Wall clock time and date at job start Mon Mar 30 2020 05:11:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.34778 * 120.00149 * 2 1
4 4 O 1.21789 * 120.00061 * 185.30623 * 3 2 1
5 5 C 1.41708 * 119.99882 * 5.30086 * 3 2 1
6 6 H 1.07997 * 119.99422 * 359.97438 * 5 3 2
7 7 C 1.40132 * 119.99726 * 180.02562 * 5 3 2
8 8 N 1.30623 * 120.00353 * 359.97438 * 7 5 3
9 9 Si 1.86803 * 119.99854 * 180.02562 * 7 5 3
10 10 H 1.48505 * 109.47059 * 59.99535 * 9 7 5
11 11 H 1.48491 * 109.47230 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.46967 * 299.99821 * 9 7 5
13 13 C 1.39448 * 119.99852 * 180.02562 * 2 1 3
14 14 C 1.39179 * 120.02803 * 294.67349 * 13 2 1
15 15 C 1.37979 * 120.02538 * 179.77447 * 14 13 2
16 16 C 1.38884 * 120.17335 * 0.24622 * 15 14 13
17 17 C 1.39227 * 119.95119 * 359.94864 * 16 15 14
18 18 C 1.38505 * 119.89817 * 0.11221 * 17 16 15
19 19 O 1.36098 * 120.76158 * 180.20111 * 17 16 15
20 20 C 1.43177 * 116.69828 * 342.72787 * 19 17 16
21 21 C 1.53465 * 108.23912 * 46.28538 * 20 19 17
22 22 O 1.36113 * 119.32132 * 179.81392 * 16 15 14
23 23 H 1.09003 * 109.47258 * 270.00047 * 1 2 3
24 24 H 1.09001 * 109.47329 * 29.99999 * 1 2 3
25 25 H 1.08999 * 109.47222 * 150.00094 * 1 2 3
26 26 H 0.97001 * 120.00236 * 180.02562 * 8 7 5
27 27 H 1.07996 * 119.98723 * 0.05278 * 14 13 2
28 28 H 1.08001 * 119.91066 * 180.27009 * 15 14 13
29 29 H 1.07995 * 119.99272 * 179.88200 * 18 17 16
30 30 H 1.08994 * 109.71116 * 286.59864 * 20 19 17
31 31 H 1.09002 * 109.70728 * 165.96485 * 20 19 17
32 32 H 1.08993 * 109.70878 * 180.48452 * 21 20 19
33 33 H 1.09004 * 109.74162 * 59.88128 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3529 1.1694 -0.0975
5 6 1.4349 2.3918 0.1134
6 1 0.3584 2.3897 0.1994
7 6 2.1356 3.6054 0.1128
8 7 3.4376 3.6078 0.0083
9 14 1.2077 5.2197 0.2630
10 1 0.4547 5.2406 1.5428
11 1 2.1715 6.3489 0.2366
12 1 0.2589 5.3526 -0.8717
13 6 2.1622 -1.2077 -0.0005
14 6 2.0748 -2.0628 1.0941
15 6 2.7609 -3.2599 1.0915
16 6 3.5443 -3.6131 0.0005
17 6 3.6372 -2.7582 -1.0945
18 6 2.9496 -1.5559 -1.0919
19 8 4.3968 -3.0897 -2.1740
20 6 5.3667 -4.1257 -1.9844
21 6 4.6911 -5.2860 -1.2411
22 8 4.2168 -4.7964 0.0179
23 1 -0.3634 0.0000 1.0277
24 1 -0.3634 0.8900 -0.5138
25 1 -0.3633 -0.8900 -0.5138
26 1 3.9226 4.4478 0.0083
27 1 1.4661 -1.7914 1.9438
28 1 2.6883 -3.9241 1.9400
29 1 3.0221 -0.8907 -1.9395
30 1 6.1997 -3.7457 -1.3931
31 1 5.7296 -4.4711 -2.9525
32 1 5.4122 -6.0864 -1.0762
33 1 3.8532 -5.6614 -1.8286
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000077362509.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:11:55
Heat of formation + Delta-G solvation = -68.614772 kcal
Electronic energy + Delta-G solvation = -19647.987608 eV
Core-core repulsion = 16447.098431 eV
Total energy + Delta-G solvation = -3200.889177 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.099 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.89189 -38.66929 -36.95454 -36.44070 -33.79657 -32.51314 -30.71760 -30.02328
-28.08955 -26.38813 -25.60134 -24.08390 -22.51245 -21.05894 -19.49544 -18.24331
-17.05651 -16.85951 -16.42678 -15.71534 -15.13494 -15.03801 -14.65040 -14.20024
-14.15549 -14.06613 -13.41146 -13.10188 -12.89440 -12.62360 -12.06395 -11.63791
-11.51082 -11.42505 -11.27267 -10.97140 -10.90874 -10.73848 -10.34688 -10.23811
-10.20650 -8.93119 -8.21814 -7.87205 -7.63120 -7.09633 -6.28676 -4.81537
1.75384 1.81264 3.10821 3.16152 3.17903 3.26903 3.42995 4.02924
4.16625 4.36152 4.47524 4.51818 4.86215 4.92974 4.98634 5.26981
5.49456 5.61384 5.68560 5.77944 5.90085 5.97032 6.20807 6.38930
6.41619 6.48779 6.60209 6.85088 7.12193 7.19451 7.32919 7.67181
7.76984 8.08927 8.41938 8.89551 9.34518 10.48061 10.70895
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.037211 B = 0.005045 C = 0.004707
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 752.291921 B = 5548.565146 C = 5947.786020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.104 3.896
2 N -0.609 5.609
3 C 0.553 3.447
4 O -0.570 6.570
5 C -0.540 4.540
6 H 0.073 0.927
7 C 0.088 3.912
8 N -0.751 5.751
9 Si 0.910 3.090
10 H -0.266 1.266
11 H -0.279 1.279
12 H -0.266 1.266
13 C 0.195 3.805
14 C -0.133 4.133
15 C -0.105 4.105
16 C 0.022 3.978
17 C 0.058 3.942
18 C -0.104 4.104
19 O -0.308 6.308
20 C 0.021 3.979
21 C 0.023 3.977
22 O -0.312 6.312
23 H 0.037 0.963
24 H 0.077 0.923
25 H 0.045 0.955
26 H 0.271 0.729
27 H 0.129 0.871
28 H 0.129 0.871
29 H 0.132 0.868
30 H 0.075 0.925
31 H 0.116 0.884
32 H 0.115 0.885
33 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.719 -13.361 -1.677 13.575
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.040 4.040
2 N -0.343 5.343
3 C 0.363 3.637
4 O -0.452 6.452
5 C -0.575 4.575
6 H 0.091 0.909
7 C -0.134 4.134
8 N -0.379 5.379
9 Si 0.734 3.266
10 H -0.191 1.191
11 H -0.204 1.204
12 H -0.191 1.191
13 C 0.101 3.899
14 C -0.154 4.154
15 C -0.125 4.125
16 C -0.023 4.023
17 C 0.013 3.987
18 C -0.125 4.125
19 O -0.223 6.223
20 C -0.055 4.055
21 C -0.053 4.053
22 O -0.227 6.227
23 H 0.056 0.944
24 H 0.095 0.905
25 H 0.064 0.936
26 H 0.082 0.918
27 H 0.147 0.853
28 H 0.147 0.853
29 H 0.150 0.850
30 H 0.093 0.907
31 H 0.134 0.866
32 H 0.133 0.867
33 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -0.857 -13.215 -1.772 13.360
hybrid contribution -0.318 0.660 -0.004 0.733
sum -1.175 -12.555 -1.777 12.734
Atomic orbital electron populations
1.21466 0.80753 1.01530 1.00203 1.45882 1.05489 1.03566 1.79388
1.17048 0.87215 0.81667 0.77782 1.90683 1.13998 1.85595 1.54969
1.20098 0.94745 0.89964 1.52702 0.90866 1.25784 0.94573 1.00572
0.92491 1.70017 1.07390 1.27701 1.32758 0.86389 0.79867 0.80654
0.79656 1.19073 1.20448 1.19081 1.17351 0.93891 0.87449 0.91182
1.21110 1.01871 0.94514 0.97871 1.20121 0.97188 0.97825 0.97328
1.18816 0.99912 0.86659 0.96884 1.18692 0.97175 0.94730 0.88116
1.20632 0.99469 0.92816 0.99623 1.86308 1.48487 1.54496 1.33026
1.23548 0.90968 0.88048 1.02951 1.23515 0.99826 0.96653 0.85321
1.86243 1.70555 1.35269 1.30649 0.94439 0.90487 0.93607 0.91759
0.85345 0.85270 0.84961 0.90727 0.86603 0.86692 0.90957
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.92 9.86 59.84 0.59 2.51 16
2 N -0.61 -14.34 2.92 -124.02 -0.36 -14.71 16
3 C 0.55 15.86 7.32 -14.93 -0.11 15.75 16
4 O -0.57 -18.65 14.34 5.11 0.07 -18.58 16
5 C -0.54 -14.91 8.53 -37.55 -0.32 -15.23 16
6 H 0.07 1.82 6.03 -52.49 -0.32 1.50 16
7 C 0.09 2.41 5.50 -17.36 -0.10 2.32 16
8 N -0.75 -22.20 11.73 55.55 0.65 -21.55 16
9 Si 0.91 19.59 29.56 -169.99 -5.02 14.56 16
10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16
11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
13 C 0.19 4.29 4.89 -83.76 -0.41 3.88 16
14 C -0.13 -2.50 9.82 -39.33 -0.39 -2.89 16
15 C -0.11 -1.80 9.95 -39.44 -0.39 -2.19 16
16 C 0.02 0.39 6.51 -38.98 -0.25 0.13 16
17 C 0.06 1.13 6.49 -39.12 -0.25 0.88 16
18 C -0.10 -2.30 9.09 -39.20 -0.36 -2.66 16
19 O -0.31 -5.42 10.42 -32.78 -0.34 -5.76 16
20 C 0.02 0.25 7.26 37.40 0.27 0.53 16
21 C 0.02 0.25 7.26 37.40 0.27 0.53 16
22 O -0.31 -4.81 10.42 -32.82 -0.34 -5.15 16
23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.08 1.43 6.33 -51.93 -0.33 1.10 16
25 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16
26 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16
27 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16
28 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16
29 H 0.13 3.12 8.06 -52.49 -0.42 2.70 16
30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
31 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16
32 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
LS Contribution 286.75 15.07 4.32 4.32
Total: -1.00 -35.34 286.75 -6.05 -41.39
By element:
Atomic # 1 Polarization: 5.51 SS G_CDS: -3.58 Total: 1.93 kcal
Atomic # 6 Polarization: 4.99 SS G_CDS: -1.44 Total: 3.55 kcal
Atomic # 7 Polarization: -36.55 SS G_CDS: 0.29 Total: -36.26 kcal
Atomic # 8 Polarization: -28.88 SS G_CDS: -0.61 Total: -29.49 kcal
Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -35.34 -6.05 -41.39 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000077362509.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.225 kcal
(2) G-P(sol) polarization free energy of solvation -35.343 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.567 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.615 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds