Wall clock time and date at job start Mon Mar 30 2020 04:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 H 1.09000 * 109.70932 * 53.92552 * 3 2 1 5 5 C 1.53296 * 109.68266 * 293.39246 * 3 2 1 6 6 O 1.42963 * 109.22296 * 187.97412 * 5 3 2 7 7 C 1.42960 * 114.16729 * 62.57540 * 6 5 3 8 8 H 1.09004 * 109.51440 * 57.34795 * 7 6 5 9 9 C 1.53005 * 109.51315 * 177.49888 * 7 6 5 10 10 C 1.53293 * 109.22635 * 297.42271 * 7 6 5 11 11 N 1.47148 * 108.38505 * 52.30053 * 10 7 6 12 12 S 1.65603 * 120.98389 * 129.48722 * 11 10 7 13 13 O 1.42095 * 106.39959 * 217.61862 * 12 11 10 14 14 O 1.42096 * 106.40096 * 350.54025 * 12 11 10 15 15 C 1.76199 * 107.21576 * 104.07612 * 12 11 10 16 16 H 1.07997 * 120.00423 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99494 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00295 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99750 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47079 * 89.99884 * 19 17 15 21 21 H 1.48505 * 109.47339 * 210.00138 * 19 17 15 22 22 H 1.48499 * 109.47301 * 330.00104 * 19 17 15 23 23 H 1.08992 * 109.47509 * 65.93860 * 1 2 3 24 24 H 1.09000 * 109.47059 * 185.94012 * 1 2 3 25 25 H 1.09001 * 109.46868 * 305.93191 * 1 2 3 26 26 H 1.09005 * 109.46828 * 240.00488 * 2 1 3 27 27 H 1.08993 * 109.47487 * 120.00155 * 2 1 3 28 28 H 1.08991 * 109.51371 * 68.04719 * 5 3 2 29 29 H 1.09000 * 109.51105 * 307.88998 * 5 3 2 30 30 H 1.08994 * 109.47447 * 59.99915 * 9 7 6 31 31 H 1.08997 * 109.47165 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.46929 * 299.99846 * 9 7 6 33 33 H 1.08999 * 109.68547 * 172.02895 * 10 7 6 34 34 H 1.09004 * 109.68055 * 292.54112 * 10 7 6 35 35 H 0.97002 * 119.99939 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5928 1.9905 0.8294 5 6 1.6718 2.1203 -1.3248 6 8 2.3089 3.3983 -1.3926 7 6 3.7373 3.3413 -1.3854 8 1 4.0814 2.7266 -2.2172 9 6 4.3060 4.7550 -1.5239 10 6 4.2113 2.7260 -0.0638 11 7 3.5054 1.4501 0.1337 12 16 4.3355 0.0638 0.4962 13 8 3.6826 -0.9886 -0.2005 14 8 5.7140 0.3669 0.3318 15 6 4.0971 -0.2530 2.2130 16 1 3.4938 0.4173 2.8072 17 6 4.6802 -1.3572 2.7977 18 7 5.4145 -2.1738 2.0741 19 14 4.4269 -1.6935 4.6176 20 1 3.2218 -2.5415 4.8013 21 1 5.6157 -2.3984 5.1609 22 1 4.2419 -0.4079 5.3375 23 1 -0.3634 0.4190 -0.9383 24 1 -0.3633 -1.0221 0.1064 25 1 -0.3633 0.6031 0.8321 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 0.5909 2.2490 -1.3798 29 1 2.0084 1.5012 -2.1563 30 1 3.9630 5.3679 -0.6904 31 1 5.3950 4.7107 -1.5187 32 1 3.9650 5.1935 -2.4617 33 1 5.2859 2.5484 -0.1060 34 1 3.9834 3.4035 0.7592 35 1 5.8250 -2.9504 2.4855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044292685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:03 Heat of formation + Delta-G solvation = -136.431755 kcal Electronic energy + Delta-G solvation = -19683.090164 eV Core-core repulsion = 16614.704173 eV Total energy + Delta-G solvation = -3068.385991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20203 -35.95205 -34.81687 -33.98937 -33.36788 -33.03235 -31.07330 -27.25435 -26.25820 -25.45608 -23.44314 -21.09418 -20.50196 -18.72342 -17.23128 -16.42583 -16.14191 -15.53421 -15.15557 -14.61777 -14.39200 -14.22721 -13.83793 -13.46461 -13.13859 -12.77773 -12.23280 -12.15527 -12.02211 -11.89879 -11.46513 -11.34081 -11.24317 -10.93998 -10.85048 -10.73911 -10.63514 -10.39299 -10.20370 -9.97487 -9.85202 -9.30033 -9.17700 -8.88135 -8.08504 -6.72434 -5.34372 2.20941 3.04445 3.11416 3.18164 3.96134 4.02560 4.40820 4.60994 4.99718 5.22053 5.30861 5.33847 5.37215 5.54086 5.66171 5.76148 5.78385 5.83275 5.88629 5.89858 5.99724 6.07195 6.14403 6.19654 6.32374 6.42083 6.45185 6.77088 6.79243 7.13401 7.29909 7.43004 7.54567 7.95399 8.86261 10.20879 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.008414 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.915943 B = 3327.167723 C = 3856.261230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.157 4.157 3 C 0.131 3.869 4 H 0.071 0.929 5 C 0.055 3.945 6 O -0.383 6.383 7 C 0.073 3.927 8 H 0.060 0.940 9 C -0.142 4.142 10 C 0.093 3.907 11 N -1.013 6.013 12 S 2.715 3.285 13 O -0.998 6.998 14 O -1.007 7.007 15 C -1.019 5.019 16 H 0.102 0.898 17 C 0.134 3.866 18 N -0.845 5.845 19 Si 0.919 3.081 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.263 1.263 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 8.381 -3.679 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.024 3.976 4 H 0.089 0.911 5 C -0.023 4.023 6 O -0.302 6.302 7 C 0.014 3.986 8 H 0.078 0.922 9 C -0.200 4.200 10 C -0.034 4.034 11 N -0.849 5.849 12 S 2.817 3.183 13 O -0.988 6.988 14 O -0.997 6.997 15 C -1.152 5.152 16 H 0.120 0.880 17 C -0.084 4.084 18 N -0.475 5.475 19 Si 0.742 3.258 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.187 1.187 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.777 7.892 -4.350 10.704 hybrid contribution -0.214 -0.326 1.661 1.707 sum -5.990 7.565 -2.689 10.017 Atomic orbital electron populations 1.21774 0.95977 1.01763 1.00898 1.22437 0.95508 0.94142 1.07392 1.21513 0.80780 0.97791 0.97559 0.91129 1.23039 0.97556 0.84810 0.96890 1.87853 1.18714 1.28831 1.94759 1.22465 0.81598 0.97380 0.97200 0.92212 1.21725 1.00750 0.94782 1.02694 1.21971 0.98407 0.86030 0.96979 1.58379 1.14394 1.24495 1.87609 1.00518 0.71342 0.69929 0.76465 1.93387 1.75569 1.53867 1.75979 1.93323 1.33743 1.83805 1.88877 1.30586 1.44709 1.19388 1.20549 0.88003 1.24737 0.90148 0.92722 1.00818 1.69892 1.26463 1.12952 1.38190 0.86190 0.78713 0.79284 0.81569 1.19130 1.19942 1.18660 0.93228 0.92370 0.93051 0.87928 0.88853 0.88341 0.92780 0.91707 0.90776 0.91924 0.87956 0.91577 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.57 37.16 0.36 -1.72 16 2 C -0.16 -2.94 3.80 -26.73 -0.10 -3.04 16 3 C 0.13 2.35 3.15 -67.42 -0.21 2.14 16 4 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 5 C 0.06 0.86 5.88 37.31 0.22 1.08 16 6 O -0.38 -6.16 10.38 -35.23 -0.37 -6.52 16 7 C 0.07 1.13 3.40 -26.58 -0.09 1.04 16 8 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 9 C -0.14 -1.69 9.57 37.16 0.36 -1.33 16 10 C 0.09 1.67 6.02 -3.54 -0.02 1.65 16 11 N -1.01 -21.19 3.34 -106.03 -0.35 -21.55 16 12 S 2.72 71.60 4.45 -107.50 -0.48 71.12 16 13 O -1.00 -27.67 13.60 -57.17 -0.78 -28.45 16 14 O -1.01 -29.26 16.40 -57.17 -0.94 -30.20 16 15 C -1.02 -27.87 8.81 30.60 0.27 -27.60 16 16 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 17 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 18 N -0.85 -24.62 13.19 55.43 0.73 -23.89 16 19 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 23 H 0.05 0.59 7.12 -51.93 -0.37 0.22 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 2.10 6.46 -51.93 -0.34 1.76 16 27 H 0.09 2.04 5.85 -51.93 -0.30 1.73 16 28 H 0.10 1.25 7.19 -51.93 -0.37 0.88 16 29 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.92 6.75 -51.93 -0.35 1.57 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -33.12 290.63 -7.23 -40.35 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.08 Total: 3.47 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 0.68 Total: -24.19 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.38 Total: -45.43 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: -2.08 Total: -65.17 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 71.60 SS G_CDS: -0.48 Total: 71.12 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.12 -7.23 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044292685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.079 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds