Wall clock time and date at job start Mon Mar 30 2020 04:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.44236 * 2 1 4 4 O 1.43004 * 109.44701 * 240.06397 * 2 1 3 5 5 C 1.35932 * 116.69526 * 286.29585 * 4 2 1 6 6 C 1.38417 * 120.67370 * 147.22553 * 5 4 2 7 7 C 1.38295 * 119.87197 * 180.02562 * 6 5 4 8 8 C 1.38337 * 120.29137 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.89486 * 179.97438 * 8 7 6 10 10 O 1.42906 * 109.47042 * 90.00152 * 9 8 7 11 11 C 1.38216 * 120.21458 * 0.22752 * 8 7 6 12 12 C 1.38636 * 119.80561 * 359.48904 * 11 8 7 13 13 N 1.39943 * 120.74516 * 180.31300 * 12 11 8 14 14 C 1.37102 * 120.49412 * 15.68045 * 13 12 11 15 15 H 1.07998 * 119.99503 * 314.46213 * 14 13 12 16 16 C 1.38870 * 120.00072 * 134.46169 * 14 13 12 17 17 N 1.31442 * 119.99775 * 160.51395 * 16 14 13 18 18 Si 1.86798 * 120.00334 * 340.51162 * 16 14 13 19 19 H 1.48499 * 109.47133 * 95.24768 * 18 16 14 20 20 H 1.48497 * 109.46979 * 215.25034 * 18 16 14 21 21 H 1.48504 * 109.46746 * 335.25077 * 18 16 14 22 22 C 1.35077 * 119.01164 * 195.67885 * 13 12 11 23 23 O 1.21291 * 120.12650 * 181.73227 * 22 13 12 24 24 H 1.09000 * 109.46879 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47655 * 299.93717 * 1 2 3 26 26 H 1.09001 * 109.47108 * 59.94252 * 1 2 3 27 27 H 1.07999 * 120.06465 * 0.04405 * 6 5 4 28 28 H 1.08003 * 119.85810 * 179.97438 * 7 6 5 29 29 H 1.08998 * 109.47573 * 329.99864 * 9 8 7 30 30 H 1.09002 * 109.47507 * 209.99711 * 9 8 7 31 31 H 0.96694 * 114.00065 * 180.02562 * 10 9 8 32 32 H 1.08005 * 120.09682 * 179.74491 * 11 8 7 33 33 H 0.96997 * 119.99897 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0061 -0.6729 -1.1686 5 6 1.8881 -2.0270 -1.1842 6 6 1.6602 -2.7023 -2.3708 7 6 1.5423 -4.0802 -2.3674 8 6 1.6506 -4.7870 -1.1831 9 6 1.5201 -6.2882 -1.1897 10 8 2.8078 -6.8775 -1.3817 11 6 1.8729 -4.1201 0.0069 12 6 1.9980 -2.7394 0.0103 13 7 2.2298 -2.0450 1.2029 14 6 2.6525 -2.7104 2.3246 15 1 2.1770 -3.6356 2.6148 16 6 3.6920 -2.1947 3.0874 17 7 3.8521 -2.5879 4.3314 18 14 4.8629 -0.9423 2.3458 19 1 4.4072 0.4277 2.6931 20 1 6.2288 -1.1614 2.8855 21 1 4.8832 -1.0977 0.8691 22 6 2.0308 -0.7092 1.2325 23 8 2.2556 -0.0826 2.2463 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5128 0.8905 26 1 -0.3633 0.5147 -0.8895 27 1 1.5749 -2.1543 -3.2974 28 1 1.3641 -4.6069 -3.2934 29 1 0.8572 -6.5918 -1.9999 30 1 1.1066 -6.6213 -0.2378 31 1 2.7996 -7.8442 -1.3971 32 1 1.9530 -4.6734 0.9310 33 1 4.5784 -2.2281 4.8641 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074331473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:10 Heat of formation + Delta-G solvation = -102.407441 kcal Electronic energy + Delta-G solvation = -20375.641508 eV Core-core repulsion = 17173.286971 eV Total energy + Delta-G solvation = -3202.354537 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.61342 -39.95333 -38.99224 -37.49277 -36.50003 -34.45204 -33.02235 -31.59055 -30.68058 -27.89929 -26.71066 -24.86355 -23.83287 -23.24997 -20.47179 -20.08110 -19.12076 -18.30070 -18.10257 -17.38636 -17.09461 -16.37392 -16.16673 -15.88975 -15.53773 -15.30771 -14.91763 -14.72010 -14.54232 -14.15192 -13.90714 -13.67646 -13.47561 -13.27531 -13.03510 -12.68579 -12.36308 -12.25351 -12.11403 -11.87985 -11.35930 -10.95057 -10.89069 -10.54383 -9.53991 -8.82962 -8.64291 -6.49176 0.12203 0.33053 1.03350 1.18871 1.24793 1.54873 2.00138 2.15653 2.44872 2.65946 2.82458 3.24093 3.65658 3.78905 3.82218 3.92117 4.16988 4.20350 4.39104 4.45826 4.59339 4.64359 4.68325 4.76344 4.96468 5.01011 5.17225 5.25574 5.50610 5.55147 5.66974 5.76947 6.13062 6.41320 6.55106 6.99683 7.01581 7.37333 8.41554 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.009662 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.693315 B = 2897.286553 C = 3895.204427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.080 3.920 3 H 0.157 0.843 4 O -0.307 6.307 5 C 0.052 3.948 6 C -0.107 4.107 7 C -0.094 4.094 8 C -0.098 4.098 9 C 0.124 3.876 10 O -0.590 6.590 11 C -0.113 4.113 12 C 0.071 3.929 13 N -0.414 5.414 14 C -0.364 4.364 15 H 0.082 0.918 16 C 0.059 3.941 17 N -0.888 5.888 18 Si 0.938 3.062 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.277 1.277 22 C 0.421 3.579 23 O -0.556 6.556 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.399 0.601 32 H 0.113 0.887 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -3.628 -16.762 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 H 0.175 0.825 4 O -0.222 6.222 5 C 0.006 3.994 6 C -0.126 4.126 7 C -0.113 4.113 8 C -0.099 4.099 9 C 0.047 3.953 10 O -0.400 6.400 11 C -0.134 4.134 12 C -0.024 4.024 13 N -0.127 5.127 14 C -0.490 4.490 15 H 0.100 0.900 16 C -0.148 4.148 17 N -0.523 5.523 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.202 1.202 22 C 0.213 3.787 23 O -0.438 6.438 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.133 0.867 27 H 0.186 0.814 28 H 0.189 0.811 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.249 0.751 32 H 0.131 0.869 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.983 -2.540 -16.110 17.741 hybrid contribution 0.634 -0.134 1.147 1.318 sum -6.349 -2.674 -14.963 16.473 Atomic orbital electron populations 1.22230 0.90398 1.03467 1.05512 1.23003 0.98251 0.97100 0.79555 0.82532 1.86141 1.79858 1.16476 1.39746 1.19083 1.04468 0.82553 0.93328 1.20797 1.01288 0.94577 0.95911 1.21174 0.99442 0.92502 0.98144 1.19809 1.01567 0.96255 0.92233 1.20980 0.85210 0.87515 1.01585 1.86549 1.30483 1.26649 1.96289 1.20683 1.01751 0.91489 0.99442 1.18978 1.03780 0.93844 0.85809 1.41544 1.56271 1.06320 1.08597 1.18675 1.18549 1.09781 1.01961 0.90049 1.25777 0.97280 0.97191 0.94558 1.69779 1.31355 1.44230 1.06976 0.85886 0.77732 0.81143 0.78777 1.19169 1.20464 1.20178 1.22342 0.80972 0.83679 0.91733 1.90560 1.52315 1.65594 1.35295 0.92880 0.90071 0.86676 0.81410 0.81142 0.88901 0.92780 0.75108 0.86946 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 9.30 71.98 0.67 -3.90 16 2 C 0.08 2.96 3.81 29.87 0.11 3.07 16 3 H 0.16 5.02 8.14 -2.38 -0.02 5.00 16 4 O -0.31 -11.28 10.18 -92.79 -0.94 -12.22 16 5 C 0.05 1.93 5.85 22.62 0.13 2.07 16 6 C -0.11 -2.95 10.00 22.33 0.22 -2.73 16 7 C -0.09 -2.33 9.69 22.31 0.22 -2.11 16 8 C -0.10 -2.96 5.51 -19.85 -0.11 -3.07 16 9 C 0.12 2.79 7.17 71.23 0.51 3.30 16 10 O -0.59 -14.35 13.64 -148.98 -2.03 -16.39 16 11 C -0.11 -4.56 9.00 22.36 0.20 -4.36 16 12 C 0.07 3.17 6.35 38.25 0.24 3.42 16 13 N -0.41 -21.87 2.33 -458.12 -1.07 -22.94 16 14 C -0.36 -21.85 8.87 84.02 0.75 -21.10 16 15 H 0.08 5.10 7.04 -2.91 -0.02 5.08 16 16 C 0.06 3.65 4.86 84.90 0.41 4.06 16 17 N -0.89 -55.84 13.96 21.65 0.30 -55.54 16 18 Si 0.94 51.51 25.01 68.60 1.72 53.22 16 19 H -0.27 -14.98 6.46 99.48 0.64 -14.33 16 20 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.28 -15.16 7.11 99.48 0.71 -14.46 16 22 C 0.42 21.15 5.23 87.63 0.46 21.61 16 23 O -0.56 -31.79 13.08 -3.06 -0.04 -31.83 16 24 H 0.05 1.65 7.81 -2.39 -0.02 1.63 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.11 2.39 8.14 -2.39 -0.02 2.38 16 27 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 30 H 0.05 1.20 8.08 -2.39 -0.02 1.18 16 31 H 0.40 5.14 9.12 -74.06 -0.68 4.47 16 32 H 0.11 4.99 6.62 -2.91 -0.02 4.97 16 33 H 0.28 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -79.96 280.10 2.16 -77.81 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.41 Total: 7.63 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 3.82 Total: 0.26 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -0.77 Total: -78.48 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -3.02 Total: -60.44 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 1.72 Total: 53.22 kcal Total: -79.96 2.16 -77.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074331473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.600 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds