Wall clock time and date at job start Mon Mar 30 2020 04:57:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.44236 * 2 1
4 4 O 1.43004 * 109.44701 * 240.06397 * 2 1 3
5 5 C 1.35932 * 116.69526 * 286.29585 * 4 2 1
6 6 C 1.38417 * 120.67370 * 147.22553 * 5 4 2
7 7 C 1.38295 * 119.87197 * 180.02562 * 6 5 4
8 8 C 1.38337 * 120.29137 * 0.02562 * 7 6 5
9 9 C 1.50696 * 119.89486 * 179.97438 * 8 7 6
10 10 O 1.42906 * 109.47042 * 90.00152 * 9 8 7
11 11 C 1.38216 * 120.21458 * 0.22752 * 8 7 6
12 12 C 1.38636 * 119.80561 * 359.48904 * 11 8 7
13 13 N 1.39943 * 120.74516 * 180.31300 * 12 11 8
14 14 C 1.37102 * 120.49412 * 15.68045 * 13 12 11
15 15 H 1.07998 * 119.99503 * 314.46213 * 14 13 12
16 16 C 1.38870 * 120.00072 * 134.46169 * 14 13 12
17 17 N 1.31442 * 119.99775 * 160.51395 * 16 14 13
18 18 Si 1.86798 * 120.00334 * 340.51162 * 16 14 13
19 19 H 1.48499 * 109.47133 * 95.24768 * 18 16 14
20 20 H 1.48497 * 109.46979 * 215.25034 * 18 16 14
21 21 H 1.48504 * 109.46746 * 335.25077 * 18 16 14
22 22 C 1.35077 * 119.01164 * 195.67885 * 13 12 11
23 23 O 1.21291 * 120.12650 * 181.73227 * 22 13 12
24 24 H 1.09000 * 109.46879 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.47655 * 299.93717 * 1 2 3
26 26 H 1.09001 * 109.47108 * 59.94252 * 1 2 3
27 27 H 1.07999 * 120.06465 * 0.04405 * 6 5 4
28 28 H 1.08003 * 119.85810 * 179.97438 * 7 6 5
29 29 H 1.08998 * 109.47573 * 329.99864 * 9 8 7
30 30 H 1.09002 * 109.47507 * 209.99711 * 9 8 7
31 31 H 0.96694 * 114.00065 * 180.02562 * 10 9 8
32 32 H 1.08005 * 120.09682 * 179.74491 * 11 8 7
33 33 H 0.96997 * 119.99897 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8928 1.0279 0.0000
4 8 2.0061 -0.6729 -1.1686
5 6 1.8881 -2.0270 -1.1842
6 6 1.6602 -2.7023 -2.3708
7 6 1.5423 -4.0802 -2.3674
8 6 1.6506 -4.7870 -1.1831
9 6 1.5201 -6.2882 -1.1897
10 8 2.8078 -6.8775 -1.3817
11 6 1.8729 -4.1201 0.0069
12 6 1.9980 -2.7394 0.0103
13 7 2.2298 -2.0450 1.2029
14 6 2.6525 -2.7104 2.3246
15 1 2.1770 -3.6356 2.6148
16 6 3.6920 -2.1947 3.0874
17 7 3.8521 -2.5879 4.3314
18 14 4.8629 -0.9423 2.3458
19 1 4.4072 0.4277 2.6931
20 1 6.2288 -1.1614 2.8855
21 1 4.8832 -1.0977 0.8691
22 6 2.0308 -0.7092 1.2325
23 8 2.2556 -0.0826 2.2463
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5128 0.8905
26 1 -0.3633 0.5147 -0.8895
27 1 1.5749 -2.1543 -3.2974
28 1 1.3641 -4.6069 -3.2934
29 1 0.8572 -6.5918 -1.9999
30 1 1.1066 -6.6213 -0.2378
31 1 2.7996 -7.8442 -1.3971
32 1 1.9530 -4.6734 0.9310
33 1 4.5784 -2.2281 4.8641
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000074331473.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:57:10
Heat of formation + Delta-G solvation = -102.407441 kcal
Electronic energy + Delta-G solvation = -20375.641508 eV
Core-core repulsion = 17173.286971 eV
Total energy + Delta-G solvation = -3202.354537 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.099 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-42.61342 -39.95333 -38.99224 -37.49277 -36.50003 -34.45204 -33.02235 -31.59055
-30.68058 -27.89929 -26.71066 -24.86355 -23.83287 -23.24997 -20.47179 -20.08110
-19.12076 -18.30070 -18.10257 -17.38636 -17.09461 -16.37392 -16.16673 -15.88975
-15.53773 -15.30771 -14.91763 -14.72010 -14.54232 -14.15192 -13.90714 -13.67646
-13.47561 -13.27531 -13.03510 -12.68579 -12.36308 -12.25351 -12.11403 -11.87985
-11.35930 -10.95057 -10.89069 -10.54383 -9.53991 -8.82962 -8.64291 -6.49176
0.12203 0.33053 1.03350 1.18871 1.24793 1.54873 2.00138 2.15653
2.44872 2.65946 2.82458 3.24093 3.65658 3.78905 3.82218 3.92117
4.16988 4.20350 4.39104 4.45826 4.59339 4.64359 4.68325 4.76344
4.96468 5.01011 5.17225 5.25574 5.50610 5.55147 5.66974 5.76947
6.13062 6.41320 6.55106 6.99683 7.01581 7.37333 8.41554
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.018122 B = 0.009662 C = 0.007187
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1544.693315 B = 2897.286553 C = 3895.204427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.080 3.920
3 H 0.157 0.843
4 O -0.307 6.307
5 C 0.052 3.948
6 C -0.107 4.107
7 C -0.094 4.094
8 C -0.098 4.098
9 C 0.124 3.876
10 O -0.590 6.590
11 C -0.113 4.113
12 C 0.071 3.929
13 N -0.414 5.414
14 C -0.364 4.364
15 H 0.082 0.918
16 C 0.059 3.941
17 N -0.888 5.888
18 Si 0.938 3.062
19 H -0.266 1.266
20 H -0.278 1.278
21 H -0.277 1.277
22 C 0.421 3.579
23 O -0.556 6.556
24 H 0.052 0.948
25 H 0.080 0.920
26 H 0.115 0.885
27 H 0.168 0.832
28 H 0.171 0.829
29 H 0.093 0.907
30 H 0.054 0.946
31 H 0.399 0.601
32 H 0.113 0.887
33 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.463 -3.628 -16.762 18.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.021 3.979
3 H 0.175 0.825
4 O -0.222 6.222
5 C 0.006 3.994
6 C -0.126 4.126
7 C -0.113 4.113
8 C -0.099 4.099
9 C 0.047 3.953
10 O -0.400 6.400
11 C -0.134 4.134
12 C -0.024 4.024
13 N -0.127 5.127
14 C -0.490 4.490
15 H 0.100 0.900
16 C -0.148 4.148
17 N -0.523 5.523
18 Si 0.765 3.235
19 H -0.192 1.192
20 H -0.205 1.205
21 H -0.202 1.202
22 C 0.213 3.787
23 O -0.438 6.438
24 H 0.071 0.929
25 H 0.099 0.901
26 H 0.133 0.867
27 H 0.186 0.814
28 H 0.189 0.811
29 H 0.111 0.889
30 H 0.072 0.928
31 H 0.249 0.751
32 H 0.131 0.869
33 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -6.983 -2.540 -16.110 17.741
hybrid contribution 0.634 -0.134 1.147 1.318
sum -6.349 -2.674 -14.963 16.473
Atomic orbital electron populations
1.22230 0.90398 1.03467 1.05512 1.23003 0.98251 0.97100 0.79555
0.82532 1.86141 1.79858 1.16476 1.39746 1.19083 1.04468 0.82553
0.93328 1.20797 1.01288 0.94577 0.95911 1.21174 0.99442 0.92502
0.98144 1.19809 1.01567 0.96255 0.92233 1.20980 0.85210 0.87515
1.01585 1.86549 1.30483 1.26649 1.96289 1.20683 1.01751 0.91489
0.99442 1.18978 1.03780 0.93844 0.85809 1.41544 1.56271 1.06320
1.08597 1.18675 1.18549 1.09781 1.01961 0.90049 1.25777 0.97280
0.97191 0.94558 1.69779 1.31355 1.44230 1.06976 0.85886 0.77732
0.81143 0.78777 1.19169 1.20464 1.20178 1.22342 0.80972 0.83679
0.91733 1.90560 1.52315 1.65594 1.35295 0.92880 0.90071 0.86676
0.81410 0.81142 0.88901 0.92780 0.75108 0.86946 0.90914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.56 9.30 71.98 0.67 -3.90 16
2 C 0.08 2.96 3.81 29.87 0.11 3.07 16
3 H 0.16 5.02 8.14 -2.38 -0.02 5.00 16
4 O -0.31 -11.28 10.18 -92.79 -0.94 -12.22 16
5 C 0.05 1.93 5.85 22.62 0.13 2.07 16
6 C -0.11 -2.95 10.00 22.33 0.22 -2.73 16
7 C -0.09 -2.33 9.69 22.31 0.22 -2.11 16
8 C -0.10 -2.96 5.51 -19.85 -0.11 -3.07 16
9 C 0.12 2.79 7.17 71.23 0.51 3.30 16
10 O -0.59 -14.35 13.64 -148.98 -2.03 -16.39 16
11 C -0.11 -4.56 9.00 22.36 0.20 -4.36 16
12 C 0.07 3.17 6.35 38.25 0.24 3.42 16
13 N -0.41 -21.87 2.33 -458.12 -1.07 -22.94 16
14 C -0.36 -21.85 8.87 84.02 0.75 -21.10 16
15 H 0.08 5.10 7.04 -2.91 -0.02 5.08 16
16 C 0.06 3.65 4.86 84.90 0.41 4.06 16
17 N -0.89 -55.84 13.96 21.65 0.30 -55.54 16
18 Si 0.94 51.51 25.01 68.60 1.72 53.22 16
19 H -0.27 -14.98 6.46 99.48 0.64 -14.33 16
20 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16
21 H -0.28 -15.16 7.11 99.48 0.71 -14.46 16
22 C 0.42 21.15 5.23 87.63 0.46 21.61 16
23 O -0.56 -31.79 13.08 -3.06 -0.04 -31.83 16
24 H 0.05 1.65 7.81 -2.39 -0.02 1.63 16
25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
26 H 0.11 2.39 8.14 -2.39 -0.02 2.38 16
27 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16
28 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16
29 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16
30 H 0.05 1.20 8.08 -2.39 -0.02 1.18 16
31 H 0.40 5.14 9.12 -74.06 -0.68 4.47 16
32 H 0.11 4.99 6.62 -2.91 -0.02 4.97 16
33 H 0.28 16.47 8.31 -92.71 -0.77 15.70 16
Total: -1.00 -79.96 280.10 2.16 -77.81
By element:
Atomic # 1 Polarization: 7.22 SS G_CDS: 0.41 Total: 7.63 kcal
Atomic # 6 Polarization: -3.56 SS G_CDS: 3.82 Total: 0.26 kcal
Atomic # 7 Polarization: -77.71 SS G_CDS: -0.77 Total: -78.48 kcal
Atomic # 8 Polarization: -57.42 SS G_CDS: -3.02 Total: -60.44 kcal
Atomic # 14 Polarization: 51.51 SS G_CDS: 1.72 Total: 53.22 kcal
Total: -79.96 2.16 -77.81 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000074331473.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.600 kcal
(2) G-P(sol) polarization free energy of solvation -79.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.564 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.807 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds