Wall clock time and date at job start Mon Mar 30 2020 04:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 114.00430 * 2 1 4 4 C 1.50697 * 109.47364 * 179.97438 * 3 2 1 5 5 N 1.29738 * 120.00179 * 23.25307 * 4 3 2 6 6 N 1.40107 * 119.99926 * 12.97600 * 5 4 3 7 7 C 1.46499 * 119.99802 * 185.23585 * 6 5 4 8 8 H 1.08996 * 109.47205 * 30.00104 * 7 6 5 9 9 C 1.52995 * 109.47289 * 269.99889 * 7 6 5 10 10 C 1.50707 * 109.46898 * 150.00094 * 7 6 5 11 11 H 1.07998 * 119.99765 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00010 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99814 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00140 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47114 * 59.99763 * 14 12 10 16 16 H 1.48492 * 109.47038 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46691 * 300.00146 * 14 12 10 18 18 C 1.47497 * 119.99539 * 203.25540 * 4 3 2 19 19 C 1.39669 * 120.15840 * 359.72353 * 18 4 3 20 20 C 1.37945 * 119.84253 * 179.71967 * 19 18 4 21 21 C 1.38369 * 120.15288 * 0.55882 * 20 19 18 22 22 C 1.38380 * 120.31385 * 359.71814 * 21 20 19 23 23 C 1.37932 * 120.15556 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.46852 * 300.00330 * 1 2 3 25 25 H 1.09001 * 109.46455 * 60.00035 * 1 2 3 26 26 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46728 * 59.99439 * 3 2 1 28 28 H 1.08999 * 109.46893 * 300.00476 * 3 2 1 29 29 H 0.97001 * 119.99654 * 5.23925 * 6 5 4 30 30 H 1.09005 * 109.47267 * 60.00036 * 9 7 6 31 31 H 1.08998 * 109.47464 * 180.02562 * 9 7 6 32 32 H 1.09004 * 109.46960 * 300.00463 * 9 7 6 33 33 H 0.96998 * 119.99833 * 180.02562 * 13 12 10 34 34 H 1.08004 * 120.08655 * 359.97438 * 19 18 4 35 35 H 1.07991 * 119.92571 * 180.27249 * 20 19 18 36 36 H 1.07994 * 119.84252 * 179.69516 * 21 20 19 37 37 H 1.07995 * 119.91723 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.07574 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.0780 0.1060 -0.4425 6 7 3.3283 -0.8308 -1.1659 7 6 3.9354 -2.1022 -1.5672 8 1 4.6916 -2.3903 -0.8370 9 6 4.5880 -1.9443 -2.9420 10 6 2.8716 -3.1675 -1.6355 11 1 1.8459 -2.9220 -1.4028 12 6 3.2077 -4.4554 -1.9951 13 7 4.4568 -4.7544 -2.2780 14 14 1.8889 -5.7756 -2.0805 15 1 0.8587 -5.3827 -3.0753 16 1 2.5043 -7.0644 -2.4872 17 1 1.2554 -5.9294 -0.7462 18 6 4.3402 2.2982 0.5051 19 6 3.7352 3.4650 0.9776 20 6 4.5153 4.4985 1.4534 21 6 5.8944 4.3857 1.4524 22 6 6.5007 3.2349 0.9805 23 6 5.7329 2.1911 0.5077 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 2.4072 -0.6375 -1.4010 30 1 5.3574 -1.1738 -2.8926 31 1 5.0393 -2.8904 -3.2408 32 1 3.8317 -1.6562 -3.6722 33 1 4.6932 -5.6603 -2.5313 34 1 2.6591 3.5564 0.9744 35 1 4.0487 5.3995 1.8231 36 1 6.5004 5.1999 1.8215 37 1 7.5776 3.1539 0.9823 38 1 6.2075 1.2937 0.1392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790170675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:40 Heat of formation + Delta-G solvation = 13.482495 kcal Electronic energy + Delta-G solvation = -19387.086524 eV Core-core repulsion = 16423.309108 eV Total energy + Delta-G solvation = -2963.777416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32089 -39.18251 -37.44566 -35.91201 -33.71101 -31.91934 -31.53533 -29.39286 -28.20541 -27.26521 -26.57603 -23.98946 -23.06365 -22.19967 -20.70991 -18.87636 -17.89038 -17.41738 -17.15091 -16.99149 -16.50614 -16.17590 -15.32768 -15.22412 -14.63866 -14.59327 -14.34283 -14.17927 -14.14339 -13.81022 -13.34383 -13.13892 -12.90856 -12.72834 -12.41585 -12.33179 -12.17432 -12.08588 -11.97340 -11.84840 -11.10728 -10.90372 -10.58324 -10.44168 -9.87978 -9.75821 -8.25948 -8.07529 -6.31252 0.14951 0.60759 1.41472 1.44163 1.51959 1.66747 2.26703 2.49644 2.78918 3.11489 3.13241 3.82198 4.06082 4.22454 4.26350 4.29480 4.40146 4.46547 4.52387 4.57667 4.67829 4.75978 4.79182 4.82896 4.99942 5.13133 5.16251 5.24488 5.36527 5.54435 5.67443 5.68672 5.72379 5.85329 5.98423 6.13388 6.19469 6.26616 6.52565 6.91818 7.39862 7.92328 8.90043 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.004882 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.722040 B = 5734.089103 C = 6606.521199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.082 3.918 4 C 0.018 3.982 5 N -0.227 5.227 6 N -0.612 5.612 7 C 0.302 3.698 8 H -0.008 1.008 9 C -0.132 4.132 10 C -0.541 4.541 11 H 0.058 0.942 12 C 0.017 3.983 13 N -0.916 5.916 14 Si 0.970 3.030 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.274 1.274 18 C -0.027 4.027 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.122 4.122 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.385 0.615 30 H 0.017 0.983 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.143 0.857 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 18.408 6.359 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.003 3.997 4 C -0.171 4.171 5 N -0.040 5.040 6 N -0.356 5.356 7 C 0.198 3.802 8 H 0.010 0.990 9 C -0.191 4.191 10 C -0.580 4.580 11 H 0.076 0.924 12 C -0.182 4.182 13 N -0.555 5.555 14 Si 0.794 3.206 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.200 1.200 18 C -0.029 4.029 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.229 0.771 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.239 17.350 6.175 18.699 hybrid contribution -1.564 -0.768 -0.260 1.762 sum -4.803 16.582 5.915 18.249 Atomic orbital electron populations 1.22946 0.79046 1.03414 1.01564 1.87946 1.22071 1.28133 1.94859 1.21780 0.90025 0.85240 1.02617 1.22902 0.92808 0.94500 1.06864 1.73843 1.28530 0.98922 1.02732 1.48819 1.14043 1.17191 1.55512 1.18130 0.92376 0.78799 0.90909 0.98961 1.21974 0.98136 1.00139 0.98853 1.21472 0.94738 0.94440 1.47313 0.92378 1.25720 0.97818 1.00366 0.94339 1.70019 1.18452 1.20618 1.46418 0.85441 0.78838 0.77678 0.78614 1.19119 1.20572 1.19954 1.18302 0.92394 0.92296 0.99915 1.21425 1.01053 0.92187 0.98910 1.21409 0.93869 0.99093 0.98946 1.21577 0.95488 0.97869 0.99179 1.21319 1.00621 0.93494 0.98825 1.21343 0.93441 0.99328 1.00166 0.91775 0.92413 0.90030 0.89019 0.91035 0.77076 0.96375 0.91245 0.95250 0.92496 0.83888 0.82598 0.83158 0.84504 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.90 16 2 O -0.41 -14.50 7.13 -148.98 -1.06 -15.56 16 3 C 0.08 2.41 5.29 71.23 0.38 2.78 16 4 C 0.02 0.64 6.95 45.31 0.32 0.96 16 5 N -0.23 -10.34 10.58 -42.82 -0.45 -10.79 16 6 N -0.61 -30.13 5.22 -172.52 -0.90 -31.03 16 7 C 0.30 16.90 3.23 44.25 0.14 17.05 16 8 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 9 C -0.13 -7.00 9.29 71.98 0.67 -6.33 16 10 C -0.54 -30.93 8.74 25.60 0.22 -30.70 16 11 H 0.06 3.26 7.79 -2.91 -0.02 3.23 16 12 C 0.02 0.97 5.30 84.65 0.45 1.42 16 13 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16 14 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C -0.03 -0.82 5.87 -20.14 -0.12 -0.94 16 19 C -0.12 -2.55 9.36 22.55 0.21 -2.34 16 20 C -0.12 -2.03 10.03 22.23 0.22 -1.80 16 21 C -0.12 -2.23 10.04 22.33 0.22 -2.01 16 22 C -0.12 -2.93 10.03 22.23 0.22 -2.70 16 23 C -0.12 -3.80 9.58 22.55 0.22 -3.58 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.09 2.09 6.86 -2.39 -0.02 2.08 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.38 17.99 5.62 -213.32 -1.20 16.79 16 30 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 32 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.14 2.41 6.52 -2.91 -0.02 2.39 16 35 H 0.16 1.62 8.06 -2.92 -0.02 1.60 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.10 3.74 7.55 -2.91 -0.02 3.71 16 Total: -1.00 -69.09 319.73 4.11 -64.98 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.15 Total: 26.23 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.40 Total: -26.30 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -1.11 Total: -95.25 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.06 Total: -15.56 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.09 4.11 -64.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790170675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.467 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds