Wall clock time and date at job start Mon Mar 30 2020 06:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86804 * 119.99616 * 2 1 4 4 H 1.48507 * 109.46556 * 240.00152 * 3 2 1 5 5 H 1.48497 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47211 * 120.00420 * 3 2 1 7 7 C 1.39925 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00159 * 167.42029 * 7 2 1 9 9 C 1.41404 * 120.00175 * 347.42416 * 7 2 1 10 10 C 1.40764 * 120.21249 * 329.29714 * 9 7 2 11 11 C 1.37638 * 119.87846 * 179.97438 * 10 9 7 12 12 C 1.38542 * 120.31560 * 0.02562 * 11 10 9 13 13 C 1.39198 * 120.43237 * 359.97438 * 12 11 10 14 14 N 1.40213 * 119.94304 * 179.71991 * 13 12 11 15 15 C 1.37837 * 125.84809 * 292.83521 * 14 13 12 16 16 S 1.76195 * 125.69601 * 359.97438 * 15 14 13 17 17 N 1.30185 * 108.60967 * 179.81398 * 15 14 13 18 18 N 1.40163 * 108.04802 * 0.43117 * 17 15 14 19 19 H 0.97003 * 126.27494 * 179.74207 * 18 17 15 20 20 C 1.34799 * 125.84551 * 113.12901 * 14 13 12 21 21 O 1.21818 * 126.20457 * 0.03371 * 20 14 13 22 22 C 1.38240 * 120.11743 * 0.02562 * 13 12 11 23 23 H 0.97006 * 120.00392 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.06478 * 359.95409 * 10 9 7 25 25 H 1.08007 * 119.84113 * 180.02562 * 11 10 9 26 26 H 1.08001 * 119.78280 * 180.02562 * 12 11 10 27 27 H 1.41005 * 100.00291 * 180.02562 * 16 15 14 28 28 H 1.07997 * 120.15870 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0686 -1.2231 -0.2032 9 6 1.3264 -2.4216 0.2677 10 6 0.2072 -2.4305 1.1213 11 6 -0.4514 -3.6119 1.3762 12 6 -0.0177 -4.7933 0.7969 13 6 1.0876 -4.7996 -0.0492 14 7 1.5212 -6.0021 -0.6253 15 6 2.0681 -7.0707 0.0522 16 16 2.3408 -7.1549 1.7909 17 7 2.3463 -8.0086 -0.8066 18 7 1.9862 -7.5508 -2.0815 19 1 2.0833 -8.0379 -2.9148 20 6 1.4797 -6.3089 -1.9372 21 8 1.0613 -5.5941 -2.8305 22 6 1.7623 -3.6232 -0.3175 23 1 -0.4851 0.8401 0.0004 24 1 -0.1341 -1.5120 1.5758 25 1 -1.3104 -3.6180 2.0310 26 1 -0.5411 -5.7154 1.0026 27 1 2.9032 -8.4442 1.8884 28 1 2.6202 -3.6274 -0.9736 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313490166.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:24 Heat of formation + Delta-G solvation = 50.960893 kcal Electronic energy + Delta-G solvation = -16924.544162 eV Core-core repulsion = 14068.052702 eV Total energy + Delta-G solvation = -2856.491459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 263.047 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.67914 -39.54085 -38.55715 -36.30446 -34.86190 -31.98945 -31.85581 -30.18038 -27.30045 -24.85281 -24.47811 -22.74284 -22.16427 -20.51500 -19.05660 -18.13527 -17.84661 -17.49499 -17.06476 -16.73348 -16.53724 -15.76393 -15.37495 -14.85102 -14.21151 -14.18880 -13.67549 -13.57321 -13.13005 -12.82762 -12.65821 -12.35124 -12.19855 -12.09165 -11.86594 -11.73230 -11.40614 -11.07686 -10.45705 -9.49159 -9.29251 -9.10417 -8.63194 -6.41611 -0.26240 0.38675 0.68074 0.75197 0.91296 1.38449 1.41418 1.43962 1.51977 1.53770 2.23435 2.51541 2.68199 3.47248 3.68278 4.33154 4.39515 4.50832 4.74840 4.92797 5.00735 5.17328 5.29355 5.45800 5.69131 5.77173 5.95285 6.02275 6.17474 6.30451 6.58756 6.84212 6.90366 6.93559 8.35825 Molecular weight = 263.05amu Principal moments of inertia in cm(-1) A = 0.027044 B = 0.005859 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.103160 B = 4777.607531 C = 5120.395308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.038 3.962 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.501 4.501 8 H 0.074 0.926 9 C 0.094 3.906 10 C -0.158 4.158 11 C -0.089 4.089 12 C -0.202 4.202 13 C 0.138 3.862 14 N -0.480 5.480 15 C 0.278 3.722 16 S 0.050 5.950 17 N -0.291 5.291 18 N -0.527 5.527 19 H 0.468 0.532 20 C 0.641 3.359 21 O -0.584 6.584 22 C -0.211 4.211 23 H 0.290 0.710 24 H 0.111 0.889 25 H 0.136 0.864 26 H 0.126 0.874 27 H 0.151 0.849 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -10.929 5.371 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.530 4.530 8 H 0.092 0.908 9 C 0.091 3.909 10 C -0.177 4.177 11 C -0.108 4.108 12 C -0.223 4.223 13 C 0.049 3.951 14 N -0.204 5.204 15 C -0.107 4.107 16 S 0.199 5.801 17 N -0.122 5.122 18 N -0.281 5.281 19 H 0.320 0.680 20 C 0.338 3.662 21 O -0.459 6.459 22 C -0.232 4.232 23 H 0.101 0.899 24 H 0.129 0.871 25 H 0.154 0.846 26 H 0.144 0.856 27 H 0.114 0.886 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.109 -11.001 5.520 12.694 hybrid contribution 0.312 0.397 -1.876 1.943 sum 3.421 -10.604 3.643 11.722 Atomic orbital electron populations 1.69813 1.08742 1.30790 1.36103 1.26667 0.95601 1.04222 0.91195 0.85234 0.78733 0.75670 0.79967 1.19169 1.19067 1.17897 1.19738 0.96611 0.91712 1.44974 0.90809 1.17716 0.92314 0.91736 0.89127 1.21435 0.98846 0.97452 0.99986 1.20902 0.99165 0.91454 0.99251 1.20576 0.98110 0.98940 1.04638 1.17160 0.97204 0.81405 0.99322 1.43130 1.55466 1.14958 1.06828 1.25910 0.97276 0.86314 1.01217 1.87664 1.78275 1.27137 0.86981 1.77429 1.26574 1.19995 0.88242 1.46398 1.59413 1.14062 1.08191 0.67989 1.16979 0.82235 0.83964 0.83013 1.91093 1.55248 1.55886 1.43694 1.20950 1.03574 0.93038 1.05630 0.89934 0.87091 0.84580 0.85599 0.88552 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.62 11.08 21.82 0.24 -42.38 15 2 C 0.04 1.89 5.20 85.25 0.44 2.33 15 3 Si 0.98 37.94 29.58 68.60 2.03 39.96 15 4 H -0.27 -10.27 7.11 99.48 0.71 -9.57 15 5 H -0.27 -9.68 7.11 99.48 0.71 -8.97 15 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 15 7 C -0.50 -26.88 9.04 23.46 0.21 -26.67 15 8 H 0.07 3.86 7.88 -2.91 -0.02 3.84 15 9 C 0.09 5.01 5.51 -21.31 -0.12 4.89 15 10 C -0.16 -7.77 8.64 22.75 0.20 -7.57 15 11 C -0.09 -3.72 10.02 22.20 0.22 -3.50 15 12 C -0.20 -8.21 9.86 22.57 0.22 -7.99 15 13 C 0.14 6.14 5.23 38.03 0.20 6.34 15 14 N -0.48 -18.99 2.77 -477.61 -1.32 -20.31 15 15 C 0.28 8.63 8.23 179.44 1.48 10.11 15 16 S 0.05 1.12 25.79 -56.49 -1.46 -0.34 15 17 N -0.29 -8.42 12.68 -56.62 -0.72 -9.14 15 18 N -0.53 -16.19 7.39 -184.38 -1.36 -17.55 15 19 H 0.47 10.83 8.96 -213.28 -1.91 8.91 15 20 C 0.64 26.31 8.91 179.01 1.59 27.91 15 21 O -0.58 -28.96 17.88 -4.73 -0.08 -29.04 15 22 C -0.21 -10.74 9.65 22.84 0.22 -10.52 15 23 H 0.29 13.50 8.30 -92.70 -0.77 12.73 15 24 H 0.11 5.63 6.44 -2.91 -0.02 5.61 15 25 H 0.14 4.68 8.06 -2.91 -0.02 4.66 15 26 H 0.13 4.39 8.06 -2.91 -0.02 4.36 15 27 H 0.15 2.05 9.55 73.80 0.70 2.76 15 28 H 0.08 4.29 8.06 -2.91 -0.02 4.26 15 Total: -1.00 -65.62 274.09 2.03 -63.59 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.03 Total: 19.89 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 4.67 Total: -4.68 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -3.16 Total: -89.38 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.08 Total: -29.04 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.96 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -1.46 Total: -0.34 kcal Total: -65.62 2.03 -63.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313490166.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.551 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds