Wall clock time and date at job start Mon Mar 30 2020 05:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00149 * 2 1 4 4 O 1.21789 * 120.00061 * 185.30623 * 3 2 1 5 5 C 1.41708 * 119.99882 * 5.30086 * 3 2 1 6 6 H 1.07997 * 119.99422 * 359.97438 * 5 3 2 7 7 C 1.40132 * 119.99726 * 180.02562 * 5 3 2 8 8 N 1.30623 * 120.00353 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99854 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47059 * 59.99535 * 9 7 5 11 11 H 1.48491 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46967 * 299.99821 * 9 7 5 13 13 C 1.39448 * 119.99852 * 180.02562 * 2 1 3 14 14 C 1.39179 * 120.02803 * 294.67349 * 13 2 1 15 15 C 1.37979 * 120.02538 * 179.77447 * 14 13 2 16 16 C 1.38884 * 120.17335 * 0.24622 * 15 14 13 17 17 C 1.39227 * 119.95119 * 359.94864 * 16 15 14 18 18 C 1.38505 * 119.89817 * 0.11221 * 17 16 15 19 19 O 1.36098 * 120.76158 * 180.20111 * 17 16 15 20 20 C 1.43177 * 116.69828 * 342.72787 * 19 17 16 21 21 C 1.53465 * 108.23912 * 46.28538 * 20 19 17 22 22 O 1.36113 * 119.32132 * 179.81392 * 16 15 14 23 23 H 1.09003 * 109.47258 * 270.00047 * 1 2 3 24 24 H 1.09001 * 109.47329 * 29.99999 * 1 2 3 25 25 H 1.08999 * 109.47222 * 150.00094 * 1 2 3 26 26 H 0.97001 * 120.00236 * 180.02562 * 8 7 5 27 27 H 1.07996 * 119.98723 * 0.05278 * 14 13 2 28 28 H 1.08001 * 119.91066 * 180.27009 * 15 14 13 29 29 H 1.07995 * 119.99272 * 179.88200 * 18 17 16 30 30 H 1.08994 * 109.71116 * 286.59864 * 20 19 17 31 31 H 1.09002 * 109.70728 * 165.96485 * 20 19 17 32 32 H 1.08993 * 109.70878 * 180.48452 * 21 20 19 33 33 H 1.09004 * 109.74162 * 59.88128 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1694 -0.0975 5 6 1.4349 2.3918 0.1134 6 1 0.3584 2.3897 0.1994 7 6 2.1356 3.6054 0.1128 8 7 3.4376 3.6078 0.0083 9 14 1.2077 5.2197 0.2630 10 1 0.4547 5.2406 1.5428 11 1 2.1715 6.3489 0.2366 12 1 0.2589 5.3526 -0.8717 13 6 2.1622 -1.2077 -0.0005 14 6 2.0748 -2.0628 1.0941 15 6 2.7609 -3.2599 1.0915 16 6 3.5443 -3.6131 0.0005 17 6 3.6372 -2.7582 -1.0945 18 6 2.9496 -1.5559 -1.0919 19 8 4.3968 -3.0897 -2.1740 20 6 5.3667 -4.1257 -1.9844 21 6 4.6911 -5.2860 -1.2411 22 8 4.2168 -4.7964 0.0179 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 3.9226 4.4478 0.0083 27 1 1.4661 -1.7914 1.9438 28 1 2.6883 -3.9241 1.9400 29 1 3.0221 -0.8907 -1.9395 30 1 6.1997 -3.7457 -1.3931 31 1 5.7296 -4.4711 -2.9525 32 1 5.4122 -6.0864 -1.0762 33 1 3.8532 -5.6614 -1.8286 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077362509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:55 Heat of formation + Delta-G solvation = -68.614772 kcal Electronic energy + Delta-G solvation = -19647.987608 eV Core-core repulsion = 16447.098431 eV Total energy + Delta-G solvation = -3200.889177 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89189 -38.66929 -36.95454 -36.44070 -33.79657 -32.51314 -30.71760 -30.02328 -28.08955 -26.38813 -25.60134 -24.08390 -22.51245 -21.05894 -19.49544 -18.24331 -17.05651 -16.85951 -16.42678 -15.71534 -15.13494 -15.03801 -14.65040 -14.20024 -14.15549 -14.06613 -13.41146 -13.10188 -12.89440 -12.62360 -12.06395 -11.63791 -11.51082 -11.42505 -11.27267 -10.97140 -10.90874 -10.73848 -10.34688 -10.23811 -10.20650 -8.93119 -8.21814 -7.87205 -7.63120 -7.09633 -6.28676 -4.81537 1.75384 1.81264 3.10821 3.16152 3.17903 3.26903 3.42995 4.02924 4.16625 4.36152 4.47524 4.51818 4.86215 4.92974 4.98634 5.26981 5.49456 5.61384 5.68560 5.77944 5.90085 5.97032 6.20807 6.38930 6.41619 6.48779 6.60209 6.85088 7.12193 7.19451 7.32919 7.67181 7.76984 8.08927 8.41938 8.89551 9.34518 10.48061 10.70895 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.037211 B = 0.005045 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.291921 B = 5548.565146 C = 5947.786020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.609 5.609 3 C 0.553 3.447 4 O -0.570 6.570 5 C -0.540 4.540 6 H 0.073 0.927 7 C 0.088 3.912 8 N -0.751 5.751 9 Si 0.910 3.090 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.266 1.266 13 C 0.195 3.805 14 C -0.133 4.133 15 C -0.105 4.105 16 C 0.022 3.978 17 C 0.058 3.942 18 C -0.104 4.104 19 O -0.308 6.308 20 C 0.021 3.979 21 C 0.023 3.977 22 O -0.312 6.312 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.271 0.729 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -13.361 -1.677 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.343 5.343 3 C 0.363 3.637 4 O -0.452 6.452 5 C -0.575 4.575 6 H 0.091 0.909 7 C -0.134 4.134 8 N -0.379 5.379 9 Si 0.734 3.266 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.191 1.191 13 C 0.101 3.899 14 C -0.154 4.154 15 C -0.125 4.125 16 C -0.023 4.023 17 C 0.013 3.987 18 C -0.125 4.125 19 O -0.223 6.223 20 C -0.055 4.055 21 C -0.053 4.053 22 O -0.227 6.227 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.857 -13.215 -1.772 13.360 hybrid contribution -0.318 0.660 -0.004 0.733 sum -1.175 -12.555 -1.777 12.734 Atomic orbital electron populations 1.21466 0.80753 1.01530 1.00203 1.45882 1.05489 1.03566 1.79388 1.17048 0.87215 0.81667 0.77782 1.90683 1.13998 1.85595 1.54969 1.20098 0.94745 0.89964 1.52702 0.90866 1.25784 0.94573 1.00572 0.92491 1.70017 1.07390 1.27701 1.32758 0.86389 0.79867 0.80654 0.79656 1.19073 1.20448 1.19081 1.17351 0.93891 0.87449 0.91182 1.21110 1.01871 0.94514 0.97871 1.20121 0.97188 0.97825 0.97328 1.18816 0.99912 0.86659 0.96884 1.18692 0.97175 0.94730 0.88116 1.20632 0.99469 0.92816 0.99623 1.86308 1.48487 1.54496 1.33026 1.23548 0.90968 0.88048 1.02951 1.23515 0.99826 0.96653 0.85321 1.86243 1.70555 1.35269 1.30649 0.94439 0.90487 0.93607 0.91759 0.85345 0.85270 0.84961 0.90727 0.86603 0.86692 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 9.86 59.84 0.59 2.51 16 2 N -0.61 -14.34 2.92 -124.02 -0.36 -14.71 16 3 C 0.55 15.86 7.32 -14.93 -0.11 15.75 16 4 O -0.57 -18.65 14.34 5.11 0.07 -18.58 16 5 C -0.54 -14.91 8.53 -37.55 -0.32 -15.23 16 6 H 0.07 1.82 6.03 -52.49 -0.32 1.50 16 7 C 0.09 2.41 5.50 -17.36 -0.10 2.32 16 8 N -0.75 -22.20 11.73 55.55 0.65 -21.55 16 9 Si 0.91 19.59 29.56 -169.99 -5.02 14.56 16 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 13 C 0.19 4.29 4.89 -83.76 -0.41 3.88 16 14 C -0.13 -2.50 9.82 -39.33 -0.39 -2.89 16 15 C -0.11 -1.80 9.95 -39.44 -0.39 -2.19 16 16 C 0.02 0.39 6.51 -38.98 -0.25 0.13 16 17 C 0.06 1.13 6.49 -39.12 -0.25 0.88 16 18 C -0.10 -2.30 9.09 -39.20 -0.36 -2.66 16 19 O -0.31 -5.42 10.42 -32.78 -0.34 -5.76 16 20 C 0.02 0.25 7.26 37.40 0.27 0.53 16 21 C 0.02 0.25 7.26 37.40 0.27 0.53 16 22 O -0.31 -4.81 10.42 -32.82 -0.34 -5.15 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.43 6.33 -51.93 -0.33 1.10 16 25 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 26 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 27 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 28 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.13 3.12 8.06 -52.49 -0.42 2.70 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 286.75 15.07 4.32 4.32 Total: -1.00 -35.34 286.75 -6.05 -41.39 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.58 Total: 1.93 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.44 Total: 3.55 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.29 Total: -36.26 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.61 Total: -29.49 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.34 -6.05 -41.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077362509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.225 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds