Wall clock time and date at job start Mon Mar 30 2020 04:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38824 * 120.35442 * 2 1 4 4 C 1.38385 * 118.48587 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.10926 * 0.02562 * 4 3 2 6 6 O 1.35673 * 119.68072 * 180.02562 * 5 4 3 7 7 C 1.42905 * 116.99877 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.62425 * 333.10938 * 7 6 5 9 9 C 1.55140 * 110.70458 * 96.39704 * 7 6 5 10 10 C 1.54901 * 101.65280 * 154.03831 * 9 7 6 11 11 N 1.47846 * 104.79950 * 322.93072 * 10 9 7 12 12 C 1.46892 * 111.00189 * 146.36195 * 11 10 9 13 13 C 1.50697 * 109.47243 * 49.15985 * 12 11 10 14 14 H 1.07998 * 120.00245 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99986 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47220 * 59.99986 * 17 15 13 19 19 H 1.48498 * 109.47029 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47154 * 299.99970 * 17 15 13 21 21 C 1.47446 * 108.56094 * 24.09455 * 11 10 9 22 22 N 1.32250 * 120.63036 * 359.97438 * 5 4 3 23 23 C 1.31967 * 121.64923 * 0.04888 * 22 5 4 24 24 H 1.08999 * 109.46566 * 90.00211 * 1 2 3 25 25 H 1.08997 * 109.46847 * 209.99601 * 1 2 3 26 26 H 1.08994 * 109.46934 * 330.00369 * 1 2 3 27 27 H 1.08003 * 120.75836 * 359.95391 * 3 2 1 28 28 H 1.07997 * 120.44487 * 179.72743 * 4 3 2 29 29 H 1.09006 * 110.99250 * 272.12982 * 9 7 6 30 30 H 1.08994 * 110.99171 * 35.94361 * 9 7 6 31 31 H 1.09004 * 110.37203 * 204.09879 * 10 9 7 32 32 H 1.09007 * 110.37754 * 81.76049 * 10 9 7 33 33 H 1.09007 * 109.46822 * 169.15847 * 12 11 10 34 34 H 1.08996 * 109.47350 * 289.15522 * 12 11 10 35 35 H 0.96997 * 120.00050 * 180.02562 * 16 15 13 36 36 H 1.09007 * 109.88526 * 239.60754 * 21 11 10 37 37 H 1.08997 * 110.02228 * 118.49846 * 21 11 10 38 38 H 1.07994 * 119.58343 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1979 0.0000 4 6 3.5917 1.1528 0.0005 5 6 4.2276 -0.0823 0.0005 6 8 5.5831 -0.1401 0.0016 7 6 6.1770 -1.4399 0.0021 8 1 5.5087 -2.1672 0.4630 9 6 6.5532 -1.8716 -1.4398 10 6 7.7103 -2.8671 -1.1765 11 7 8.4529 -2.2899 -0.0358 12 6 9.0062 -3.3468 0.8212 13 6 9.7314 -4.3563 -0.0309 14 1 9.7763 -4.2260 -1.1021 15 6 10.3375 -5.4463 0.5570 16 7 10.2832 -5.6048 1.8614 17 14 11.2370 -6.6972 -0.4993 18 1 12.3402 -6.0249 -1.2316 19 1 11.7973 -7.7651 0.3671 20 1 10.2891 -7.2957 -1.4732 21 6 7.5402 -1.4166 0.7248 22 7 3.5242 -1.2023 0.0005 23 6 2.2046 -1.1912 -0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6868 2.1436 -0.0007 28 1 4.1690 2.0655 -0.0039 29 1 5.7154 -2.3675 -1.9301 30 1 6.8971 -1.0191 -2.0254 31 1 8.3556 -2.9390 -2.0520 32 1 7.3145 -3.8483 -0.9141 33 1 9.7023 -2.9078 1.5360 34 1 8.1963 -3.8400 1.3588 35 1 10.7099 -6.3715 2.2749 36 1 7.9317 -0.3995 0.7454 37 1 7.4270 -1.7909 1.7422 38 1 1.6636 -2.1259 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858032017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:28 Heat of formation + Delta-G solvation = -20.963697 kcal Electronic energy + Delta-G solvation = -19129.537786 eV Core-core repulsion = 16164.266671 eV Total energy + Delta-G solvation = -2965.271115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.71616 -40.15129 -38.31731 -35.05501 -34.10541 -32.94505 -31.99067 -29.95422 -28.24379 -27.36845 -25.01284 -24.44509 -23.07858 -22.06434 -21.63708 -19.63724 -18.43618 -17.98490 -17.06224 -16.48666 -16.21919 -16.05937 -15.98831 -15.32041 -15.07339 -14.66831 -14.56810 -14.36921 -14.07622 -13.85145 -13.35543 -13.25917 -13.07277 -13.02202 -12.67934 -12.64607 -12.56773 -12.20311 -12.01371 -11.79506 -11.65502 -11.20217 -10.82389 -10.66841 -10.51110 -9.29169 -9.12805 -8.24457 -6.35255 0.17760 0.31770 1.40240 1.44072 1.51863 1.96616 2.39020 2.77180 3.09025 3.20127 3.35733 3.55825 3.71870 3.92276 4.00859 4.04664 4.11317 4.18912 4.35239 4.50089 4.59263 4.65698 4.79994 4.82963 4.89602 4.91008 4.95356 4.97500 5.06821 5.12701 5.22842 5.28382 5.37740 5.60176 5.63041 5.90352 6.17731 6.27819 6.46803 6.80154 6.89945 7.34817 8.87766 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041735 B = 0.003592 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.735268 B = 7793.788701 C = 7978.955677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.175 4.175 3 C -0.039 4.039 4 C -0.194 4.194 5 C 0.286 3.714 6 O -0.305 6.305 7 C 0.085 3.915 8 H 0.082 0.918 9 C -0.128 4.128 10 C 0.063 3.937 11 N -0.532 5.532 12 C 0.202 3.798 13 C -0.534 4.534 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.265 1.265 21 C 0.046 3.954 22 N -0.566 5.566 23 C 0.120 3.880 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.176 0.824 28 H 0.155 0.845 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.005 0.995 34 H -0.034 1.034 35 H 0.266 0.734 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.557 12.923 -5.343 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.177 4.177 3 C -0.064 4.064 4 C -0.214 4.214 5 C 0.108 3.892 6 O -0.212 6.212 7 C 0.027 3.973 8 H 0.100 0.900 9 C -0.166 4.166 10 C -0.064 4.064 11 N -0.257 5.257 12 C 0.075 3.925 13 C -0.572 4.572 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.190 1.190 21 C -0.083 4.083 22 N -0.289 5.289 23 C -0.036 4.036 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.193 0.807 28 H 0.172 0.828 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.023 0.977 34 H -0.017 1.017 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.410 12.514 -5.371 23.710 hybrid contribution -0.145 -0.850 0.404 0.952 sum -19.555 11.664 -4.967 23.305 Atomic orbital electron populations 1.20692 0.87473 1.04140 1.03387 1.21152 0.99439 0.93268 1.03830 1.21741 0.91876 0.99918 0.92870 1.21373 0.95928 0.96276 1.07819 1.20255 0.84043 0.91048 0.93851 1.86235 1.16111 1.31275 1.87554 1.23400 0.93527 0.83039 0.97352 0.89963 1.23042 0.98083 0.99691 0.95803 1.22711 0.93502 0.95690 0.94517 1.63705 1.31653 1.20741 1.09633 1.19615 0.92834 0.88076 0.91942 1.21498 1.34218 1.07069 0.94430 0.91318 1.25969 0.97097 1.00220 0.96332 1.70087 1.45418 1.30737 1.11150 0.85386 0.78855 0.77810 0.78296 1.19171 1.20748 1.19008 1.22839 0.90192 0.99444 0.95809 1.67239 1.11143 1.30885 1.19641 1.22790 0.87422 0.99595 0.93747 0.90099 0.90604 0.89915 0.80666 0.82777 0.89763 0.89511 0.90317 0.94755 0.97686 1.01652 0.92543 0.89489 0.93651 0.80932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.03 71.24 0.71 -0.12 16 2 C -0.17 -2.78 5.90 -19.77 -0.12 -2.90 16 3 C -0.04 -0.60 9.85 22.45 0.22 -0.38 16 4 C -0.19 -4.17 10.04 22.47 0.23 -3.94 16 5 C 0.29 8.34 7.49 84.79 0.63 8.97 16 6 O -0.30 -10.08 9.84 -89.90 -0.88 -10.97 16 7 C 0.08 3.04 3.24 31.77 0.10 3.14 16 8 H 0.08 3.14 6.95 -2.39 -0.02 3.13 16 9 C -0.13 -4.36 6.80 31.98 0.22 -4.14 16 10 C 0.06 2.63 5.39 86.77 0.47 3.09 16 11 N -0.53 -24.88 5.31 -890.12 -4.72 -29.61 16 12 C 0.20 11.32 4.59 85.56 0.39 11.71 16 13 C -0.53 -30.99 8.35 25.60 0.21 -30.78 16 14 H 0.07 3.84 6.66 -2.91 -0.02 3.82 16 15 C 0.00 0.13 5.46 84.66 0.46 0.59 16 16 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 17 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 C 0.05 1.85 6.64 86.64 0.58 2.42 16 22 N -0.57 -16.50 8.63 -308.95 -2.67 -19.17 16 23 C 0.12 2.57 10.85 84.63 0.92 3.49 16 24 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 26 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 27 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 28 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 30 H 0.09 2.78 8.14 -2.39 -0.02 2.77 16 31 H 0.08 3.18 7.69 -2.38 -0.02 3.16 16 32 H 0.03 1.54 7.55 -2.38 -0.02 1.53 16 33 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 34 H -0.03 -2.06 7.96 -2.39 -0.02 -2.08 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.09 3.31 8.06 -2.38 -0.02 3.29 16 37 H 0.05 1.92 7.50 -2.39 -0.02 1.90 16 38 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -69.72 316.17 0.10 -69.62 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.03 Total: 9.30 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.03 Total: -8.86 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -7.11 Total: -105.86 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.88 Total: -10.97 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.72 0.10 -69.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858032017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.657 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds