Wall clock time and date at job start Mon Mar 30 2020 04:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47142 * 2 1 4 4 C 1.53007 * 109.46993 * 119.99383 * 2 1 3 5 5 C 1.50695 * 109.47225 * 184.99916 * 4 2 1 6 6 N 1.34773 * 119.99997 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99882 * 0.02562 * 5 4 2 8 8 N 1.46500 * 109.47294 * 239.99168 * 2 1 3 9 9 C 1.39676 * 119.99636 * 85.00037 * 8 2 1 10 10 C 1.38906 * 120.07135 * 179.97438 * 9 8 2 11 11 C 1.38111 * 119.92343 * 180.02562 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47148 * 90.00263 * 18 16 14 20 20 H 1.48500 * 109.46768 * 209.99956 * 18 16 14 21 21 H 1.48496 * 109.47300 * 329.99708 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 H 1.09005 * 109.47127 * 300.00485 * 1 2 3 25 25 H 1.09000 * 109.46722 * 60.00251 * 1 2 3 26 26 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47138 * 305.00516 * 4 2 1 28 28 H 1.09000 * 109.46878 * 65.00046 * 4 2 1 29 29 H 0.97001 * 120.00244 * 0.02562 * 6 5 4 30 30 H 0.97006 * 120.00247 * 180.02562 * 6 5 4 31 31 H 0.96995 * 120.00066 * 265.00631 * 8 2 1 32 32 H 1.07999 * 120.03932 * 0.04675 * 10 9 8 33 33 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 34 34 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 35 35 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 36 36 H 0.96990 * 120.00273 * 179.97438 * 17 16 14 37 37 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 38 38 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6149 1.3129 6 7 4.2148 -1.1795 2.3350 7 8 4.1449 -0.0204 0.4447 8 7 2.0184 -0.6908 -1.1961 9 6 2.1518 0.0059 -2.3993 10 6 2.6152 -0.6474 -3.5342 11 6 2.7464 0.0446 -4.7222 12 6 2.4226 1.3877 -4.7812 13 6 2.5735 2.1411 -6.0776 14 6 1.2891 2.0550 -6.8611 15 1 0.4476 1.5096 -6.4602 16 6 1.1880 2.6733 -8.0893 17 7 2.2123 3.3387 -8.5769 18 14 -0.4044 2.5671 -9.0601 19 1 -1.2850 3.7050 -8.6927 20 1 -0.1029 2.6237 -10.5131 21 1 -1.0910 1.2883 -8.7465 22 6 1.9556 2.0397 -3.6547 23 6 1.8220 1.3537 -2.4635 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6053 -0.2616 2.1370 28 1 1.7516 -1.7714 1.2058 29 1 3.7324 -1.6546 3.0297 30 1 5.1815 -1.1108 2.3762 31 1 2.2490 -1.6319 -1.1524 32 1 2.8723 -1.6953 -3.4877 33 1 3.1071 -0.4626 -5.6048 34 1 2.8008 3.1860 -5.8662 35 1 3.3844 1.7035 -6.6599 36 1 2.1413 3.7734 -9.4410 37 1 1.6997 3.0878 -3.7053 38 1 1.4618 1.8647 -1.5828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:41 Heat of formation + Delta-G solvation = -27.672883 kcal Electronic energy + Delta-G solvation = -19005.205985 eV Core-core repulsion = 16039.643939 eV Total energy + Delta-G solvation = -2965.562047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.92654 -38.63952 -36.25077 -33.90601 -33.28193 -31.89384 -30.04205 -29.32164 -28.15539 -25.94173 -22.99862 -22.44387 -21.50685 -20.30396 -19.68155 -17.74477 -16.95349 -16.85065 -16.14791 -15.81829 -15.00031 -14.65581 -14.37398 -13.99315 -13.70392 -13.41989 -12.99669 -12.69344 -12.44626 -12.34088 -12.25103 -12.00949 -11.63776 -11.20061 -11.09873 -11.00818 -10.54333 -10.43768 -10.12157 -9.93673 -9.92979 -9.63806 -9.29693 -8.88498 -8.29337 -8.04816 -6.57073 -5.88727 -3.93331 2.30768 2.45795 2.57464 3.24877 3.38187 3.43834 3.48753 3.74125 4.44915 4.52391 4.62895 4.85078 4.91560 5.16361 5.31173 5.38729 5.43130 5.59154 5.69572 5.74649 5.92176 6.16266 6.21281 6.33823 6.50171 6.50857 6.62391 6.88443 7.03402 7.04921 7.45760 7.47192 7.60413 7.74141 8.02429 8.06517 8.06896 8.12359 8.23659 8.51501 9.12749 9.69518 11.19165 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038725 B = 0.003762 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.867656 B = 7441.311524 C = 7771.203209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.084 0.916 4 C -0.151 4.151 5 C 0.508 3.492 6 N -0.864 5.864 7 O -0.517 6.517 8 N -0.742 5.742 9 C 0.196 3.804 10 C -0.196 4.196 11 C -0.080 4.080 12 C -0.088 4.088 13 C 0.054 3.946 14 C -0.505 4.505 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.081 4.081 23 C -0.194 4.194 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.398 0.602 30 H 0.400 0.600 31 H 0.388 0.612 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.113 0.887 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 -10.534 23.960 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.061 3.939 3 H 0.102 0.898 4 C -0.192 4.192 5 C 0.292 3.708 6 N -0.429 5.429 7 O -0.390 6.390 8 N -0.374 5.374 9 C 0.096 3.904 10 C -0.218 4.218 11 C -0.099 4.099 12 C -0.090 4.090 13 C 0.017 3.983 14 C -0.544 4.544 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.100 4.100 23 C -0.216 4.216 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.226 0.774 30 H 0.230 0.770 31 H 0.221 0.779 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.374 -9.853 23.257 25.260 hybrid contribution -0.615 -0.687 -0.080 0.925 sum -0.988 -10.539 23.176 25.479 Atomic orbital electron populations 1.22333 0.95801 1.02234 1.02519 1.20477 0.92835 0.97381 0.83246 0.89758 1.22043 0.92437 1.03710 1.00978 1.20705 0.90558 0.78341 0.81225 1.43955 1.11541 1.59633 1.27723 1.90870 1.70106 1.40578 1.37470 1.44241 1.75148 1.11180 1.06794 1.17494 0.96025 0.91446 0.85398 1.20413 1.09355 0.99148 0.92877 1.20787 0.98719 0.94263 0.96123 1.20403 0.97653 0.94109 0.96811 1.18228 0.97232 0.94735 0.88130 1.21160 0.98421 1.32396 1.02410 0.92578 1.25028 0.96427 0.95474 0.97624 1.69967 1.30092 1.34677 1.18929 0.86575 0.83810 0.78446 0.79091 1.20711 1.21299 1.19879 1.20819 0.97928 0.99372 0.91854 1.20491 1.09798 0.92997 0.98289 0.92237 0.91330 0.92539 0.87805 0.88596 0.77417 0.77009 0.77873 0.87748 0.86821 0.95777 0.95784 0.93040 0.86851 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.43 37.16 0.35 -1.25 16 2 C 0.17 1.80 1.83 -67.92 -0.12 1.68 16 3 H 0.08 1.09 6.30 -51.93 -0.33 0.77 16 4 C -0.15 -1.06 5.24 -27.88 -0.15 -1.20 16 5 C 0.51 4.90 7.96 -10.99 -0.09 4.81 16 6 N -0.86 -4.79 8.87 31.22 0.28 -4.52 16 7 O -0.52 -7.97 16.19 5.56 0.09 -7.88 16 8 N -0.74 -10.03 4.39 -52.16 -0.23 -10.26 16 9 C 0.20 3.47 6.64 -83.79 -0.56 2.92 16 10 C -0.20 -3.67 9.90 -39.38 -0.39 -4.06 16 11 C -0.08 -1.73 9.69 -39.61 -0.38 -2.11 16 12 C -0.09 -2.09 5.07 -104.59 -0.53 -2.62 16 13 C 0.05 1.47 5.10 -29.04 -0.15 1.33 16 14 C -0.51 -14.87 9.09 -34.44 -0.31 -15.18 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 18 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.08 -1.75 9.69 -39.61 -0.38 -2.13 16 23 C -0.19 -3.64 8.85 -39.38 -0.35 -3.99 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.81 7.71 -51.93 -0.40 0.41 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.40 0.84 8.83 -40.82 -0.36 0.48 16 30 H 0.40 2.16 8.93 -40.82 -0.36 1.79 16 31 H 0.39 4.66 8.61 -40.82 -0.35 4.31 16 32 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.02 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.11 1.77 6.12 -52.49 -0.32 1.45 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -35.71 323.01 -7.90 -43.62 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.47 Total: 4.00 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.16 Total: -20.30 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.78 Total: -41.60 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.71 -7.90 -43.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.942 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds