Wall clock time and date at job start Mon Mar 30 2020 04:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47142 * 2 1 4 4 C 1.53007 * 109.46993 * 119.99383 * 2 1 3 5 5 C 1.50695 * 109.47225 * 184.99916 * 4 2 1 6 6 N 1.34773 * 119.99997 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99882 * 0.02562 * 5 4 2 8 8 N 1.46500 * 109.47294 * 239.99168 * 2 1 3 9 9 C 1.39676 * 119.99636 * 85.00037 * 8 2 1 10 10 C 1.38906 * 120.07135 * 179.97438 * 9 8 2 11 11 C 1.38111 * 119.92343 * 180.02562 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47148 * 90.00263 * 18 16 14 20 20 H 1.48500 * 109.46768 * 209.99956 * 18 16 14 21 21 H 1.48496 * 109.47300 * 329.99708 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 H 1.09005 * 109.47127 * 300.00485 * 1 2 3 25 25 H 1.09000 * 109.46722 * 60.00251 * 1 2 3 26 26 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47138 * 305.00516 * 4 2 1 28 28 H 1.09000 * 109.46878 * 65.00046 * 4 2 1 29 29 H 0.97001 * 120.00244 * 0.02562 * 6 5 4 30 30 H 0.97006 * 120.00247 * 180.02562 * 6 5 4 31 31 H 0.96995 * 120.00066 * 265.00631 * 8 2 1 32 32 H 1.07999 * 120.03932 * 0.04675 * 10 9 8 33 33 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 34 34 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 35 35 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 36 36 H 0.96990 * 120.00273 * 179.97438 * 17 16 14 37 37 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 38 38 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6149 1.3129 6 7 4.2148 -1.1795 2.3350 7 8 4.1449 -0.0204 0.4447 8 7 2.0184 -0.6908 -1.1961 9 6 2.1518 0.0059 -2.3993 10 6 2.6152 -0.6474 -3.5342 11 6 2.7464 0.0446 -4.7222 12 6 2.4226 1.3877 -4.7812 13 6 2.5735 2.1411 -6.0776 14 6 1.2891 2.0550 -6.8611 15 1 0.4476 1.5096 -6.4602 16 6 1.1880 2.6733 -8.0893 17 7 2.2123 3.3387 -8.5769 18 14 -0.4044 2.5671 -9.0601 19 1 -1.2850 3.7050 -8.6927 20 1 -0.1029 2.6237 -10.5131 21 1 -1.0910 1.2883 -8.7465 22 6 1.9556 2.0397 -3.6547 23 6 1.8220 1.3537 -2.4635 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6053 -0.2616 2.1370 28 1 1.7516 -1.7714 1.2058 29 1 3.7324 -1.6546 3.0297 30 1 5.1815 -1.1108 2.3762 31 1 2.2490 -1.6319 -1.1524 32 1 2.8723 -1.6953 -3.4877 33 1 3.1071 -0.4626 -5.6048 34 1 2.8008 3.1860 -5.8662 35 1 3.3844 1.7035 -6.6599 36 1 2.1413 3.7734 -9.4410 37 1 1.6997 3.0878 -3.7053 38 1 1.4618 1.8647 -1.5828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:41 Heat of formation + Delta-G solvation = -54.086674 kcal Electronic energy + Delta-G solvation = -19006.351373 eV Core-core repulsion = 16039.643939 eV Total energy + Delta-G solvation = -2966.707435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81995 -40.00138 -37.44396 -35.26590 -34.57299 -33.41513 -31.62758 -30.96800 -28.83469 -27.78231 -24.84739 -23.87352 -22.58558 -21.58409 -20.85112 -18.57601 -18.44145 -18.00734 -17.54132 -16.85949 -16.71057 -15.89611 -15.75429 -15.17934 -15.02605 -14.63738 -14.45072 -14.25376 -14.01693 -13.56274 -13.47016 -13.17668 -12.90648 -12.83827 -12.70698 -12.49851 -12.33711 -11.94339 -11.60512 -11.52613 -11.31511 -10.93450 -10.58019 -10.57610 -10.48405 -9.65048 -8.27173 -7.88274 -6.29563 0.70409 0.95241 1.39656 1.41898 1.53599 1.77596 2.42505 2.65311 2.70717 3.13199 3.20383 3.76100 4.05209 4.13683 4.24896 4.35192 4.51662 4.55616 4.67071 4.72996 4.78529 4.80665 4.93187 5.03583 5.17858 5.22427 5.38570 5.42651 5.44319 5.59370 5.72127 5.83016 5.97730 6.08167 6.25193 6.26918 6.57418 6.66230 6.83567 7.04520 7.38561 7.48529 8.93392 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038725 B = 0.003762 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.867656 B = 7441.311524 C = 7771.203209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.158 3.842 3 H 0.060 0.940 4 C -0.140 4.140 5 C 0.502 3.498 6 N -0.843 5.843 7 O -0.586 6.586 8 N -0.729 5.729 9 C 0.212 3.788 10 C -0.198 4.198 11 C -0.090 4.090 12 C -0.128 4.128 13 C 0.065 3.935 14 C -0.525 4.525 15 H 0.053 0.947 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.091 4.091 23 C -0.195 4.195 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.141 0.859 28 H 0.127 0.873 29 H 0.418 0.582 30 H 0.402 0.598 31 H 0.399 0.601 32 H 0.134 0.866 33 H 0.109 0.891 34 H -0.005 1.005 35 H -0.004 1.004 36 H 0.265 0.735 37 H 0.107 0.893 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -12.682 26.863 29.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 H 0.078 0.922 4 C -0.180 4.180 5 C 0.288 3.712 6 N -0.408 5.408 7 O -0.465 6.465 8 N -0.359 5.359 9 C 0.109 3.891 10 C -0.220 4.220 11 C -0.109 4.109 12 C -0.130 4.130 13 C 0.028 3.972 14 C -0.563 4.563 15 H 0.071 0.929 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.793 3.207 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.110 4.110 23 C -0.217 4.217 24 H 0.105 0.895 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.159 0.841 28 H 0.145 0.855 29 H 0.249 0.751 30 H 0.232 0.768 31 H 0.234 0.766 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.013 0.987 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.303 -12.061 26.269 28.998 hybrid contribution 0.040 -0.089 -0.759 0.765 sum -2.263 -12.150 25.510 28.347 Atomic orbital electron populations 1.22258 0.94245 1.03167 1.02514 1.20710 0.93875 0.96554 0.83639 0.92178 1.22034 0.90390 1.05389 1.00152 1.21211 0.91722 0.77403 0.80865 1.43807 1.11809 1.58124 1.27015 1.90857 1.71525 1.43868 1.40244 1.44386 1.73686 1.11653 1.06171 1.17612 0.93593 0.91178 0.86748 1.20631 1.08930 1.00425 0.92026 1.20804 0.99073 0.93569 0.97404 1.20105 1.01871 0.95226 0.95816 1.17959 0.95828 0.93357 0.90052 1.21453 0.98956 1.32690 1.03222 0.92880 1.26006 1.00407 0.94724 0.98669 1.70103 1.32471 1.35339 1.19520 0.85393 0.78948 0.78936 0.77449 1.19591 1.20367 1.18968 1.20816 0.98348 0.99344 0.92454 1.20642 1.09587 0.93686 0.97821 0.89480 0.94184 0.91085 0.84147 0.85509 0.75055 0.76811 0.76593 0.84773 0.87274 0.98675 0.98596 0.92652 0.87486 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.43 71.98 0.68 -1.80 16 2 C 0.16 2.92 1.83 45.00 0.08 3.00 16 3 H 0.06 1.45 6.30 -2.39 -0.02 1.43 16 4 C -0.14 -1.32 5.24 29.85 0.16 -1.16 16 5 C 0.50 8.25 7.96 87.66 0.70 8.95 16 6 N -0.84 -6.61 8.87 -173.54 -1.54 -8.15 16 7 O -0.59 -17.45 16.19 -3.02 -0.05 -17.50 16 8 N -0.73 -17.84 4.39 -318.95 -1.40 -19.24 16 9 C 0.21 7.28 6.64 38.21 0.25 7.53 16 10 C -0.20 -7.29 9.90 22.40 0.22 -7.07 16 11 C -0.09 -4.01 9.69 22.25 0.22 -3.79 16 12 C -0.13 -6.44 5.07 -19.84 -0.10 -6.54 16 13 C 0.06 3.84 5.10 29.10 0.15 3.99 16 14 C -0.53 -32.25 9.09 25.60 0.23 -32.02 16 15 H 0.05 3.21 7.74 -2.91 -0.02 3.19 16 16 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 17 N -0.93 -59.39 13.29 21.45 0.28 -59.10 16 18 Si 0.97 46.48 29.54 68.60 2.03 48.51 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C -0.09 -4.10 9.69 22.25 0.22 -3.88 16 23 C -0.19 -7.34 8.85 22.40 0.20 -7.14 16 24 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.04 0.85 7.71 -2.39 -0.02 0.83 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.42 -0.04 8.83 -92.71 -0.82 -0.86 16 30 H 0.40 3.37 8.93 -92.70 -0.83 2.54 16 31 H 0.40 8.21 8.61 -92.71 -0.80 7.41 16 32 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 34 H -0.01 -0.32 8.09 -2.39 -0.02 -0.34 16 35 H 0.00 -0.27 8.08 -2.39 -0.02 -0.29 16 36 H 0.26 15.68 8.31 -92.72 -0.77 14.91 16 37 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 38 H 0.13 4.21 6.12 -2.91 -0.02 4.20 16 Total: -1.00 -82.71 323.01 1.43 -81.28 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -1.36 Total: 13.70 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 3.46 Total: -39.51 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.66 Total: -86.49 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.05 Total: -17.50 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -82.71 1.43 -81.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.194 kcal (2) G-P(sol) polarization free energy of solvation -82.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds