Wall clock time and date at job start Mon Mar 30 2020 04:31:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52998 * 109.47121 * 2 1
4 4 H 1.09000 * 109.70932 * 53.92552 * 3 2 1
5 5 C 1.53296 * 109.68266 * 293.39246 * 3 2 1
6 6 O 1.42963 * 109.22296 * 187.97412 * 5 3 2
7 7 C 1.42960 * 114.16729 * 62.57540 * 6 5 3
8 8 H 1.09004 * 109.51440 * 57.34795 * 7 6 5
9 9 C 1.53005 * 109.51315 * 177.49888 * 7 6 5
10 10 C 1.53293 * 109.22635 * 297.42271 * 7 6 5
11 11 N 1.47148 * 108.38505 * 52.30053 * 10 7 6
12 12 S 1.65603 * 120.98389 * 129.48722 * 11 10 7
13 13 O 1.42095 * 106.39959 * 217.61862 * 12 11 10
14 14 O 1.42096 * 106.40096 * 350.54025 * 12 11 10
15 15 C 1.76199 * 107.21576 * 104.07612 * 12 11 10
16 16 H 1.07997 * 120.00423 * 0.02562 * 15 12 11
17 17 C 1.37880 * 119.99494 * 179.97438 * 15 12 11
18 18 N 1.31513 * 120.00295 * 0.02562 * 17 15 12
19 19 Si 1.86800 * 119.99750 * 180.02562 * 17 15 12
20 20 H 1.48501 * 109.47079 * 89.99884 * 19 17 15
21 21 H 1.48505 * 109.47339 * 210.00138 * 19 17 15
22 22 H 1.48499 * 109.47301 * 330.00104 * 19 17 15
23 23 H 1.08992 * 109.47509 * 65.93860 * 1 2 3
24 24 H 1.09000 * 109.47059 * 185.94012 * 1 2 3
25 25 H 1.09001 * 109.46868 * 305.93191 * 1 2 3
26 26 H 1.09005 * 109.46828 * 240.00488 * 2 1 3
27 27 H 1.08993 * 109.47487 * 120.00155 * 2 1 3
28 28 H 1.08991 * 109.51371 * 68.04719 * 5 3 2
29 29 H 1.09000 * 109.51105 * 307.88998 * 5 3 2
30 30 H 1.08994 * 109.47447 * 59.99915 * 9 7 6
31 31 H 1.08997 * 109.47165 * 180.02562 * 9 7 6
32 32 H 1.09000 * 109.46929 * 299.99846 * 9 7 6
33 33 H 1.08999 * 109.68547 * 172.02895 * 10 7 6
34 34 H 1.09004 * 109.68055 * 292.54112 * 10 7 6
35 35 H 0.97002 * 119.99939 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5928 1.9905 0.8294
5 6 1.6718 2.1203 -1.3248
6 8 2.3089 3.3983 -1.3926
7 6 3.7373 3.3413 -1.3854
8 1 4.0814 2.7266 -2.2172
9 6 4.3060 4.7550 -1.5239
10 6 4.2113 2.7260 -0.0638
11 7 3.5054 1.4501 0.1337
12 16 4.3355 0.0638 0.4962
13 8 3.6826 -0.9886 -0.2005
14 8 5.7140 0.3669 0.3318
15 6 4.0971 -0.2530 2.2130
16 1 3.4938 0.4173 2.8072
17 6 4.6802 -1.3572 2.7977
18 7 5.4145 -2.1738 2.0741
19 14 4.4269 -1.6935 4.6176
20 1 3.2218 -2.5415 4.8013
21 1 5.6157 -2.3984 5.1609
22 1 4.2419 -0.4079 5.3375
23 1 -0.3634 0.4190 -0.9383
24 1 -0.3633 -1.0221 0.1064
25 1 -0.3633 0.6031 0.8321
26 1 1.8933 -0.5138 -0.8901
27 1 1.8933 -0.5138 0.8899
28 1 0.5909 2.2490 -1.3798
29 1 2.0084 1.5012 -2.1563
30 1 3.9630 5.3679 -0.6904
31 1 5.3950 4.7107 -1.5187
32 1 3.9650 5.1935 -2.4617
33 1 5.2859 2.5484 -0.1060
34 1 3.9834 3.4035 0.7592
35 1 5.8250 -2.9504 2.4855
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000044292685.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:03
Heat of formation + Delta-G solvation = -161.985968 kcal
Electronic energy + Delta-G solvation = -19684.198277 eV
Core-core repulsion = 16614.704173 eV
Total energy + Delta-G solvation = -3069.494105 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.54840 -37.84729 -36.48202 -36.08725 -35.23793 -34.65688 -32.32326 -28.49877
-28.32449 -26.89243 -24.72231 -22.47184 -21.91448 -20.74715 -19.10650 -18.03578
-17.74570 -17.10200 -16.96901 -16.20517 -15.98530 -15.59723 -15.54479 -15.25138
-14.50224 -14.08591 -13.99577 -13.40699 -13.36758 -13.28224 -13.12793 -13.04651
-12.74759 -12.61598 -12.55728 -12.34743 -12.12113 -12.08692 -11.93565 -11.46462
-11.29690 -11.27343 -10.92343 -10.82683 -9.64676 -8.77072 -7.50537 0.25486
1.30446 1.30663 1.46830 2.16867 2.54541 2.67962 2.77829 3.65447
3.73175 3.81343 3.97432 4.08985 4.09821 4.26019 4.40839 4.44055
4.52577 4.55337 4.70263 4.76468 4.84730 4.88199 4.95175 5.02006
5.16223 5.26549 5.29916 5.33077 5.38096 5.60044 5.86788 5.90668
6.17495 6.74991 8.17625
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.024238 B = 0.008414 C = 0.007259
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1154.915943 B = 3327.167723 C = 3856.261230
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.157 4.157
3 C 0.124 3.876
4 H 0.087 0.913
5 C 0.058 3.942
6 O -0.381 6.381
7 C 0.073 3.927
8 H 0.052 0.948
9 C -0.136 4.136
10 C 0.083 3.917
11 N -1.014 6.014
12 S 2.717 3.283
13 O -1.024 7.024
14 O -1.045 7.045
15 C -1.038 5.038
16 H 0.113 0.887
17 C 0.073 3.927
18 N -0.893 5.893
19 Si 0.986 3.014
20 H -0.252 1.252
21 H -0.262 1.262
22 H -0.250 1.250
23 H 0.077 0.923
24 H 0.058 0.942
25 H 0.068 0.932
26 H 0.077 0.923
27 H 0.055 0.945
28 H 0.137 0.863
29 H 0.048 0.952
30 H 0.073 0.927
31 H 0.085 0.915
32 H 0.078 0.922
33 H 0.087 0.913
34 H 0.084 0.916
35 H 0.299 0.701
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.111 10.073 -2.943 13.264
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.196 4.196
3 C 0.018 3.982
4 H 0.105 0.895
5 C -0.020 4.020
6 O -0.299 6.299
7 C 0.013 3.987
8 H 0.070 0.930
9 C -0.193 4.193
10 C -0.043 4.043
11 N -0.853 5.853
12 S 2.821 3.179
13 O -1.014 7.014
14 O -1.036 7.036
15 C -1.171 5.171
16 H 0.131 0.869
17 C -0.140 4.140
18 N -0.524 5.524
19 Si 0.804 3.196
20 H -0.176 1.176
21 H -0.186 1.186
22 H -0.174 1.174
23 H 0.096 0.904
24 H 0.077 0.923
25 H 0.087 0.913
26 H 0.095 0.905
27 H 0.074 0.926
28 H 0.154 0.846
29 H 0.066 0.934
30 H 0.092 0.908
31 H 0.104 0.896
32 H 0.097 0.903
33 H 0.106 0.894
34 H 0.102 0.898
35 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -7.572 9.591 -3.634 12.749
hybrid contribution 0.323 -0.813 1.371 1.626
sum -7.248 8.778 -2.263 11.607
Atomic orbital electron populations
1.21742 0.92117 1.02623 1.03207 1.22309 0.98916 0.94097 1.04271
1.21834 0.78725 0.97740 0.99889 0.89483 1.23135 0.99619 0.84412
0.94844 1.87869 1.18745 1.28839 1.94487 1.22564 0.81616 0.99361
0.95129 0.92989 1.21738 1.01383 0.92307 1.03909 1.22276 0.97601
0.84988 0.99422 1.57982 1.15848 1.23993 1.87440 1.00096 0.70775
0.70655 0.76370 1.93361 1.75703 1.55980 1.76364 1.93261 1.36360
1.84716 1.89249 1.30913 1.44819 1.19944 1.21407 0.86853 1.25966
0.89417 0.92270 1.06382 1.69981 1.27843 1.13942 1.40666 0.85190
0.79576 0.79930 0.74900 1.17600 1.18573 1.17356 0.90391 0.92278
0.91286 0.90475 0.92645 0.84569 0.93391 0.90817 0.89604 0.90339
0.89434 0.89799 0.89106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.65 9.57 71.98 0.69 -2.96 16
2 C -0.16 -5.90 3.80 30.59 0.12 -5.78 16
3 C 0.12 4.32 3.15 44.97 0.14 4.46 16
4 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16
5 C 0.06 1.66 5.88 72.08 0.42 2.08 16
6 O -0.38 -11.20 10.38 -148.98 -1.55 -12.75 16
7 C 0.07 2.15 3.40 30.69 0.10 2.25 16
8 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16
9 C -0.14 -2.88 9.57 71.98 0.69 -2.19 16
10 C 0.08 2.95 6.02 86.35 0.52 3.47 16
11 N -1.01 -42.65 3.34 -489.38 -1.63 -44.29 16
12 S 2.72 148.45 4.45 -56.49 -0.25 148.20 16
13 O -1.02 -59.51 13.60 -128.00 -1.74 -61.25 16
14 O -1.05 -63.38 16.40 -128.00 -2.10 -65.48 16
15 C -1.04 -57.85 8.81 67.73 0.60 -57.26 16
16 H 0.11 5.81 7.81 -2.91 -0.02 5.79 16
17 C 0.07 4.06 5.46 84.66 0.46 4.52 16
18 N -0.89 -53.49 13.19 21.45 0.28 -53.21 16
19 Si 0.99 41.55 29.54 68.60 2.03 43.57 16
20 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16
21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16
22 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16
23 H 0.08 1.60 7.12 -2.39 -0.02 1.58 16
24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
26 H 0.08 3.25 6.46 -2.38 -0.02 3.24 16
27 H 0.05 2.49 5.85 -2.39 -0.01 2.47 16
28 H 0.14 2.87 7.19 -2.39 -0.02 2.86 16
29 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16
30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
33 H 0.09 3.36 6.75 -2.39 -0.02 3.34 16
34 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16
35 H 0.30 16.07 8.31 -92.71 -0.77 15.30 16
Total: -1.00 -74.18 290.63 -0.15 -74.32
By element:
Atomic # 1 Polarization: 21.22 SS G_CDS: 1.07 Total: 22.29 kcal
Atomic # 6 Polarization: -55.15 SS G_CDS: 3.74 Total: -51.41 kcal
Atomic # 7 Polarization: -96.15 SS G_CDS: -1.35 Total: -97.50 kcal
Atomic # 8 Polarization: -134.10 SS G_CDS: -5.39 Total: -139.48 kcal
Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal
Atomic # 16 Polarization: 148.45 SS G_CDS: -0.25 Total: 148.20 kcal
Total: -74.18 -0.15 -74.32 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044292685.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.661 kcal
(2) G-P(sol) polarization free energy of solvation -74.176 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.838 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal
(6) G-S(sol) free energy of system = (1) + (5) -161.986 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds