Wall clock time and date at job start Mon Mar 30 2020 04:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 H 1.08996 * 110.67783 * 52.02798 * 3 2 1 5 5 O 1.44388 * 110.61507 * 289.06589 * 3 2 1 6 6 C 1.43744 * 106.97351 * 201.43795 * 5 3 2 7 7 C 1.54096 * 107.29349 * 26.51341 * 6 5 3 8 8 C 1.54804 * 104.19065 * 357.97052 * 7 6 5 9 9 H 1.08999 * 110.90766 * 97.35074 * 8 7 6 10 10 C 1.52998 * 110.90978 * 220.92207 * 8 7 6 11 11 N 1.46507 * 109.46903 * 293.54392 * 10 8 7 12 12 S 1.65600 * 120.00133 * 164.99689 * 11 10 8 13 13 O 1.42103 * 106.39991 * 311.46310 * 12 11 10 14 14 O 1.42095 * 106.40377 * 178.54094 * 12 11 10 15 15 C 1.76199 * 107.21522 * 64.99915 * 12 11 10 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99836 * 179.72073 * 15 12 11 18 18 N 1.31514 * 119.99985 * 180.27759 * 17 15 12 19 19 Si 1.86800 * 119.99777 * 0.28262 * 17 15 12 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 H 1.08994 * 109.46851 * 60.00395 * 1 2 3 24 24 H 1.09004 * 109.46570 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47367 * 300.00126 * 1 2 3 26 26 H 1.08994 * 109.47500 * 239.99414 * 2 1 3 27 27 H 1.09005 * 109.47012 * 119.99109 * 2 1 3 28 28 H 1.09000 * 109.87499 * 267.08915 * 6 5 3 29 29 H 1.09005 * 109.99786 * 146.01058 * 6 5 3 30 30 H 1.08998 * 110.48881 * 239.28863 * 7 6 5 31 31 H 1.09002 * 110.48312 * 116.64535 * 7 6 5 32 32 H 1.08994 * 109.47626 * 173.54843 * 10 8 7 33 33 H 1.08996 * 109.47364 * 53.54050 * 10 8 7 34 34 H 0.96998 * 120.00066 * 345.00005 * 11 10 8 35 35 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5767 2.0145 0.8039 5 8 1.7933 2.0689 -1.2773 6 6 2.7073 3.1729 -1.3868 7 6 3.9332 2.8409 -0.5142 8 6 3.5844 1.4755 0.1265 9 1 4.0385 0.6566 -0.4316 10 6 4.0129 1.4358 1.5947 11 7 5.4746 1.4885 1.6784 12 16 6.2095 1.8332 3.1218 13 8 5.5560 2.9838 3.6400 14 8 7.6091 1.7757 2.8834 15 6 5.8379 0.5107 4.2252 16 1 5.2287 -0.3162 3.8913 17 6 6.3300 0.5285 5.5131 18 7 6.0572 -0.4613 6.3350 19 14 7.3842 1.9585 6.0904 20 1 6.5141 3.0112 6.6734 21 1 8.3430 1.4826 7.1199 22 1 8.1337 2.5182 4.9371 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.2317 4.0850 -1.0262 29 1 3.0147 3.3008 -2.4247 30 1 4.0701 3.5999 0.2560 31 1 4.8283 2.7556 -1.1305 32 1 3.6558 0.5135 2.0527 33 1 3.5879 2.2908 2.1204 34 1 6.0120 1.3214 0.8883 35 1 6.4032 -0.4486 7.2411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233924592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:38 Heat of formation + Delta-G solvation = -169.688678 kcal Electronic energy + Delta-G solvation = -18659.492071 eV Core-core repulsion = 15589.663952 eV Total energy + Delta-G solvation = -3069.828119 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71940 -37.69790 -36.55550 -36.48214 -35.17994 -34.47970 -32.54217 -29.54045 -28.55407 -26.09955 -24.16620 -22.03025 -21.65494 -20.98088 -19.46062 -18.59227 -17.76320 -17.19253 -16.81993 -16.46716 -16.08581 -15.74197 -15.33160 -15.24970 -14.89908 -14.41810 -14.31986 -13.93879 -13.70129 -13.41754 -13.22598 -13.03392 -12.69519 -12.57266 -12.50158 -12.30095 -12.16309 -11.86206 -11.71110 -11.57077 -11.40612 -11.32676 -11.20126 -10.57072 -10.22486 -8.96022 -7.51677 0.15429 1.05775 1.14875 1.22132 1.89481 2.42401 2.56706 2.90732 3.30885 3.56162 3.67470 3.83834 4.16584 4.19074 4.24513 4.29671 4.37210 4.43583 4.51256 4.65285 4.76221 4.88720 4.89173 4.95713 5.07104 5.14269 5.16997 5.26205 5.28875 5.39434 5.46545 5.98331 6.02100 6.30947 6.54858 8.21462 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.030428 B = 0.005805 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.977277 B = 4822.607706 C = 5414.893046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.082 3.918 4 H 0.073 0.927 5 O -0.387 6.387 6 C 0.046 3.954 7 C -0.157 4.157 8 C -0.118 4.118 9 H 0.104 0.896 10 C 0.128 3.872 11 N -1.107 6.107 12 S 2.700 3.300 13 O -1.029 7.029 14 O -1.030 7.030 15 C -1.037 5.037 16 H 0.108 0.892 17 C 0.108 3.892 18 N -0.854 5.854 19 Si 0.824 3.176 20 H -0.239 1.239 21 H -0.222 1.222 22 H -0.229 1.229 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.420 0.580 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 3.223 -13.323 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.024 3.976 4 H 0.091 0.909 5 O -0.306 6.306 6 C -0.030 4.030 7 C -0.195 4.195 8 C -0.138 4.138 9 H 0.122 0.878 10 C 0.002 3.998 11 N -0.868 5.868 12 S 2.799 3.201 13 O -1.019 7.019 14 O -1.020 7.020 15 C -1.170 5.170 16 H 0.126 0.874 17 C -0.109 4.109 18 N -0.484 5.484 19 Si 0.642 3.358 20 H -0.162 1.162 21 H -0.144 1.144 22 H -0.151 1.151 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.255 0.745 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.365 3.865 -12.965 15.404 hybrid contribution 0.537 -0.338 0.666 0.920 sum -6.827 3.527 -12.300 14.503 Atomic orbital electron populations 1.21714 0.94741 1.02196 1.01893 1.21633 0.97205 0.93611 1.03389 1.23218 0.92729 0.95217 0.86412 0.90906 1.88842 1.59178 1.45753 1.36851 1.23244 0.88806 0.89692 1.01305 1.23067 0.99825 0.96653 0.99912 1.22943 0.96723 0.99553 0.94630 0.87823 1.21269 0.78792 1.02366 0.97370 1.54930 1.14844 1.90370 1.26655 1.00423 0.71937 0.74498 0.73200 1.93376 1.76796 1.52063 1.79653 1.93438 1.33697 1.88897 1.85996 1.30991 1.46593 1.27646 1.11765 0.87353 1.25164 0.93209 0.96965 0.95549 1.70011 1.40010 1.30816 1.07564 0.87499 0.82288 0.81570 0.84492 1.16233 1.14390 1.15118 0.92732 0.91693 0.92703 0.90723 0.89967 0.91887 0.88300 0.90881 0.88961 0.91267 0.91095 0.74453 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.86 71.98 0.71 -2.03 16 2 C -0.12 -2.44 5.69 30.59 0.17 -2.26 16 3 C 0.08 1.85 2.75 31.28 0.09 1.93 16 4 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 5 O -0.39 -9.03 11.08 -148.98 -1.65 -10.68 16 6 C 0.05 0.89 7.70 72.35 0.56 1.45 16 7 C -0.16 -3.32 6.42 31.58 0.20 -3.11 16 8 C -0.12 -2.74 2.63 -9.50 -0.02 -2.77 16 9 H 0.10 2.18 8.06 -2.39 -0.02 2.16 16 10 C 0.13 3.89 5.57 86.38 0.48 4.37 16 11 N -1.11 -38.75 5.81 -187.49 -1.09 -39.84 16 12 S 2.70 129.52 4.24 -56.49 -0.24 129.28 16 13 O -1.03 -52.83 16.31 -128.00 -2.09 -54.92 16 14 O -1.03 -53.54 16.01 -128.00 -2.05 -55.59 16 15 C -1.04 -57.10 10.26 67.74 0.69 -56.40 16 16 H 0.11 6.05 8.06 -2.91 -0.02 6.02 16 17 C 0.11 6.13 5.47 84.66 0.46 6.59 16 18 N -0.85 -49.00 13.96 21.45 0.30 -48.70 16 19 Si 0.82 40.72 26.54 68.60 1.82 42.54 16 20 H -0.24 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.22 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.23 -11.59 5.60 99.48 0.56 -11.03 16 23 H 0.05 1.04 8.06 -2.39 -0.02 1.03 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.64 7.95 -2.38 -0.02 1.62 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.07 1.71 7.82 -2.39 -0.02 1.69 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.08 7.95 -2.39 -0.02 2.07 16 33 H 0.07 2.27 7.70 -2.39 -0.02 2.25 16 34 H 0.42 12.20 8.65 -96.75 -0.84 11.36 16 35 H 0.29 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -67.47 299.56 -1.56 -69.03 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.09 Total: 21.10 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 3.34 Total: -52.24 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -0.79 Total: -88.53 kcal Atomic # 8 Polarization: -115.40 SS G_CDS: -5.79 Total: -121.19 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.82 Total: 42.54 kcal Atomic # 16 Polarization: 129.52 SS G_CDS: -0.24 Total: 129.28 kcal Total: -67.47 -1.56 -69.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233924592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.657 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds