441 0.78838
0.77678 0.78614 1.19119 1.20572 1.19954 1.18302 0.92394 0.92296
0.99915 1.21425 1.01053 0.92187 0.98910 1.21409 0.93869 0.99093
0.98946 1.21577 0.95488 0.97869 0.99179 1.21319 1.00621 0.93494
0.98825 1.21343 0.93441 0.99328 1.00166 0.91775 0.92413 0.90030
0.89019 0.91035 0.77076 0.96375 0.91245 0.95250 0.92496 0.83888
0.82598 0.83158 0.84504 0.87797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.66 11.01 113.37 1.25 1.90 16
2 O -0.41 -14.50 7.13 -148.98 -1.06 -15.56 16
3 C 0.08 2.41 5.29 71.23 0.38 2.78 16
4 C 0.02 0.64 6.95 45.31 0.32 0.96 16
5 N -0.23 -10.34 10.58 -42.82 -0.45 -10.79 16
6 N -0.61 -30.13 5.22 -172.52 -0.90 -31.03 16
7 C 0.30 16.90 3.23 44.25 0.14 17.05 16
8 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16
9 C -0.13 -7.00 9.29 71.98 0.67 -6.33 16
10 C -0.54 -30.93 8.74 25.60 0.22 -30.70 16
11 H 0.06 3.26 7.79 -2.91 -0.02 3.23 16
12 C 0.02 0.97 5.30 84.65 0.45 1.42 16
13 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16
14 Si 0.97 43.86 29.54 68.60 2.03 45.89 16
15 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16
16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16
17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
18 C -0.03 -0.82 5.87 -20.14 -0.12 -0.94 16
19 C -0.12 -2.55 9.36 22.55 0.21 -2.34 16
20 C -0.12 -2.03 10.03 22.23 0.22 -1.80 16
21 C -0.12 -2.23 10.04 22.33 0.22 -2.01 16
22 C -0.12 -2.93 10.03 22.23 0.22 -2.70 16
23 C -0.12 -3.80 9.58 22.55 0.22 -3.58 16
24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
27 H 0.09 2.09 6.86 -2.39 -0.02 2.08 16
28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
29 H 0.38 17.99 5.62 -213.32 -1.20 16.79 16
30 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16
31 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16
32 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16
33 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16
34 H 0.14 2.41 6.52 -2.91 -0.02 2.39 16
35 H 0.16 1.62 8.06 -2.92 -0.02 1.60 16
36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16
37 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16
38 H 0.10 3.74 7.55 -2.91 -0.02 3.71 16
Total: -1.00 -69.09 319.73 4.11 -64.98
By element:
Atomic # 1 Polarization: 26.38 SS G_CDS: -0.15 Total: 26.23 kcal
Atomic # 6 Polarization: -30.70 SS G_CDS: 4.40 Total: -26.30 kcal
Atomic # 7 Polarization: -94.14 SS G_CDS: -1.11 Total: -95.25 kcal
Atomic # 8 Polarization: -14.50 SS G_CDS: -1.06 Total: -15.56 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal
Total: -69.09 4.11 -64.98 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000790170675.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.467 kcal
(2) G-P(sol) polarization free energy of solvation -69.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.374 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.482 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds