Wall clock time and date at job start Mon Mar 30 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86804 * 119.99616 * 2 1 4 4 H 1.48507 * 109.46556 * 240.00152 * 3 2 1 5 5 H 1.48497 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47211 * 120.00420 * 3 2 1 7 7 C 1.39925 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00159 * 167.42029 * 7 2 1 9 9 C 1.41404 * 120.00175 * 347.42416 * 7 2 1 10 10 C 1.40764 * 120.21249 * 329.29714 * 9 7 2 11 11 C 1.37638 * 119.87846 * 179.97438 * 10 9 7 12 12 C 1.38542 * 120.31560 * 0.02562 * 11 10 9 13 13 C 1.39198 * 120.43237 * 359.97438 * 12 11 10 14 14 N 1.40213 * 119.94304 * 179.71991 * 13 12 11 15 15 C 1.37837 * 125.84809 * 292.83521 * 14 13 12 16 16 S 1.76195 * 125.69601 * 359.97438 * 15 14 13 17 17 N 1.30185 * 108.60967 * 179.81398 * 15 14 13 18 18 N 1.40163 * 108.04802 * 0.43117 * 17 15 14 19 19 H 0.97003 * 126.27494 * 179.74207 * 18 17 15 20 20 C 1.34799 * 125.84551 * 113.12901 * 14 13 12 21 21 O 1.21818 * 126.20457 * 0.03371 * 20 14 13 22 22 C 1.38240 * 120.11743 * 0.02562 * 13 12 11 23 23 H 0.97006 * 120.00392 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.06478 * 359.95409 * 10 9 7 25 25 H 1.08007 * 119.84113 * 180.02562 * 11 10 9 26 26 H 1.08001 * 119.78280 * 180.02562 * 12 11 10 27 27 H 1.41005 * 100.00291 * 180.02562 * 16 15 14 28 28 H 1.07997 * 120.15870 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0686 -1.2231 -0.2032 9 6 1.3264 -2.4216 0.2677 10 6 0.2072 -2.4305 1.1213 11 6 -0.4514 -3.6119 1.3762 12 6 -0.0177 -4.7933 0.7969 13 6 1.0876 -4.7996 -0.0492 14 7 1.5212 -6.0021 -0.6253 15 6 2.0681 -7.0707 0.0522 16 16 2.3408 -7.1549 1.7909 17 7 2.3463 -8.0086 -0.8066 18 7 1.9862 -7.5508 -2.0815 19 1 2.0833 -8.0379 -2.9148 20 6 1.4797 -6.3089 -1.9372 21 8 1.0613 -5.5941 -2.8305 22 6 1.7623 -3.6232 -0.3175 23 1 -0.4851 0.8401 0.0004 24 1 -0.1341 -1.5120 1.5758 25 1 -1.3104 -3.6180 2.0310 26 1 -0.5411 -5.7154 1.0026 27 1 2.9032 -8.4442 1.8884 28 1 2.6202 -3.6274 -0.9736 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313490166.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:25 Heat of formation + Delta-G solvation = 69.062538 kcal Electronic energy + Delta-G solvation = -16923.759215 eV Core-core repulsion = 14068.052702 eV Total energy + Delta-G solvation = -2855.706513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 263.047 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19313 -37.77416 -36.91004 -34.62908 -33.14093 -30.54126 -30.02767 -28.45805 -25.44133 -23.42494 -22.88491 -20.96450 -20.53454 -18.96250 -17.43658 -16.85434 -16.30153 -15.75548 -15.46641 -15.11460 -14.78808 -14.46557 -13.60141 -13.15783 -12.67789 -12.47105 -12.11165 -11.84969 -11.40555 -11.20546 -11.17295 -10.88572 -10.69255 -10.54433 -10.12702 -10.04874 -9.68730 -9.29494 -8.93184 -7.95460 -7.65525 -7.47530 -6.81024 -4.48741 0.87963 1.74659 1.94202 2.44621 2.49990 2.70733 3.04967 3.05831 3.08677 3.13487 3.89412 3.95007 4.48894 5.00668 5.44009 5.88714 6.10151 6.19460 6.39921 6.74522 6.81350 6.85631 6.97986 7.13419 7.40246 7.53760 7.64754 7.79259 7.89024 8.07049 8.41313 8.49070 8.75494 8.78648 10.15805 Molecular weight = 263.05amu Principal moments of inertia in cm(-1) A = 0.027044 B = 0.005859 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.103160 B = 4777.607531 C = 5120.395308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.140 4.140 11 C -0.096 4.096 12 C -0.214 4.214 13 C 0.132 3.868 14 N -0.469 5.469 15 C 0.285 3.715 16 S 0.043 5.957 17 N -0.305 5.305 18 N -0.549 5.549 19 H 0.452 0.548 20 C 0.653 3.347 21 O -0.537 6.537 22 C -0.187 4.187 23 H 0.283 0.717 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -9.624 4.108 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.160 4.160 11 C -0.115 4.115 12 C -0.235 4.235 13 C 0.044 3.956 14 N -0.193 5.193 15 C -0.102 4.102 16 S 0.193 5.807 17 N -0.138 5.138 18 N -0.302 5.302 19 H 0.300 0.700 20 C 0.350 3.650 21 O -0.408 6.408 22 C -0.208 4.208 23 H 0.094 0.906 24 H 0.140 0.860 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.042 -9.620 4.243 10.945 hybrid contribution 0.308 0.236 -1.558 1.605 sum 3.350 -9.384 2.686 10.320 Atomic orbital electron populations 1.69768 1.07476 1.29540 1.35484 1.25870 0.94832 1.01270 0.92212 0.86287 0.80015 0.79980 0.79996 1.19003 1.20293 1.18742 1.19496 0.96505 0.90378 1.42781 0.90234 1.17417 0.91344 0.91243 0.88386 1.21440 0.98478 0.96666 0.99404 1.20548 0.98891 0.92437 0.99634 1.20257 0.99106 0.97955 1.06150 1.17152 0.97443 0.81149 0.99832 1.43201 1.54874 1.14760 1.06455 1.25306 0.97777 0.87665 0.99415 1.87624 1.78526 1.24105 0.90412 1.77387 1.26923 1.20631 0.88813 1.46473 1.60985 1.15570 1.07132 0.69951 1.16792 0.81909 0.83072 0.83235 1.91139 1.53062 1.54291 1.42303 1.20979 1.03086 0.91928 1.04799 0.90630 0.86043 0.88082 0.88488 0.92734 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.12 11.08 55.55 0.62 -19.51 15 2 C 0.08 1.86 5.20 -17.35 -0.09 1.77 15 3 Si 0.91 18.31 29.58 -169.99 -5.03 13.28 15 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 5 H -0.28 -5.44 7.11 56.52 0.40 -5.03 15 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 7 C -0.46 -11.92 9.04 -37.75 -0.34 -12.26 15 8 H 0.08 1.97 7.88 -52.48 -0.41 1.56 15 9 C 0.12 3.07 5.51 -106.85 -0.59 2.48 15 10 C -0.14 -3.42 8.64 -38.85 -0.34 -3.75 15 11 C -0.10 -2.08 10.02 -39.69 -0.40 -2.47 15 12 C -0.21 -4.54 9.86 -39.11 -0.39 -4.92 15 13 C 0.13 2.96 5.23 -83.66 -0.44 2.53 15 14 N -0.47 -9.47 2.77 -64.97 -0.18 -9.65 15 15 C 0.29 4.74 8.23 -88.02 -0.72 4.02 15 16 S 0.04 0.55 25.79 -107.50 -2.77 -2.22 15 17 N -0.31 -4.82 12.68 30.75 0.39 -4.43 15 18 N -0.55 -8.85 7.39 27.70 0.20 -8.64 15 19 H 0.45 5.60 8.96 -182.55 -1.64 3.96 15 20 C 0.65 13.48 8.91 -86.79 -0.77 12.70 15 21 O -0.54 -13.04 17.88 5.08 0.09 -12.95 15 22 C -0.19 -4.61 9.65 -38.70 -0.37 -4.98 15 23 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 24 H 0.12 3.02 6.44 -52.48 -0.34 2.68 15 25 H 0.10 1.89 8.06 -52.48 -0.42 1.47 15 26 H 0.10 1.86 8.06 -52.49 -0.42 1.43 15 27 H 0.11 0.99 9.55 96.90 0.93 1.92 15 28 H 0.10 2.44 8.06 -52.49 -0.42 2.02 15 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -29.54 274.09 -8.86 -38.40 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -1.86 Total: 6.48 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -4.45 Total: -4.89 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 1.03 Total: -42.22 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.77 Total: -2.22 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.54 -8.86 -38.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313490166.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.461 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds