Wall clock time and date at job start Mon Mar 30 2020 04:31:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52998 * 109.47121 * 2 1
4 4 H 1.09000 * 109.70932 * 53.92552 * 3 2 1
5 5 C 1.53296 * 109.68266 * 293.39246 * 3 2 1
6 6 O 1.42963 * 109.22296 * 187.97412 * 5 3 2
7 7 C 1.42960 * 114.16729 * 62.57540 * 6 5 3
8 8 H 1.09004 * 109.51440 * 57.34795 * 7 6 5
9 9 C 1.53005 * 109.51315 * 177.49888 * 7 6 5
10 10 C 1.53293 * 109.22635 * 297.42271 * 7 6 5
11 11 N 1.47148 * 108.38505 * 52.30053 * 10 7 6
12 12 S 1.65603 * 120.98389 * 129.48722 * 11 10 7
13 13 O 1.42095 * 106.39959 * 217.61862 * 12 11 10
14 14 O 1.42096 * 106.40096 * 350.54025 * 12 11 10
15 15 C 1.76199 * 107.21576 * 104.07612 * 12 11 10
16 16 H 1.07997 * 120.00423 * 0.02562 * 15 12 11
17 17 C 1.37880 * 119.99494 * 179.97438 * 15 12 11
18 18 N 1.31513 * 120.00295 * 0.02562 * 17 15 12
19 19 Si 1.86800 * 119.99750 * 180.02562 * 17 15 12
20 20 H 1.48501 * 109.47079 * 89.99884 * 19 17 15
21 21 H 1.48505 * 109.47339 * 210.00138 * 19 17 15
22 22 H 1.48499 * 109.47301 * 330.00104 * 19 17 15
23 23 H 1.08992 * 109.47509 * 65.93860 * 1 2 3
24 24 H 1.09000 * 109.47059 * 185.94012 * 1 2 3
25 25 H 1.09001 * 109.46868 * 305.93191 * 1 2 3
26 26 H 1.09005 * 109.46828 * 240.00488 * 2 1 3
27 27 H 1.08993 * 109.47487 * 120.00155 * 2 1 3
28 28 H 1.08991 * 109.51371 * 68.04719 * 5 3 2
29 29 H 1.09000 * 109.51105 * 307.88998 * 5 3 2
30 30 H 1.08994 * 109.47447 * 59.99915 * 9 7 6
31 31 H 1.08997 * 109.47165 * 180.02562 * 9 7 6
32 32 H 1.09000 * 109.46929 * 299.99846 * 9 7 6
33 33 H 1.08999 * 109.68547 * 172.02895 * 10 7 6
34 34 H 1.09004 * 109.68055 * 292.54112 * 10 7 6
35 35 H 0.97002 * 119.99939 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5928 1.9905 0.8294
5 6 1.6718 2.1203 -1.3248
6 8 2.3089 3.3983 -1.3926
7 6 3.7373 3.3413 -1.3854
8 1 4.0814 2.7266 -2.2172
9 6 4.3060 4.7550 -1.5239
10 6 4.2113 2.7260 -0.0638
11 7 3.5054 1.4501 0.1337
12 16 4.3355 0.0638 0.4962
13 8 3.6826 -0.9886 -0.2005
14 8 5.7140 0.3669 0.3318
15 6 4.0971 -0.2530 2.2130
16 1 3.4938 0.4173 2.8072
17 6 4.6802 -1.3572 2.7977
18 7 5.4145 -2.1738 2.0741
19 14 4.4269 -1.6935 4.6176
20 1 3.2218 -2.5415 4.8013
21 1 5.6157 -2.3984 5.1609
22 1 4.2419 -0.4079 5.3375
23 1 -0.3634 0.4190 -0.9383
24 1 -0.3633 -1.0221 0.1064
25 1 -0.3633 0.6031 0.8321
26 1 1.8933 -0.5138 -0.8901
27 1 1.8933 -0.5138 0.8899
28 1 0.5909 2.2490 -1.3798
29 1 2.0084 1.5012 -2.1563
30 1 3.9630 5.3679 -0.6904
31 1 5.3950 4.7107 -1.5187
32 1 3.9650 5.1935 -2.4617
33 1 5.2859 2.5484 -0.1060
34 1 3.9834 3.4035 0.7592
35 1 5.8250 -2.9504 2.4855
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000044292685.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:03
Heat of formation + Delta-G solvation = -136.431755 kcal
Electronic energy + Delta-G solvation = -19683.090164 eV
Core-core repulsion = 16614.704173 eV
Total energy + Delta-G solvation = -3068.385991 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.20203 -35.95205 -34.81687 -33.98937 -33.36788 -33.03235 -31.07330 -27.25435
-26.25820 -25.45608 -23.44314 -21.09418 -20.50196 -18.72342 -17.23128 -16.42583
-16.14191 -15.53421 -15.15557 -14.61777 -14.39200 -14.22721 -13.83793 -13.46461
-13.13859 -12.77773 -12.23280 -12.15527 -12.02211 -11.89879 -11.46513 -11.34081
-11.24317 -10.93998 -10.85048 -10.73911 -10.63514 -10.39299 -10.20370 -9.97487
-9.85202 -9.30033 -9.17700 -8.88135 -8.08504 -6.72434 -5.34372 2.20941
3.04445 3.11416 3.18164 3.96134 4.02560 4.40820 4.60994 4.99718
5.22053 5.30861 5.33847 5.37215 5.54086 5.66171 5.76148 5.78385
5.83275 5.88629 5.89858 5.99724 6.07195 6.14403 6.19654 6.32374
6.42083 6.45185 6.77088 6.79243 7.13401 7.29909 7.43004 7.54567
7.95399 8.86261 10.20879
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.024238 B = 0.008414 C = 0.007259
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1154.915943 B = 3327.167723 C = 3856.261230
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.157 4.157
3 C 0.131 3.869
4 H 0.071 0.929
5 C 0.055 3.945
6 O -0.383 6.383
7 C 0.073 3.927
8 H 0.060 0.940
9 C -0.142 4.142
10 C 0.093 3.907
11 N -1.013 6.013
12 S 2.715 3.285
13 O -0.998 6.998
14 O -1.007 7.007
15 C -1.019 5.019
16 H 0.102 0.898
17 C 0.134 3.866
18 N -0.845 5.845
19 Si 0.919 3.081
20 H -0.266 1.266
21 H -0.274 1.274
22 H -0.263 1.263
23 H 0.049 0.951
24 H 0.057 0.943
25 H 0.050 0.950
26 H 0.102 0.898
27 H 0.093 0.907
28 H 0.099 0.901
29 H 0.054 0.946
30 H 0.064 0.936
31 H 0.073 0.927
32 H 0.062 0.938
33 H 0.102 0.898
34 H 0.066 0.934
35 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.316 8.381 -3.679 11.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.195 4.195
3 C 0.024 3.976
4 H 0.089 0.911
5 C -0.023 4.023
6 O -0.302 6.302
7 C 0.014 3.986
8 H 0.078 0.922
9 C -0.200 4.200
10 C -0.034 4.034
11 N -0.849 5.849
12 S 2.817 3.183
13 O -0.988 6.988
14 O -0.997 6.997
15 C -1.152 5.152
16 H 0.120 0.880
17 C -0.084 4.084
18 N -0.475 5.475
19 Si 0.742 3.258
20 H -0.191 1.191
21 H -0.199 1.199
22 H -0.187 1.187
23 H 0.068 0.932
24 H 0.076 0.924
25 H 0.069 0.931
26 H 0.121 0.879
27 H 0.111 0.889
28 H 0.117 0.883
29 H 0.072 0.928
30 H 0.083 0.917
31 H 0.092 0.908
32 H 0.081 0.919
33 H 0.120 0.880
34 H 0.084 0.916
35 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -5.777 7.892 -4.350 10.704
hybrid contribution -0.214 -0.326 1.661 1.707
sum -5.990 7.565 -2.689 10.017
Atomic orbital electron populations
1.21774 0.95977 1.01763 1.00898 1.22437 0.95508 0.94142 1.07392
1.21513 0.80780 0.97791 0.97559 0.91129 1.23039 0.97556 0.84810
0.96890 1.87853 1.18714 1.28831 1.94759 1.22465 0.81598 0.97380
0.97200 0.92212 1.21725 1.00750 0.94782 1.02694 1.21971 0.98407
0.86030 0.96979 1.58379 1.14394 1.24495 1.87609 1.00518 0.71342
0.69929 0.76465 1.93387 1.75569 1.53867 1.75979 1.93323 1.33743
1.83805 1.88877 1.30586 1.44709 1.19388 1.20549 0.88003 1.24737
0.90148 0.92722 1.00818 1.69892 1.26463 1.12952 1.38190 0.86190
0.78713 0.79284 0.81569 1.19130 1.19942 1.18660 0.93228 0.92370
0.93051 0.87928 0.88853 0.88341 0.92780 0.91707 0.90776 0.91924
0.87956 0.91577 0.89878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.08 9.57 37.16 0.36 -1.72 16
2 C -0.16 -2.94 3.80 -26.73 -0.10 -3.04 16
3 C 0.13 2.35 3.15 -67.42 -0.21 2.14 16
4 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
5 C 0.06 0.86 5.88 37.31 0.22 1.08 16
6 O -0.38 -6.16 10.38 -35.23 -0.37 -6.52 16
7 C 0.07 1.13 3.40 -26.58 -0.09 1.04 16
8 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
9 C -0.14 -1.69 9.57 37.16 0.36 -1.33 16
10 C 0.09 1.67 6.02 -3.54 -0.02 1.65 16
11 N -1.01 -21.19 3.34 -106.03 -0.35 -21.55 16
12 S 2.72 71.60 4.45 -107.50 -0.48 71.12 16
13 O -1.00 -27.67 13.60 -57.17 -0.78 -28.45 16
14 O -1.01 -29.26 16.40 -57.17 -0.94 -30.20 16
15 C -1.02 -27.87 8.81 30.60 0.27 -27.60 16
16 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16
17 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16
18 N -0.85 -24.62 13.19 55.43 0.73 -23.89 16
19 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 16
20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16
21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16
22 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16
23 H 0.05 0.59 7.12 -51.93 -0.37 0.22 16
24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
26 H 0.10 2.10 6.46 -51.93 -0.34 1.76 16
27 H 0.09 2.04 5.85 -51.93 -0.30 1.73 16
28 H 0.10 1.25 7.19 -51.93 -0.37 0.88 16
29 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16
30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.10 1.92 6.75 -51.93 -0.35 1.57 16
34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
35 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16
LS Contribution 290.63 15.07 4.38 4.38
Total: -1.00 -33.12 290.63 -7.23 -40.35
By element:
Atomic # 1 Polarization: 8.55 SS G_CDS: -5.08 Total: 3.47 kcal
Atomic # 6 Polarization: -24.87 SS G_CDS: 0.68 Total: -24.19 kcal
Atomic # 7 Polarization: -45.81 SS G_CDS: 0.38 Total: -45.43 kcal
Atomic # 8 Polarization: -63.09 SS G_CDS: -2.08 Total: -65.17 kcal
Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal
Atomic # 16 Polarization: 71.60 SS G_CDS: -0.48 Total: 71.12 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -33.12 -7.23 -40.35 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044292685.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.079 kcal
(2) G-P(sol) polarization free energy of solvation -33.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.204 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds