Wall clock time and date at job start Mon Mar 30 2020 04:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 H 1.09000 * 109.70932 * 53.92552 * 3 2 1 5 5 C 1.53296 * 109.68266 * 293.39246 * 3 2 1 6 6 O 1.42963 * 109.22296 * 187.97412 * 5 3 2 7 7 C 1.42960 * 114.16729 * 62.57540 * 6 5 3 8 8 H 1.09004 * 109.51440 * 57.34795 * 7 6 5 9 9 C 1.53005 * 109.51315 * 177.49888 * 7 6 5 10 10 C 1.53293 * 109.22635 * 297.42271 * 7 6 5 11 11 N 1.47148 * 108.38505 * 52.30053 * 10 7 6 12 12 S 1.65603 * 120.98389 * 129.48722 * 11 10 7 13 13 O 1.42095 * 106.39959 * 217.61862 * 12 11 10 14 14 O 1.42096 * 106.40096 * 350.54025 * 12 11 10 15 15 C 1.76199 * 107.21576 * 104.07612 * 12 11 10 16 16 H 1.07997 * 120.00423 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99494 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00295 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99750 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47079 * 89.99884 * 19 17 15 21 21 H 1.48505 * 109.47339 * 210.00138 * 19 17 15 22 22 H 1.48499 * 109.47301 * 330.00104 * 19 17 15 23 23 H 1.08992 * 109.47509 * 65.93860 * 1 2 3 24 24 H 1.09000 * 109.47059 * 185.94012 * 1 2 3 25 25 H 1.09001 * 109.46868 * 305.93191 * 1 2 3 26 26 H 1.09005 * 109.46828 * 240.00488 * 2 1 3 27 27 H 1.08993 * 109.47487 * 120.00155 * 2 1 3 28 28 H 1.08991 * 109.51371 * 68.04719 * 5 3 2 29 29 H 1.09000 * 109.51105 * 307.88998 * 5 3 2 30 30 H 1.08994 * 109.47447 * 59.99915 * 9 7 6 31 31 H 1.08997 * 109.47165 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.46929 * 299.99846 * 9 7 6 33 33 H 1.08999 * 109.68547 * 172.02895 * 10 7 6 34 34 H 1.09004 * 109.68055 * 292.54112 * 10 7 6 35 35 H 0.97002 * 119.99939 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5928 1.9905 0.8294 5 6 1.6718 2.1203 -1.3248 6 8 2.3089 3.3983 -1.3926 7 6 3.7373 3.3413 -1.3854 8 1 4.0814 2.7266 -2.2172 9 6 4.3060 4.7550 -1.5239 10 6 4.2113 2.7260 -0.0638 11 7 3.5054 1.4501 0.1337 12 16 4.3355 0.0638 0.4962 13 8 3.6826 -0.9886 -0.2005 14 8 5.7140 0.3669 0.3318 15 6 4.0971 -0.2530 2.2130 16 1 3.4938 0.4173 2.8072 17 6 4.6802 -1.3572 2.7977 18 7 5.4145 -2.1738 2.0741 19 14 4.4269 -1.6935 4.6176 20 1 3.2218 -2.5415 4.8013 21 1 5.6157 -2.3984 5.1609 22 1 4.2419 -0.4079 5.3375 23 1 -0.3634 0.4190 -0.9383 24 1 -0.3633 -1.0221 0.1064 25 1 -0.3633 0.6031 0.8321 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 0.5909 2.2490 -1.3798 29 1 2.0084 1.5012 -2.1563 30 1 3.9630 5.3679 -0.6904 31 1 5.3950 4.7107 -1.5187 32 1 3.9650 5.1935 -2.4617 33 1 5.2859 2.5484 -0.1060 34 1 3.9834 3.4035 0.7592 35 1 5.8250 -2.9504 2.4855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044292685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:03 Heat of formation + Delta-G solvation = -161.985968 kcal Electronic energy + Delta-G solvation = -19684.198277 eV Core-core repulsion = 16614.704173 eV Total energy + Delta-G solvation = -3069.494105 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54840 -37.84729 -36.48202 -36.08725 -35.23793 -34.65688 -32.32326 -28.49877 -28.32449 -26.89243 -24.72231 -22.47184 -21.91448 -20.74715 -19.10650 -18.03578 -17.74570 -17.10200 -16.96901 -16.20517 -15.98530 -15.59723 -15.54479 -15.25138 -14.50224 -14.08591 -13.99577 -13.40699 -13.36758 -13.28224 -13.12793 -13.04651 -12.74759 -12.61598 -12.55728 -12.34743 -12.12113 -12.08692 -11.93565 -11.46462 -11.29690 -11.27343 -10.92343 -10.82683 -9.64676 -8.77072 -7.50537 0.25486 1.30446 1.30663 1.46830 2.16867 2.54541 2.67962 2.77829 3.65447 3.73175 3.81343 3.97432 4.08985 4.09821 4.26019 4.40839 4.44055 4.52577 4.55337 4.70263 4.76468 4.84730 4.88199 4.95175 5.02006 5.16223 5.26549 5.29916 5.33077 5.38096 5.60044 5.86788 5.90668 6.17495 6.74991 8.17625 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.008414 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.915943 B = 3327.167723 C = 3856.261230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C 0.124 3.876 4 H 0.087 0.913 5 C 0.058 3.942 6 O -0.381 6.381 7 C 0.073 3.927 8 H 0.052 0.948 9 C -0.136 4.136 10 C 0.083 3.917 11 N -1.014 6.014 12 S 2.717 3.283 13 O -1.024 7.024 14 O -1.045 7.045 15 C -1.038 5.038 16 H 0.113 0.887 17 C 0.073 3.927 18 N -0.893 5.893 19 Si 0.986 3.014 20 H -0.252 1.252 21 H -0.262 1.262 22 H -0.250 1.250 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.137 0.863 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.111 10.073 -2.943 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C 0.018 3.982 4 H 0.105 0.895 5 C -0.020 4.020 6 O -0.299 6.299 7 C 0.013 3.987 8 H 0.070 0.930 9 C -0.193 4.193 10 C -0.043 4.043 11 N -0.853 5.853 12 S 2.821 3.179 13 O -1.014 7.014 14 O -1.036 7.036 15 C -1.171 5.171 16 H 0.131 0.869 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.804 3.196 20 H -0.176 1.176 21 H -0.186 1.186 22 H -0.174 1.174 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.154 0.846 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.572 9.591 -3.634 12.749 hybrid contribution 0.323 -0.813 1.371 1.626 sum -7.248 8.778 -2.263 11.607 Atomic orbital electron populations 1.21742 0.92117 1.02623 1.03207 1.22309 0.98916 0.94097 1.04271 1.21834 0.78725 0.97740 0.99889 0.89483 1.23135 0.99619 0.84412 0.94844 1.87869 1.18745 1.28839 1.94487 1.22564 0.81616 0.99361 0.95129 0.92989 1.21738 1.01383 0.92307 1.03909 1.22276 0.97601 0.84988 0.99422 1.57982 1.15848 1.23993 1.87440 1.00096 0.70775 0.70655 0.76370 1.93361 1.75703 1.55980 1.76364 1.93261 1.36360 1.84716 1.89249 1.30913 1.44819 1.19944 1.21407 0.86853 1.25966 0.89417 0.92270 1.06382 1.69981 1.27843 1.13942 1.40666 0.85190 0.79576 0.79930 0.74900 1.17600 1.18573 1.17356 0.90391 0.92278 0.91286 0.90475 0.92645 0.84569 0.93391 0.90817 0.89604 0.90339 0.89434 0.89799 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.57 71.98 0.69 -2.96 16 2 C -0.16 -5.90 3.80 30.59 0.12 -5.78 16 3 C 0.12 4.32 3.15 44.97 0.14 4.46 16 4 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 5 C 0.06 1.66 5.88 72.08 0.42 2.08 16 6 O -0.38 -11.20 10.38 -148.98 -1.55 -12.75 16 7 C 0.07 2.15 3.40 30.69 0.10 2.25 16 8 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 9 C -0.14 -2.88 9.57 71.98 0.69 -2.19 16 10 C 0.08 2.95 6.02 86.35 0.52 3.47 16 11 N -1.01 -42.65 3.34 -489.38 -1.63 -44.29 16 12 S 2.72 148.45 4.45 -56.49 -0.25 148.20 16 13 O -1.02 -59.51 13.60 -128.00 -1.74 -61.25 16 14 O -1.05 -63.38 16.40 -128.00 -2.10 -65.48 16 15 C -1.04 -57.85 8.81 67.73 0.60 -57.26 16 16 H 0.11 5.81 7.81 -2.91 -0.02 5.79 16 17 C 0.07 4.06 5.46 84.66 0.46 4.52 16 18 N -0.89 -53.49 13.19 21.45 0.28 -53.21 16 19 Si 0.99 41.55 29.54 68.60 2.03 43.57 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 23 H 0.08 1.60 7.12 -2.39 -0.02 1.58 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 3.25 6.46 -2.38 -0.02 3.24 16 27 H 0.05 2.49 5.85 -2.39 -0.01 2.47 16 28 H 0.14 2.87 7.19 -2.39 -0.02 2.86 16 29 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 3.36 6.75 -2.39 -0.02 3.34 16 34 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16 35 H 0.30 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -74.18 290.63 -0.15 -74.32 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 1.07 Total: 22.29 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 3.74 Total: -51.41 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -1.35 Total: -97.50 kcal Atomic # 8 Polarization: -134.10 SS G_CDS: -5.39 Total: -139.48 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 148.45 SS G_CDS: -0.25 Total: 148.20 kcal Total: -74.18 -0.15 -74.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044292685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.661 kcal (2) G-P(sol) polarization free energy of solvation -74.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds