Wall clock time and date at job start Mon Mar 30 2020 04:57:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.44236 * 2 1
4 4 O 1.43004 * 109.44701 * 240.06397 * 2 1 3
5 5 C 1.35932 * 116.69526 * 286.29585 * 4 2 1
6 6 C 1.38417 * 120.67370 * 147.22553 * 5 4 2
7 7 C 1.38295 * 119.87197 * 180.02562 * 6 5 4
8 8 C 1.38337 * 120.29137 * 0.02562 * 7 6 5
9 9 C 1.50696 * 119.89486 * 179.97438 * 8 7 6
10 10 O 1.42906 * 109.47042 * 90.00152 * 9 8 7
11 11 C 1.38216 * 120.21458 * 0.22752 * 8 7 6
12 12 C 1.38636 * 119.80561 * 359.48904 * 11 8 7
13 13 N 1.39943 * 120.74516 * 180.31300 * 12 11 8
14 14 C 1.37102 * 120.49412 * 15.68045 * 13 12 11
15 15 H 1.07998 * 119.99503 * 314.46213 * 14 13 12
16 16 C 1.38870 * 120.00072 * 134.46169 * 14 13 12
17 17 N 1.31442 * 119.99775 * 160.51395 * 16 14 13
18 18 Si 1.86798 * 120.00334 * 340.51162 * 16 14 13
19 19 H 1.48499 * 109.47133 * 95.24768 * 18 16 14
20 20 H 1.48497 * 109.46979 * 215.25034 * 18 16 14
21 21 H 1.48504 * 109.46746 * 335.25077 * 18 16 14
22 22 C 1.35077 * 119.01164 * 195.67885 * 13 12 11
23 23 O 1.21291 * 120.12650 * 181.73227 * 22 13 12
24 24 H 1.09000 * 109.46879 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.47655 * 299.93717 * 1 2 3
26 26 H 1.09001 * 109.47108 * 59.94252 * 1 2 3
27 27 H 1.07999 * 120.06465 * 0.04405 * 6 5 4
28 28 H 1.08003 * 119.85810 * 179.97438 * 7 6 5
29 29 H 1.08998 * 109.47573 * 329.99864 * 9 8 7
30 30 H 1.09002 * 109.47507 * 209.99711 * 9 8 7
31 31 H 0.96694 * 114.00065 * 180.02562 * 10 9 8
32 32 H 1.08005 * 120.09682 * 179.74491 * 11 8 7
33 33 H 0.96997 * 119.99897 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8928 1.0279 0.0000
4 8 2.0061 -0.6729 -1.1686
5 6 1.8881 -2.0270 -1.1842
6 6 1.6602 -2.7023 -2.3708
7 6 1.5423 -4.0802 -2.3674
8 6 1.6506 -4.7870 -1.1831
9 6 1.5201 -6.2882 -1.1897
10 8 2.8078 -6.8775 -1.3817
11 6 1.8729 -4.1201 0.0069
12 6 1.9980 -2.7394 0.0103
13 7 2.2298 -2.0450 1.2029
14 6 2.6525 -2.7104 2.3246
15 1 2.1770 -3.6356 2.6148
16 6 3.6920 -2.1947 3.0874
17 7 3.8521 -2.5879 4.3314
18 14 4.8629 -0.9423 2.3458
19 1 4.4072 0.4277 2.6931
20 1 6.2288 -1.1614 2.8855
21 1 4.8832 -1.0977 0.8691
22 6 2.0308 -0.7092 1.2325
23 8 2.2556 -0.0826 2.2463
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5128 0.8905
26 1 -0.3633 0.5147 -0.8895
27 1 1.5749 -2.1543 -3.2974
28 1 1.3641 -4.6069 -3.2934
29 1 0.8572 -6.5918 -1.9999
30 1 1.1066 -6.6213 -0.2378
31 1 2.7996 -7.8442 -1.3971
32 1 1.9530 -4.6734 0.9310
33 1 4.5784 -2.2281 4.8641
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000074331473.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:57:11
Heat of formation + Delta-G solvation = -75.128456 kcal
Electronic energy + Delta-G solvation = -20374.458603 eV
Core-core repulsion = 17173.286971 eV
Total energy + Delta-G solvation = -3201.171631 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.099 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.99407 -38.37798 -37.49800 -36.23917 -34.80502 -32.33869 -31.61961 -30.25567
-29.12322 -26.05744 -25.46466 -23.22222 -22.30505 -21.73766 -18.68987 -18.51111
-17.40535 -17.27699 -16.42862 -15.63441 -15.50882 -14.85704 -14.65330 -14.43184
-13.81896 -13.65071 -13.27096 -13.09522 -12.86909 -12.74998 -12.39657 -12.24440
-12.06080 -11.76236 -11.37139 -10.97828 -10.75658 -10.62129 -10.41074 -10.14173
-9.94135 -9.55086 -8.81542 -8.64581 -8.12245 -7.11742 -6.44047 -4.28279
1.56077 1.75880 3.02013 3.33975 3.38337 3.44704 3.73166 4.02911
4.08776 4.32903 4.69652 4.75036 5.05909 5.11978 5.18871 5.24553
5.28257 5.44162 5.50957 5.60748 5.72581 5.87098 5.92656 6.07768
6.19812 6.38075 6.50893 6.74826 6.94349 7.12176 7.46187 7.58786
7.73050 7.83951 8.43352 8.47677 9.12323 9.34012 10.60455
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.018122 B = 0.009662 C = 0.007187
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1544.693315 B = 2897.286553 C = 3895.204427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.075 3.925
3 H 0.135 0.865
4 O -0.308 6.308
5 C 0.063 3.937
6 C -0.118 4.118
7 C -0.118 4.118
8 C -0.095 4.095
9 C 0.124 3.876
10 O -0.565 6.565
11 C -0.095 4.095
12 C 0.115 3.885
13 N -0.396 5.396
14 C -0.366 4.366
15 H 0.106 0.894
16 C 0.102 3.898
17 N -0.850 5.850
18 Si 0.889 3.111
19 H -0.254 1.254
20 H -0.292 1.292
21 H -0.272 1.272
22 C 0.434 3.566
23 O -0.508 6.508
24 H 0.064 0.936
25 H 0.078 0.922
26 H 0.074 0.926
27 H 0.129 0.871
28 H 0.122 0.878
29 H 0.051 0.949
30 H 0.054 0.946
31 H 0.374 0.626
32 H 0.138 0.862
33 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.476 -3.270 -12.583 14.525
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C 0.015 3.985
3 H 0.152 0.848
4 O -0.223 6.223
5 C 0.017 3.983
6 C -0.138 4.138
7 C -0.137 4.137
8 C -0.096 4.096
9 C 0.047 3.953
10 O -0.371 6.371
11 C -0.116 4.116
12 C 0.017 3.983
13 N -0.107 5.107
14 C -0.491 4.491
15 H 0.123 0.877
16 C -0.109 4.109
17 N -0.482 5.482
18 Si 0.717 3.283
19 H -0.179 1.179
20 H -0.220 1.220
21 H -0.196 1.196
22 C 0.225 3.775
23 O -0.386 6.386
24 H 0.083 0.917
25 H 0.097 0.903
26 H 0.093 0.907
27 H 0.147 0.853
28 H 0.140 0.860
29 H 0.069 0.931
30 H 0.072 0.928
31 H 0.221 0.779
32 H 0.156 0.844
33 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -5.988 -2.123 -11.880 13.472
hybrid contribution 0.448 -0.063 0.027 0.453
sum -5.540 -2.186 -11.853 13.265
Atomic orbital electron populations
1.22253 0.93410 1.03569 1.03439 1.22864 0.96031 0.97214 0.82342
0.84761 1.86151 1.79384 1.16453 1.40293 1.18739 1.03943 0.82530
0.93119 1.20273 1.03529 0.93937 0.96021 1.20573 1.03174 0.92821
0.97157 1.19326 1.03234 0.93920 0.93114 1.20899 0.84752 0.89952
0.99709 1.86634 1.29990 1.24200 1.96226 1.20624 1.00503 0.91927
0.98594 1.18693 1.00666 0.92908 0.86049 1.41489 1.55488 1.05653
1.08107 1.18776 1.19197 1.10466 1.00636 0.87656 1.25195 0.95906
0.95650 0.94166 1.69723 1.30109 1.42317 1.06065 0.86636 0.78494
0.83338 0.79838 1.17918 1.21964 1.19648 1.21267 0.82075 0.83949
0.90252 1.90611 1.50101 1.64753 1.33162 0.91714 0.90305 0.90705
0.85299 0.85981 0.93118 0.92817 0.77926 0.84393 0.91235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.61 9.30 37.16 0.35 -2.27 16
2 C 0.08 1.44 3.81 -27.86 -0.11 1.33 16
3 H 0.13 2.28 8.14 -51.93 -0.42 1.85 16
4 O -0.31 -6.02 10.18 -19.53 -0.20 -6.22 16
5 C 0.06 1.25 5.85 -39.04 -0.23 1.02 16
6 C -0.12 -1.91 10.00 -39.49 -0.39 -2.31 16
7 C -0.12 -1.77 9.69 -39.52 -0.38 -2.15 16
8 C -0.10 -1.57 5.51 -104.60 -0.58 -2.14 16
9 C 0.12 1.60 7.17 36.00 0.26 1.86 16
10 O -0.57 -7.70 13.64 -35.23 -0.48 -8.18 16
11 C -0.10 -1.91 9.00 -39.44 -0.35 -2.27 16
12 C 0.11 2.54 6.35 -83.53 -0.53 2.01 16
13 N -0.40 -10.10 2.33 -58.79 -0.14 -10.24 16
14 C -0.37 -10.40 8.87 -14.96 -0.13 -10.53 16
15 H 0.11 3.04 7.04 -52.49 -0.37 2.67 16
16 C 0.10 3.02 4.86 -17.48 -0.08 2.93 16
17 N -0.85 -25.47 13.96 55.49 0.77 -24.69 16
18 Si 0.89 24.05 25.01 -169.99 -4.25 19.80 16
19 H -0.25 -7.01 6.46 56.52 0.36 -6.65 16
20 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16
21 H -0.27 -7.40 7.11 56.52 0.40 -7.00 16
22 C 0.43 10.70 5.23 -10.82 -0.06 10.64 16
23 O -0.51 -14.04 13.08 5.55 0.07 -13.96 16
24 H 0.06 1.05 7.81 -51.93 -0.41 0.65 16
25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
27 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16
28 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16
29 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16
30 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16
31 H 0.37 2.98 9.12 45.56 0.42 3.40 16
32 H 0.14 2.86 6.62 -52.48 -0.35 2.51 16
33 H 0.28 7.78 8.31 -40.82 -0.34 7.44 16
LS Contribution 280.10 15.07 4.22 4.22
Total: -1.00 -34.49 280.10 -5.08 -39.57
By element:
Atomic # 1 Polarization: 4.42 SS G_CDS: -2.83 Total: 1.59 kcal
Atomic # 6 Polarization: 0.37 SS G_CDS: -2.25 Total: -1.88 kcal
Atomic # 7 Polarization: -35.57 SS G_CDS: 0.64 Total: -34.93 kcal
Atomic # 8 Polarization: -27.76 SS G_CDS: -0.61 Total: -28.37 kcal
Atomic # 14 Polarization: 24.05 SS G_CDS: -4.25 Total: 19.80 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -34.49 -5.08 -39.57 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000074331473.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.563 kcal
(2) G-P(sol) polarization free energy of solvation -34.489 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.052 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds