Wall clock time and date at job start Mon Mar 30 2020 05:11:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.34778 * 120.00149 * 2 1
4 4 O 1.21789 * 120.00061 * 185.30623 * 3 2 1
5 5 C 1.41708 * 119.99882 * 5.30086 * 3 2 1
6 6 H 1.07997 * 119.99422 * 359.97438 * 5 3 2
7 7 C 1.40132 * 119.99726 * 180.02562 * 5 3 2
8 8 N 1.30623 * 120.00353 * 359.97438 * 7 5 3
9 9 Si 1.86803 * 119.99854 * 180.02562 * 7 5 3
10 10 H 1.48505 * 109.47059 * 59.99535 * 9 7 5
11 11 H 1.48491 * 109.47230 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.46967 * 299.99821 * 9 7 5
13 13 C 1.39448 * 119.99852 * 180.02562 * 2 1 3
14 14 C 1.39179 * 120.02803 * 294.67349 * 13 2 1
15 15 C 1.37979 * 120.02538 * 179.77447 * 14 13 2
16 16 C 1.38884 * 120.17335 * 0.24622 * 15 14 13
17 17 C 1.39227 * 119.95119 * 359.94864 * 16 15 14
18 18 C 1.38505 * 119.89817 * 0.11221 * 17 16 15
19 19 O 1.36098 * 120.76158 * 180.20111 * 17 16 15
20 20 C 1.43177 * 116.69828 * 342.72787 * 19 17 16
21 21 C 1.53465 * 108.23912 * 46.28538 * 20 19 17
22 22 O 1.36113 * 119.32132 * 179.81392 * 16 15 14
23 23 H 1.09003 * 109.47258 * 270.00047 * 1 2 3
24 24 H 1.09001 * 109.47329 * 29.99999 * 1 2 3
25 25 H 1.08999 * 109.47222 * 150.00094 * 1 2 3
26 26 H 0.97001 * 120.00236 * 180.02562 * 8 7 5
27 27 H 1.07996 * 119.98723 * 0.05278 * 14 13 2
28 28 H 1.08001 * 119.91066 * 180.27009 * 15 14 13
29 29 H 1.07995 * 119.99272 * 179.88200 * 18 17 16
30 30 H 1.08994 * 109.71116 * 286.59864 * 20 19 17
31 31 H 1.09002 * 109.70728 * 165.96485 * 20 19 17
32 32 H 1.08993 * 109.70878 * 180.48452 * 21 20 19
33 33 H 1.09004 * 109.74162 * 59.88128 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3529 1.1694 -0.0975
5 6 1.4349 2.3918 0.1134
6 1 0.3584 2.3897 0.1994
7 6 2.1356 3.6054 0.1128
8 7 3.4376 3.6078 0.0083
9 14 1.2077 5.2197 0.2630
10 1 0.4547 5.2406 1.5428
11 1 2.1715 6.3489 0.2366
12 1 0.2589 5.3526 -0.8717
13 6 2.1622 -1.2077 -0.0005
14 6 2.0748 -2.0628 1.0941
15 6 2.7609 -3.2599 1.0915
16 6 3.5443 -3.6131 0.0005
17 6 3.6372 -2.7582 -1.0945
18 6 2.9496 -1.5559 -1.0919
19 8 4.3968 -3.0897 -2.1740
20 6 5.3667 -4.1257 -1.9844
21 6 4.6911 -5.2860 -1.2411
22 8 4.2168 -4.7964 0.0179
23 1 -0.3634 0.0000 1.0277
24 1 -0.3634 0.8900 -0.5138
25 1 -0.3633 -0.8900 -0.5138
26 1 3.9226 4.4478 0.0083
27 1 1.4661 -1.7914 1.9438
28 1 2.6883 -3.9241 1.9400
29 1 3.0221 -0.8907 -1.9395
30 1 6.1997 -3.7457 -1.3931
31 1 5.7296 -4.4711 -2.9525
32 1 5.4122 -6.0864 -1.0762
33 1 3.8532 -5.6614 -1.8286
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000077362509.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:11:55
Heat of formation + Delta-G solvation = -93.737040 kcal
Electronic energy + Delta-G solvation = -19649.076992 eV
Core-core repulsion = 16447.098431 eV
Total energy + Delta-G solvation = -3201.978560 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.099 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-42.19647 -40.41100 -38.23962 -38.13048 -35.61400 -34.63826 -31.94169 -31.49591
-29.57915 -28.29552 -27.15431 -25.39710 -24.06874 -22.61121 -21.04667 -19.58834
-18.61734 -18.22551 -18.13831 -17.66917 -16.68758 -16.41932 -15.90385 -15.86755
-15.64068 -15.35555 -14.86679 -14.67915 -14.42673 -14.15078 -13.56397 -13.41051
-13.14800 -13.05347 -12.83840 -12.67571 -12.36018 -12.07433 -12.03396 -11.94279
-11.47712 -10.94081 -9.87208 -9.75925 -9.41966 -8.74389 -8.33391 -6.97355
0.26936 0.31034 1.40488 1.43393 1.56119 2.02988 2.21161 2.28173
2.41550 2.68772 2.86050 3.31815 3.63784 3.68441 3.96692 4.07535
4.23323 4.26278 4.41454 4.47807 4.56197 4.59530 4.77899 4.86496
4.96413 4.99124 5.12390 5.29569 5.46013 5.55035 5.82392 5.92370
6.07637 6.39717 6.61049 6.78929 7.36653 8.44015 8.63672
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.037211 B = 0.005045 C = 0.004707
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 752.291921 B = 5548.565146 C = 5947.786020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.100 3.900
2 N -0.613 5.613
3 C 0.536 3.464
4 O -0.628 6.628
5 C -0.563 4.563
6 H 0.098 0.902
7 C 0.030 3.970
8 N -0.808 5.808
9 Si 1.001 2.999
10 H -0.250 1.250
11 H -0.275 1.275
12 H -0.252 1.252
13 C 0.162 3.838
14 C -0.131 4.131
15 C -0.095 4.095
16 C 0.029 3.971
17 C 0.053 3.947
18 C -0.135 4.135
19 O -0.332 6.332
20 C 0.009 3.991
21 C 0.019 3.981
22 O -0.315 6.315
23 H 0.058 0.942
24 H 0.072 0.928
25 H 0.072 0.928
26 H 0.277 0.723
27 H 0.148 0.852
28 H 0.167 0.833
29 H 0.095 0.905
30 H 0.071 0.929
31 H 0.156 0.844
32 H 0.161 0.839
33 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.909 -14.863 -0.825 15.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.041 4.041
2 N -0.345 5.345
3 C 0.346 3.654
4 O -0.515 6.515
5 C -0.598 4.598
6 H 0.116 0.884
7 C -0.188 4.188
8 N -0.436 5.436
9 Si 0.819 3.181
10 H -0.174 1.174
11 H -0.200 1.200
12 H -0.175 1.175
13 C 0.069 3.931
14 C -0.151 4.151
15 C -0.114 4.114
16 C -0.016 4.016
17 C 0.007 3.993
18 C -0.156 4.156
19 O -0.247 6.247
20 C -0.066 4.066
21 C -0.056 4.056
22 O -0.230 6.230
23 H 0.077 0.923
24 H 0.091 0.909
25 H 0.090 0.910
26 H 0.087 0.913
27 H 0.166 0.834
28 H 0.185 0.815
29 H 0.114 0.886
30 H 0.089 0.911
31 H 0.174 0.826
32 H 0.178 0.822
33 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -2.089 -14.787 -0.927 14.963
hybrid contribution 0.154 0.897 -0.348 0.975
sum -1.935 -13.890 -1.276 14.082
Atomic orbital electron populations
1.21673 0.77961 1.02657 1.01849 1.45628 1.07311 1.03045 1.78548
1.17489 0.86849 0.83618 0.77432 1.90621 1.16390 1.87027 1.57479
1.20649 0.96095 0.90341 1.52730 0.88408 1.27107 0.95383 1.05260
0.91006 1.70203 1.09991 1.29254 1.34194 0.85031 0.78251 0.74251
0.80557 1.17412 1.19993 1.17534 1.17636 0.95213 0.87708 0.92568
1.21256 1.02220 0.94484 0.97143 1.20517 0.95555 0.97360 0.97985
1.18931 0.99377 0.87213 0.96070 1.18677 0.97118 0.94220 0.89266
1.20491 1.01772 0.94005 0.99317 1.86272 1.49256 1.56428 1.32732
1.24026 0.89759 0.87195 1.05590 1.23943 1.01108 0.96830 0.83691
1.86240 1.69951 1.33697 1.33130 0.92342 0.90910 0.90961 0.91338
0.83441 0.81518 0.88626 0.91069 0.82637 0.82173 0.89809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 3.66 9.86 127.77 1.26 4.92 16
2 N -0.61 -29.78 2.92 -664.47 -1.94 -31.72 16
3 C 0.54 32.15 7.32 85.10 0.62 32.77 16
4 O -0.63 -43.73 14.34 -4.63 -0.07 -43.80 16
5 C -0.56 -31.80 8.53 23.59 0.20 -31.59 16
6 H 0.10 4.83 6.03 -2.91 -0.02 4.81 16
7 C 0.03 1.66 5.50 85.33 0.47 2.13 16
8 N -0.81 -49.75 11.73 21.85 0.26 -49.50 16
9 Si 1.00 40.21 29.56 68.60 2.03 42.24 16
10 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16
11 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16
12 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16
13 C 0.16 7.35 4.89 38.34 0.19 7.54 16
14 C -0.13 -4.83 9.82 22.43 0.22 -4.61 16
15 C -0.10 -3.06 9.95 22.36 0.22 -2.84 16
16 C 0.03 1.01 6.51 22.66 0.15 1.15 16
17 C 0.05 2.10 6.49 22.57 0.15 2.25 16
18 C -0.13 -6.31 9.09 22.52 0.20 -6.11 16
19 O -0.33 -11.78 10.42 -82.50 -0.86 -12.64 16
20 C 0.01 0.20 7.26 72.14 0.52 0.72 16
21 C 0.02 0.36 7.26 72.14 0.52 0.88 16
22 O -0.32 -8.80 10.42 -82.67 -0.86 -9.66 16
23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
24 H 0.07 2.68 6.33 -2.39 -0.02 2.66 16
25 H 0.07 2.22 8.05 -2.39 -0.02 2.20 16
26 H 0.28 15.39 8.29 -92.71 -0.77 14.62 16
27 H 0.15 4.75 8.06 -2.91 -0.02 4.73 16
28 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16
29 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16
30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
31 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16
32 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16
33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
Total: -1.00 -82.96 286.75 4.42 -78.54
By element:
Atomic # 1 Polarization: 18.19 SS G_CDS: 1.13 Total: 19.32 kcal
Atomic # 6 Polarization: 2.49 SS G_CDS: 4.73 Total: 7.22 kcal
Atomic # 7 Polarization: -79.53 SS G_CDS: -1.68 Total: -81.22 kcal
Atomic # 8 Polarization: -64.31 SS G_CDS: -1.79 Total: -66.10 kcal
Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal
Total: -82.96 4.42 -78.54 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000077362509.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.200 kcal
(2) G-P(sol) polarization free energy of solvation -82.956 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.156 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds