Wall clock time and date at job start Mon Mar 30 2020 04:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99879 * 2 1 4 4 C 1.52997 * 109.47087 * 184.63156 * 3 2 1 5 5 N 1.46500 * 115.56302 * 32.19721 * 4 3 2 6 6 C 1.39845 * 120.00194 * 81.19167 * 5 4 3 7 7 C 1.39601 * 119.83816 * 355.77461 * 6 5 4 8 8 C 1.38066 * 120.54621 * 179.71487 * 7 6 5 9 9 C 1.38737 * 120.22105 * 0.55217 * 8 7 6 10 10 N 1.38861 * 120.16139 * 179.74495 * 9 8 7 11 11 C 1.41562 * 119.67190 * 359.72233 * 9 8 7 12 12 C 1.41032 * 120.26538 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99705 * 330.83204 * 12 11 9 14 14 C 1.39883 * 119.99970 * 150.83587 * 12 11 9 15 15 N 1.30894 * 120.00203 * 161.48645 * 14 12 11 16 16 Si 1.86803 * 119.99789 * 341.48743 * 14 12 11 17 17 H 1.48508 * 109.46936 * 95.04225 * 16 14 12 18 18 H 1.48501 * 109.47061 * 215.03811 * 16 14 12 19 19 H 1.48492 * 109.47415 * 335.03982 * 16 14 12 20 20 C 1.38007 * 119.84222 * 176.03909 * 6 5 4 21 21 C 1.53006 * 117.49955 * 177.88568 * 4 3 2 22 22 C 1.52997 * 60.03175 * 107.50204 * 21 4 3 23 23 H 1.09002 * 109.47000 * 299.99665 * 1 2 3 24 24 H 1.08999 * 109.47283 * 59.99211 * 1 2 3 25 25 H 1.08994 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47106 * 64.63389 * 3 2 1 27 27 H 1.08998 * 109.47461 * 304.63484 * 3 2 1 28 28 H 0.97006 * 119.99525 * 261.20049 * 5 4 3 29 29 H 1.07995 * 119.72658 * 359.97438 * 7 6 5 30 30 H 1.08003 * 119.88695 * 180.27038 * 8 7 6 31 31 H 0.96997 * 120.00025 * 185.22145 * 10 9 8 32 32 H 0.97001 * 120.00055 * 5.21731 * 10 9 8 33 33 H 0.96994 * 120.00422 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.11475 * 0.02770 * 20 6 5 35 35 H 1.09001 * 117.49870 * 359.97438 * 21 4 3 36 36 H 1.09002 * 117.49677 * 215.00688 * 21 4 3 37 37 H 1.09002 * 117.49728 * 107.48396 * 22 21 4 38 38 H 1.09001 * 117.49591 * 252.47179 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5311 1.1866 -0.1165 5 7 4.0182 0.0462 -0.8966 6 6 4.0521 0.1175 -2.2928 7 6 3.5393 1.2411 -2.9436 8 6 3.5706 1.3294 -4.3211 9 6 4.1034 0.2939 -5.0753 10 7 4.1294 0.3817 -6.4608 11 6 4.6207 -0.8523 -4.4252 12 6 5.1647 -1.9124 -5.1796 13 1 4.8005 -2.1076 -6.1775 14 6 6.1759 -2.7112 -4.6355 15 7 6.4307 -3.8867 -5.1519 16 14 7.1627 -2.1003 -3.1717 17 1 6.5639 -2.6241 -1.9177 18 1 8.5649 -2.5756 -3.2869 19 1 7.1438 -0.6157 -3.1468 20 6 4.5872 -0.9256 -3.0209 21 6 4.3381 2.4848 -0.1837 22 6 4.3692 1.6304 1.0851 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.7558 1.8165 0.9287 27 1 1.6245 1.8750 -0.8455 28 1 4.3170 -0.7584 -0.4446 29 1 3.1184 2.0497 -2.3646 30 1 3.1749 2.2055 -4.8133 31 1 4.4320 -0.3734 -6.9891 32 1 3.8449 1.1982 -6.9005 33 1 7.1322 -4.4404 -4.7748 34 1 4.9787 -1.7953 -2.5143 35 1 3.7855 3.4235 -0.1453 36 1 5.2312 2.4904 -0.8087 37 1 5.2826 1.0737 1.2948 38 1 3.8374 2.0072 1.9588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697493527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:38 Heat of formation + Delta-G solvation = -11.381073 kcal Electronic energy + Delta-G solvation = -19941.617018 eV Core-core repulsion = 16976.761437 eV Total energy + Delta-G solvation = -2964.855581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41338 -39.20007 -37.75848 -35.52159 -35.23387 -32.50675 -32.04039 -29.08514 -27.90246 -26.62493 -26.31717 -23.71290 -22.99445 -22.03527 -20.63802 -18.98907 -18.03759 -17.73978 -17.32806 -16.81850 -16.66837 -16.56682 -16.19529 -15.61208 -14.96306 -14.87552 -14.49737 -14.06772 -13.94513 -13.63166 -13.26856 -13.16605 -13.03652 -12.57345 -12.45121 -12.35788 -12.25217 -12.10414 -11.72606 -11.36972 -11.16686 -11.00693 -10.87432 -10.37357 -9.47674 -9.34583 -8.77976 -7.48193 -6.12611 0.94651 1.21947 1.28630 1.52553 1.56226 2.19889 2.56217 2.76970 2.81666 3.00165 3.70015 3.74142 3.91880 4.03053 4.15826 4.38707 4.42646 4.52084 4.54093 4.68241 4.71905 4.76780 4.85755 4.86767 4.95525 5.03363 5.14324 5.26761 5.39393 5.51656 5.71294 5.83699 6.02682 6.21807 6.34051 6.37627 6.69290 6.92884 7.00465 7.14998 7.33690 7.60435 8.30984 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.006895 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.576354 B = 4060.001365 C = 4465.242505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.092 3.908 4 C 0.090 3.910 5 N -0.720 5.720 6 C 0.203 3.797 7 C -0.235 4.235 8 C -0.144 4.144 9 C 0.081 3.919 10 N -0.878 5.878 11 C 0.050 3.950 12 C -0.473 4.473 13 H 0.062 0.938 14 C 0.047 3.953 15 N -0.864 5.864 16 Si 0.970 3.030 17 H -0.271 1.271 18 H -0.289 1.289 19 H -0.260 1.260 20 C -0.286 4.286 21 C -0.164 4.164 22 C -0.156 4.156 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.390 0.610 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.389 0.611 32 H 0.394 0.606 33 H 0.286 0.714 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 12.576 11.791 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C 0.014 3.986 4 C 0.001 3.999 5 N -0.350 5.350 6 C 0.102 3.898 7 C -0.259 4.259 8 C -0.168 4.168 9 C -0.021 4.021 10 N -0.422 5.422 11 C 0.045 3.955 12 C -0.505 4.505 13 H 0.080 0.920 14 C -0.165 4.165 15 N -0.492 5.492 16 Si 0.797 3.203 17 H -0.198 1.198 18 H -0.217 1.217 19 H -0.185 1.185 20 C -0.310 4.310 21 C -0.202 4.202 22 C -0.194 4.194 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.223 0.777 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.217 0.783 32 H 0.222 0.778 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.776 12.312 11.845 18.380 hybrid contribution 0.515 -0.662 -0.162 0.855 sum -6.261 11.650 11.683 17.647 Atomic orbital electron populations 1.22854 0.80136 1.03216 1.00615 1.87928 1.20727 1.28370 1.95454 1.22415 0.90728 0.84718 1.00780 1.20552 0.90540 0.89826 0.98985 1.43593 1.73236 1.16555 1.01648 1.17382 0.95399 0.94034 0.82997 1.20017 1.13248 0.99186 0.93452 1.20205 1.04743 0.98253 0.93617 1.17923 1.04330 0.94773 0.85096 1.41755 1.78516 1.19035 1.02877 1.17292 0.94604 0.92035 0.91571 1.19083 1.18417 1.10875 1.02092 0.92031 1.26602 0.97604 0.93124 0.99123 1.69771 1.29116 1.08783 1.41566 0.85405 0.76125 0.80258 0.78529 1.19778 1.21659 1.18452 1.20265 1.16630 1.00423 0.93688 1.23347 1.01887 0.94636 1.00339 1.23491 1.01494 1.02043 0.92362 0.92185 0.94178 0.89626 0.90221 0.93195 0.77693 0.86327 0.86118 0.78289 0.77817 0.90378 0.89729 0.85806 0.89897 0.88966 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -12.14 10.28 -148.98 -1.53 -13.67 16 3 C 0.09 2.27 5.99 71.98 0.43 2.70 16 4 C 0.09 2.49 1.64 3.63 0.01 2.49 16 5 N -0.72 -26.43 5.15 -299.31 -1.54 -27.98 16 6 C 0.20 8.88 6.58 38.14 0.25 9.13 16 7 C -0.24 -9.50 8.93 22.56 0.20 -9.30 16 8 C -0.14 -5.92 9.87 22.35 0.22 -5.70 16 9 C 0.08 3.79 6.79 38.97 0.26 4.06 16 10 N -0.88 -35.12 8.97 -50.31 -0.45 -35.58 16 11 C 0.05 2.67 5.13 -21.18 -0.11 2.57 16 12 C -0.47 -27.12 8.97 23.35 0.21 -26.91 16 13 H 0.06 3.68 6.92 -2.91 -0.02 3.66 16 14 C 0.05 2.67 5.40 85.23 0.46 3.13 16 15 N -0.86 -49.69 13.93 21.82 0.30 -49.39 16 16 Si 0.97 46.95 24.51 68.60 1.68 48.64 16 17 H -0.27 -12.72 6.68 99.48 0.66 -12.05 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.26 -13.01 6.88 99.48 0.68 -12.33 16 20 C -0.29 -14.46 7.00 22.81 0.16 -14.30 16 21 C -0.16 -3.81 8.76 30.60 0.27 -3.55 16 22 C -0.16 -3.27 10.11 30.62 0.31 -2.96 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.44 7.89 -2.38 -0.02 1.42 16 27 H 0.05 1.25 7.33 -2.39 -0.02 1.24 16 28 H 0.39 14.42 8.84 -92.70 -0.82 13.60 16 29 H 0.12 4.12 5.35 -2.91 -0.02 4.10 16 30 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 31 H 0.39 16.24 7.09 -92.71 -0.66 15.58 16 32 H 0.39 12.64 8.84 -92.71 -0.82 11.82 16 33 H 0.29 15.04 8.30 -92.71 -0.77 14.28 16 34 H 0.08 4.42 4.65 -2.91 -0.01 4.41 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.13 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -66.67 309.82 1.13 -65.55 By element: Atomic # 1 Polarization: 50.46 SS G_CDS: -1.25 Total: 49.21 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.92 Total: -36.78 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -1.69 Total: -112.94 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.53 Total: -13.67 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.68 Total: 48.64 kcal Total: -66.67 1.13 -65.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697493527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.165 kcal (2) G-P(sol) polarization free energy of solvation -66.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds