Wall clock time and date at job start Mon Mar 30 2020 04:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38824 * 120.35442 * 2 1 4 4 C 1.38385 * 118.48587 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.10926 * 0.02562 * 4 3 2 6 6 O 1.35673 * 119.68072 * 180.02562 * 5 4 3 7 7 C 1.42905 * 116.99877 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.62425 * 333.10938 * 7 6 5 9 9 C 1.55140 * 110.70458 * 96.39704 * 7 6 5 10 10 C 1.54901 * 101.65280 * 154.03831 * 9 7 6 11 11 N 1.47846 * 104.79950 * 322.93072 * 10 9 7 12 12 C 1.46892 * 111.00189 * 146.36195 * 11 10 9 13 13 C 1.50697 * 109.47243 * 49.15985 * 12 11 10 14 14 H 1.07998 * 120.00245 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99986 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47220 * 59.99986 * 17 15 13 19 19 H 1.48498 * 109.47029 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47154 * 299.99970 * 17 15 13 21 21 C 1.47446 * 108.56094 * 24.09455 * 11 10 9 22 22 N 1.32250 * 120.63036 * 359.97438 * 5 4 3 23 23 C 1.31967 * 121.64923 * 0.04888 * 22 5 4 24 24 H 1.08999 * 109.46566 * 90.00211 * 1 2 3 25 25 H 1.08997 * 109.46847 * 209.99601 * 1 2 3 26 26 H 1.08994 * 109.46934 * 330.00369 * 1 2 3 27 27 H 1.08003 * 120.75836 * 359.95391 * 3 2 1 28 28 H 1.07997 * 120.44487 * 179.72743 * 4 3 2 29 29 H 1.09006 * 110.99250 * 272.12982 * 9 7 6 30 30 H 1.08994 * 110.99171 * 35.94361 * 9 7 6 31 31 H 1.09004 * 110.37203 * 204.09879 * 10 9 7 32 32 H 1.09007 * 110.37754 * 81.76049 * 10 9 7 33 33 H 1.09007 * 109.46822 * 169.15847 * 12 11 10 34 34 H 1.08996 * 109.47350 * 289.15522 * 12 11 10 35 35 H 0.96997 * 120.00050 * 180.02562 * 16 15 13 36 36 H 1.09007 * 109.88526 * 239.60754 * 21 11 10 37 37 H 1.08997 * 110.02228 * 118.49846 * 21 11 10 38 38 H 1.07994 * 119.58343 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1979 0.0000 4 6 3.5917 1.1528 0.0005 5 6 4.2276 -0.0823 0.0005 6 8 5.5831 -0.1401 0.0016 7 6 6.1770 -1.4399 0.0021 8 1 5.5087 -2.1672 0.4630 9 6 6.5532 -1.8716 -1.4398 10 6 7.7103 -2.8671 -1.1765 11 7 8.4529 -2.2899 -0.0358 12 6 9.0062 -3.3468 0.8212 13 6 9.7314 -4.3563 -0.0309 14 1 9.7763 -4.2260 -1.1021 15 6 10.3375 -5.4463 0.5570 16 7 10.2832 -5.6048 1.8614 17 14 11.2370 -6.6972 -0.4993 18 1 12.3402 -6.0249 -1.2316 19 1 11.7973 -7.7651 0.3671 20 1 10.2891 -7.2957 -1.4732 21 6 7.5402 -1.4166 0.7248 22 7 3.5242 -1.2023 0.0005 23 6 2.2046 -1.1912 -0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6868 2.1436 -0.0007 28 1 4.1690 2.0655 -0.0039 29 1 5.7154 -2.3675 -1.9301 30 1 6.8971 -1.0191 -2.0254 31 1 8.3556 -2.9390 -2.0520 32 1 7.3145 -3.8483 -0.9141 33 1 9.7023 -2.9078 1.5360 34 1 8.1963 -3.8400 1.3588 35 1 10.7099 -6.3715 2.2749 36 1 7.9317 -0.3995 0.7454 37 1 7.4270 -1.7909 1.7422 38 1 1.6636 -2.1259 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858032017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:29 Heat of formation + Delta-G solvation = 1.006059 kcal Electronic energy + Delta-G solvation = -19128.585106 eV Core-core repulsion = 16164.266671 eV Total energy + Delta-G solvation = -2964.318435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.71386 -38.80097 -36.91305 -33.33497 -32.91701 -31.92355 -30.35878 -28.37849 -26.88431 -26.01007 -23.92531 -22.58498 -22.19319 -20.65969 -19.90398 -18.50398 -16.95931 -16.29408 -15.43482 -15.34687 -15.17771 -14.87257 -14.37832 -14.02203 -13.88287 -13.41448 -13.21733 -12.94382 -12.71791 -12.59268 -12.39403 -12.02519 -11.86074 -11.45707 -11.25008 -10.84063 -10.75243 -10.53889 -10.31501 -10.23586 -9.99265 -9.86375 -9.57466 -9.11598 -8.47997 -8.35442 -7.25588 -6.04376 -4.06217 1.04497 1.15281 3.12082 3.33318 3.37244 3.40262 3.65974 4.23049 4.42457 4.60166 4.73798 4.80942 4.91951 5.01937 5.06651 5.28496 5.31271 5.32230 5.35293 5.52973 5.61566 5.64273 5.80003 5.87149 5.95368 6.10981 6.14726 6.23014 6.31951 6.50865 6.65716 6.71247 7.20543 7.37265 7.41702 7.75294 7.82607 7.99261 8.18132 8.49827 9.00835 9.58252 11.06983 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041735 B = 0.003592 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.735268 B = 7793.788701 C = 7978.955677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.189 4.189 3 C -0.043 4.043 4 C -0.193 4.193 5 C 0.326 3.674 6 O -0.294 6.294 7 C 0.069 3.931 8 H 0.095 0.905 9 C -0.146 4.146 10 C 0.063 3.937 11 N -0.524 5.524 12 C 0.186 3.814 13 C -0.516 4.516 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.047 3.953 22 N -0.535 5.535 23 C 0.142 3.858 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.034 0.966 34 H -0.006 1.006 35 H 0.262 0.738 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.641 12.004 -3.849 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C -0.068 4.068 4 C -0.213 4.213 5 C 0.147 3.853 6 O -0.200 6.200 7 C 0.012 3.988 8 H 0.113 0.887 9 C -0.184 4.184 10 C -0.065 4.065 11 N -0.249 5.249 12 C 0.060 3.940 13 C -0.555 4.555 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.082 4.082 22 N -0.258 5.258 23 C -0.014 4.014 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.011 0.989 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.458 11.574 -3.865 21.299 hybrid contribution -0.563 -0.659 -0.104 0.872 sum -18.020 10.915 -3.970 21.439 Atomic orbital electron populations 1.20598 0.90203 1.02815 1.02230 1.20724 0.97583 0.94033 1.06811 1.21262 0.92799 0.98273 0.94479 1.21086 0.94711 0.96998 1.08529 1.19936 0.84853 0.89690 0.90867 1.86296 1.14457 1.32790 1.86492 1.23848 0.94961 0.82184 0.97776 0.88720 1.23178 0.99132 1.00309 0.95786 1.22726 0.92521 0.95720 0.95491 1.63812 1.29782 1.21916 1.09427 1.19971 0.94240 0.87563 0.92178 1.21174 1.33884 1.06382 0.94047 0.91798 1.24992 0.96394 0.98067 0.95004 1.69949 1.44544 1.29885 1.09223 0.86550 0.80059 0.80694 0.80069 1.20102 1.21306 1.20228 1.22874 0.89043 0.99861 0.96443 1.67340 1.09451 1.30246 1.18772 1.22335 0.88228 0.97705 0.93168 0.91361 0.91429 0.91636 0.84449 0.84150 0.91205 0.90606 0.90614 0.92796 0.94820 0.98852 0.92797 0.90585 0.92462 0.82663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.03 36.01 0.36 -0.26 16 2 C -0.19 -1.77 5.90 -104.47 -0.62 -2.39 16 3 C -0.04 -0.40 9.85 -39.31 -0.39 -0.79 16 4 C -0.19 -2.24 10.04 -39.27 -0.39 -2.63 16 5 C 0.33 4.80 7.49 -17.12 -0.13 4.67 16 6 O -0.29 -4.85 9.84 -18.72 -0.18 -5.04 16 7 C 0.07 1.22 3.24 -24.91 -0.08 1.14 16 8 H 0.09 1.74 6.95 -51.93 -0.36 1.37 16 9 C -0.15 -2.50 6.80 -24.60 -0.17 -2.67 16 10 C 0.06 1.29 5.39 -2.30 -0.01 1.28 16 11 N -0.52 -11.86 5.31 -232.70 -1.24 -13.10 16 12 C 0.19 4.97 4.59 -4.98 -0.02 4.94 16 13 C -0.52 -14.64 8.35 -34.44 -0.29 -14.93 16 14 H 0.06 1.77 6.66 -52.49 -0.35 1.42 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.05 0.91 6.64 -2.84 -0.02 0.89 16 22 N -0.54 -7.85 8.63 -13.33 -0.12 -7.97 16 23 C 0.14 1.61 10.85 -17.56 -0.19 1.42 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 28 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.53 7.69 -51.93 -0.40 1.13 16 32 H 0.05 1.18 7.55 -51.93 -0.39 0.78 16 33 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 34 H -0.01 -0.18 7.96 -51.93 -0.41 -0.59 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 36 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 37 H 0.06 1.14 7.50 -51.93 -0.39 0.75 16 38 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -31.40 316.17 -8.75 -40.16 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.66 Total: -1.63 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.04 Total: -7.78 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.61 Total: -47.21 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.18 Total: -5.04 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.40 -8.75 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858032017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.165 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds