Wall clock time and date at job start Mon Mar 30 2020 05:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00149 * 2 1 4 4 O 1.21789 * 120.00061 * 185.30623 * 3 2 1 5 5 C 1.41708 * 119.99882 * 5.30086 * 3 2 1 6 6 H 1.07997 * 119.99422 * 359.97438 * 5 3 2 7 7 C 1.40132 * 119.99726 * 180.02562 * 5 3 2 8 8 N 1.30623 * 120.00353 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99854 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47059 * 59.99535 * 9 7 5 11 11 H 1.48491 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46967 * 299.99821 * 9 7 5 13 13 C 1.39448 * 119.99852 * 180.02562 * 2 1 3 14 14 C 1.39179 * 120.02803 * 294.67349 * 13 2 1 15 15 C 1.37979 * 120.02538 * 179.77447 * 14 13 2 16 16 C 1.38884 * 120.17335 * 0.24622 * 15 14 13 17 17 C 1.39227 * 119.95119 * 359.94864 * 16 15 14 18 18 C 1.38505 * 119.89817 * 0.11221 * 17 16 15 19 19 O 1.36098 * 120.76158 * 180.20111 * 17 16 15 20 20 C 1.43177 * 116.69828 * 342.72787 * 19 17 16 21 21 C 1.53465 * 108.23912 * 46.28538 * 20 19 17 22 22 O 1.36113 * 119.32132 * 179.81392 * 16 15 14 23 23 H 1.09003 * 109.47258 * 270.00047 * 1 2 3 24 24 H 1.09001 * 109.47329 * 29.99999 * 1 2 3 25 25 H 1.08999 * 109.47222 * 150.00094 * 1 2 3 26 26 H 0.97001 * 120.00236 * 180.02562 * 8 7 5 27 27 H 1.07996 * 119.98723 * 0.05278 * 14 13 2 28 28 H 1.08001 * 119.91066 * 180.27009 * 15 14 13 29 29 H 1.07995 * 119.99272 * 179.88200 * 18 17 16 30 30 H 1.08994 * 109.71116 * 286.59864 * 20 19 17 31 31 H 1.09002 * 109.70728 * 165.96485 * 20 19 17 32 32 H 1.08993 * 109.70878 * 180.48452 * 21 20 19 33 33 H 1.09004 * 109.74162 * 59.88128 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1694 -0.0975 5 6 1.4349 2.3918 0.1134 6 1 0.3584 2.3897 0.1994 7 6 2.1356 3.6054 0.1128 8 7 3.4376 3.6078 0.0083 9 14 1.2077 5.2197 0.2630 10 1 0.4547 5.2406 1.5428 11 1 2.1715 6.3489 0.2366 12 1 0.2589 5.3526 -0.8717 13 6 2.1622 -1.2077 -0.0005 14 6 2.0748 -2.0628 1.0941 15 6 2.7609 -3.2599 1.0915 16 6 3.5443 -3.6131 0.0005 17 6 3.6372 -2.7582 -1.0945 18 6 2.9496 -1.5559 -1.0919 19 8 4.3968 -3.0897 -2.1740 20 6 5.3667 -4.1257 -1.9844 21 6 4.6911 -5.2860 -1.2411 22 8 4.2168 -4.7964 0.0179 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 3.9226 4.4478 0.0083 27 1 1.4661 -1.7914 1.9438 28 1 2.6883 -3.9241 1.9400 29 1 3.0221 -0.8907 -1.9395 30 1 6.1997 -3.7457 -1.3931 31 1 5.7296 -4.4711 -2.9525 32 1 5.4122 -6.0864 -1.0762 33 1 3.8532 -5.6614 -1.8286 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077362509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:55 Heat of formation + Delta-G solvation = -93.737040 kcal Electronic energy + Delta-G solvation = -19649.076992 eV Core-core repulsion = 16447.098431 eV Total energy + Delta-G solvation = -3201.978560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.19647 -40.41100 -38.23962 -38.13048 -35.61400 -34.63826 -31.94169 -31.49591 -29.57915 -28.29552 -27.15431 -25.39710 -24.06874 -22.61121 -21.04667 -19.58834 -18.61734 -18.22551 -18.13831 -17.66917 -16.68758 -16.41932 -15.90385 -15.86755 -15.64068 -15.35555 -14.86679 -14.67915 -14.42673 -14.15078 -13.56397 -13.41051 -13.14800 -13.05347 -12.83840 -12.67571 -12.36018 -12.07433 -12.03396 -11.94279 -11.47712 -10.94081 -9.87208 -9.75925 -9.41966 -8.74389 -8.33391 -6.97355 0.26936 0.31034 1.40488 1.43393 1.56119 2.02988 2.21161 2.28173 2.41550 2.68772 2.86050 3.31815 3.63784 3.68441 3.96692 4.07535 4.23323 4.26278 4.41454 4.47807 4.56197 4.59530 4.77899 4.86496 4.96413 4.99124 5.12390 5.29569 5.46013 5.55035 5.82392 5.92370 6.07637 6.39717 6.61049 6.78929 7.36653 8.44015 8.63672 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.037211 B = 0.005045 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.291921 B = 5548.565146 C = 5947.786020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.613 5.613 3 C 0.536 3.464 4 O -0.628 6.628 5 C -0.563 4.563 6 H 0.098 0.902 7 C 0.030 3.970 8 N -0.808 5.808 9 Si 1.001 2.999 10 H -0.250 1.250 11 H -0.275 1.275 12 H -0.252 1.252 13 C 0.162 3.838 14 C -0.131 4.131 15 C -0.095 4.095 16 C 0.029 3.971 17 C 0.053 3.947 18 C -0.135 4.135 19 O -0.332 6.332 20 C 0.009 3.991 21 C 0.019 3.981 22 O -0.315 6.315 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.277 0.723 27 H 0.148 0.852 28 H 0.167 0.833 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -14.863 -0.825 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.345 5.345 3 C 0.346 3.654 4 O -0.515 6.515 5 C -0.598 4.598 6 H 0.116 0.884 7 C -0.188 4.188 8 N -0.436 5.436 9 Si 0.819 3.181 10 H -0.174 1.174 11 H -0.200 1.200 12 H -0.175 1.175 13 C 0.069 3.931 14 C -0.151 4.151 15 C -0.114 4.114 16 C -0.016 4.016 17 C 0.007 3.993 18 C -0.156 4.156 19 O -0.247 6.247 20 C -0.066 4.066 21 C -0.056 4.056 22 O -0.230 6.230 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.166 0.834 28 H 0.185 0.815 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.089 -14.787 -0.927 14.963 hybrid contribution 0.154 0.897 -0.348 0.975 sum -1.935 -13.890 -1.276 14.082 Atomic orbital electron populations 1.21673 0.77961 1.02657 1.01849 1.45628 1.07311 1.03045 1.78548 1.17489 0.86849 0.83618 0.77432 1.90621 1.16390 1.87027 1.57479 1.20649 0.96095 0.90341 1.52730 0.88408 1.27107 0.95383 1.05260 0.91006 1.70203 1.09991 1.29254 1.34194 0.85031 0.78251 0.74251 0.80557 1.17412 1.19993 1.17534 1.17636 0.95213 0.87708 0.92568 1.21256 1.02220 0.94484 0.97143 1.20517 0.95555 0.97360 0.97985 1.18931 0.99377 0.87213 0.96070 1.18677 0.97118 0.94220 0.89266 1.20491 1.01772 0.94005 0.99317 1.86272 1.49256 1.56428 1.32732 1.24026 0.89759 0.87195 1.05590 1.23943 1.01108 0.96830 0.83691 1.86240 1.69951 1.33697 1.33130 0.92342 0.90910 0.90961 0.91338 0.83441 0.81518 0.88626 0.91069 0.82637 0.82173 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.66 9.86 127.77 1.26 4.92 16 2 N -0.61 -29.78 2.92 -664.47 -1.94 -31.72 16 3 C 0.54 32.15 7.32 85.10 0.62 32.77 16 4 O -0.63 -43.73 14.34 -4.63 -0.07 -43.80 16 5 C -0.56 -31.80 8.53 23.59 0.20 -31.59 16 6 H 0.10 4.83 6.03 -2.91 -0.02 4.81 16 7 C 0.03 1.66 5.50 85.33 0.47 2.13 16 8 N -0.81 -49.75 11.73 21.85 0.26 -49.50 16 9 Si 1.00 40.21 29.56 68.60 2.03 42.24 16 10 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 11 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 12 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 13 C 0.16 7.35 4.89 38.34 0.19 7.54 16 14 C -0.13 -4.83 9.82 22.43 0.22 -4.61 16 15 C -0.10 -3.06 9.95 22.36 0.22 -2.84 16 16 C 0.03 1.01 6.51 22.66 0.15 1.15 16 17 C 0.05 2.10 6.49 22.57 0.15 2.25 16 18 C -0.13 -6.31 9.09 22.52 0.20 -6.11 16 19 O -0.33 -11.78 10.42 -82.50 -0.86 -12.64 16 20 C 0.01 0.20 7.26 72.14 0.52 0.72 16 21 C 0.02 0.36 7.26 72.14 0.52 0.88 16 22 O -0.32 -8.80 10.42 -82.67 -0.86 -9.66 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.07 2.68 6.33 -2.39 -0.02 2.66 16 25 H 0.07 2.22 8.05 -2.39 -0.02 2.20 16 26 H 0.28 15.39 8.29 -92.71 -0.77 14.62 16 27 H 0.15 4.75 8.06 -2.91 -0.02 4.73 16 28 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 29 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -82.96 286.75 4.42 -78.54 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.13 Total: 19.32 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 4.73 Total: 7.22 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -1.68 Total: -81.22 kcal Atomic # 8 Polarization: -64.31 SS G_CDS: -1.79 Total: -66.10 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -82.96 4.42 -78.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077362509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.200 kcal (2) G-P(sol) polarization free energy of solvation -82.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds