Wall clock time and date at job start Mon Mar 30 2020 04:29:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.47088 * 2 1
4 4 H 1.08996 * 110.67783 * 52.02798 * 3 2 1
5 5 O 1.44388 * 110.61507 * 289.06589 * 3 2 1
6 6 C 1.43744 * 106.97351 * 201.43795 * 5 3 2
7 7 C 1.54096 * 107.29349 * 26.51341 * 6 5 3
8 8 C 1.54804 * 104.19065 * 357.97052 * 7 6 5
9 9 H 1.08999 * 110.90766 * 97.35074 * 8 7 6
10 10 C 1.52998 * 110.90978 * 220.92207 * 8 7 6
11 11 N 1.46507 * 109.46903 * 293.54392 * 10 8 7
12 12 S 1.65600 * 120.00133 * 164.99689 * 11 10 8
13 13 O 1.42103 * 106.39991 * 311.46310 * 12 11 10
14 14 O 1.42095 * 106.40377 * 178.54094 * 12 11 10
15 15 C 1.76199 * 107.21522 * 64.99915 * 12 11 10
16 16 H 1.08002 * 120.00405 * 0.02562 * 15 12 11
17 17 C 1.37884 * 119.99836 * 179.72073 * 15 12 11
18 18 N 1.31514 * 119.99985 * 180.27759 * 17 15 12
19 19 Si 1.86800 * 119.99777 * 0.28262 * 17 15 12
20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15
21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15
22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15
23 23 H 1.08994 * 109.46851 * 60.00395 * 1 2 3
24 24 H 1.09004 * 109.46570 * 180.02562 * 1 2 3
25 25 H 1.08999 * 109.47367 * 300.00126 * 1 2 3
26 26 H 1.08994 * 109.47500 * 239.99414 * 2 1 3
27 27 H 1.09005 * 109.47012 * 119.99109 * 2 1 3
28 28 H 1.09000 * 109.87499 * 267.08915 * 6 5 3
29 29 H 1.09005 * 109.99786 * 146.01058 * 6 5 3
30 30 H 1.08998 * 110.48881 * 239.28863 * 7 6 5
31 31 H 1.09002 * 110.48312 * 116.64535 * 7 6 5
32 32 H 1.08994 * 109.47626 * 173.54843 * 10 8 7
33 33 H 1.08996 * 109.47364 * 53.54050 * 10 8 7
34 34 H 0.96998 * 120.00066 * 345.00005 * 11 10 8
35 35 H 0.96996 * 119.99730 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5767 2.0145 0.8039
5 8 1.7933 2.0689 -1.2773
6 6 2.7073 3.1729 -1.3868
7 6 3.9332 2.8409 -0.5142
8 6 3.5844 1.4755 0.1265
9 1 4.0385 0.6566 -0.4316
10 6 4.0129 1.4358 1.5947
11 7 5.4746 1.4885 1.6784
12 16 6.2095 1.8332 3.1218
13 8 5.5560 2.9838 3.6400
14 8 7.6091 1.7757 2.8834
15 6 5.8379 0.5107 4.2252
16 1 5.2287 -0.3162 3.8913
17 6 6.3300 0.5285 5.5131
18 7 6.0572 -0.4613 6.3350
19 14 7.3842 1.9585 6.0904
20 1 6.5141 3.0112 6.6734
21 1 8.3430 1.4826 7.1199
22 1 8.1337 2.5182 4.9371
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3632 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 1.8934 -0.5139 -0.8899
27 1 1.8933 -0.5137 0.8901
28 1 2.2317 4.0850 -1.0262
29 1 3.0147 3.3008 -2.4247
30 1 4.0701 3.5999 0.2560
31 1 4.8283 2.7556 -1.1305
32 1 3.6558 0.5135 2.0527
33 1 3.5879 2.2908 2.1204
34 1 6.0120 1.3214 0.8883
35 1 6.4032 -0.4486 7.2411
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000233924592.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:29:38
Heat of formation + Delta-G solvation = -169.688678 kcal
Electronic energy + Delta-G solvation = -18659.492071 eV
Core-core repulsion = 15589.663952 eV
Total energy + Delta-G solvation = -3069.828119 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.71940 -37.69790 -36.55550 -36.48214 -35.17994 -34.47970 -32.54217 -29.54045
-28.55407 -26.09955 -24.16620 -22.03025 -21.65494 -20.98088 -19.46062 -18.59227
-17.76320 -17.19253 -16.81993 -16.46716 -16.08581 -15.74197 -15.33160 -15.24970
-14.89908 -14.41810 -14.31986 -13.93879 -13.70129 -13.41754 -13.22598 -13.03392
-12.69519 -12.57266 -12.50158 -12.30095 -12.16309 -11.86206 -11.71110 -11.57077
-11.40612 -11.32676 -11.20126 -10.57072 -10.22486 -8.96022 -7.51677 0.15429
1.05775 1.14875 1.22132 1.89481 2.42401 2.56706 2.90732 3.30885
3.56162 3.67470 3.83834 4.16584 4.19074 4.24513 4.29671 4.37210
4.43583 4.51256 4.65285 4.76221 4.88720 4.89173 4.95713 5.07104
5.14269 5.16997 5.26205 5.28875 5.39434 5.46545 5.98331 6.02100
6.30947 6.54858 8.21462
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.030428 B = 0.005805 C = 0.005170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 919.977277 B = 4822.607706 C = 5414.893046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.121 4.121
3 C 0.082 3.918
4 H 0.073 0.927
5 O -0.387 6.387
6 C 0.046 3.954
7 C -0.157 4.157
8 C -0.118 4.118
9 H 0.104 0.896
10 C 0.128 3.872
11 N -1.107 6.107
12 S 2.700 3.300
13 O -1.029 7.029
14 O -1.030 7.030
15 C -1.037 5.037
16 H 0.108 0.892
17 C 0.108 3.892
18 N -0.854 5.854
19 Si 0.824 3.176
20 H -0.239 1.239
21 H -0.222 1.222
22 H -0.229 1.229
23 H 0.054 0.946
24 H 0.064 0.936
25 H 0.054 0.946
26 H 0.074 0.926
27 H 0.082 0.918
28 H 0.063 0.937
29 H 0.099 0.901
30 H 0.072 0.928
31 H 0.092 0.908
32 H 0.069 0.931
33 H 0.071 0.929
34 H 0.420 0.580
35 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.612 3.223 -13.323 15.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.158 4.158
3 C 0.024 3.976
4 H 0.091 0.909
5 O -0.306 6.306
6 C -0.030 4.030
7 C -0.195 4.195
8 C -0.138 4.138
9 H 0.122 0.878
10 C 0.002 3.998
11 N -0.868 5.868
12 S 2.799 3.201
13 O -1.019 7.019
14 O -1.020 7.020
15 C -1.170 5.170
16 H 0.126 0.874
17 C -0.109 4.109
18 N -0.484 5.484
19 Si 0.642 3.358
20 H -0.162 1.162
21 H -0.144 1.144
22 H -0.151 1.151
23 H 0.073 0.927
24 H 0.083 0.917
25 H 0.073 0.927
26 H 0.093 0.907
27 H 0.100 0.900
28 H 0.081 0.919
29 H 0.117 0.883
30 H 0.091 0.909
31 H 0.110 0.890
32 H 0.087 0.913
33 H 0.089 0.911
34 H 0.255 0.745
35 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -7.365 3.865 -12.965 15.404
hybrid contribution 0.537 -0.338 0.666 0.920
sum -6.827 3.527 -12.300 14.503
Atomic orbital electron populations
1.21714 0.94741 1.02196 1.01893 1.21633 0.97205 0.93611 1.03389
1.23218 0.92729 0.95217 0.86412 0.90906 1.88842 1.59178 1.45753
1.36851 1.23244 0.88806 0.89692 1.01305 1.23067 0.99825 0.96653
0.99912 1.22943 0.96723 0.99553 0.94630 0.87823 1.21269 0.78792
1.02366 0.97370 1.54930 1.14844 1.90370 1.26655 1.00423 0.71937
0.74498 0.73200 1.93376 1.76796 1.52063 1.79653 1.93438 1.33697
1.88897 1.85996 1.30991 1.46593 1.27646 1.11765 0.87353 1.25164
0.93209 0.96965 0.95549 1.70011 1.40010 1.30816 1.07564 0.87499
0.82288 0.81570 0.84492 1.16233 1.14390 1.15118 0.92732 0.91693
0.92703 0.90723 0.89967 0.91887 0.88300 0.90881 0.88961 0.91267
0.91095 0.74453 0.89878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 22.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.74 9.86 71.98 0.71 -2.03 16
2 C -0.12 -2.44 5.69 30.59 0.17 -2.26 16
3 C 0.08 1.85 2.75 31.28 0.09 1.93 16
4 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16
5 O -0.39 -9.03 11.08 -148.98 -1.65 -10.68 16
6 C 0.05 0.89 7.70 72.35 0.56 1.45 16
7 C -0.16 -3.32 6.42 31.58 0.20 -3.11 16
8 C -0.12 -2.74 2.63 -9.50 -0.02 -2.77 16
9 H 0.10 2.18 8.06 -2.39 -0.02 2.16 16
10 C 0.13 3.89 5.57 86.38 0.48 4.37 16
11 N -1.11 -38.75 5.81 -187.49 -1.09 -39.84 16
12 S 2.70 129.52 4.24 -56.49 -0.24 129.28 16
13 O -1.03 -52.83 16.31 -128.00 -2.09 -54.92 16
14 O -1.03 -53.54 16.01 -128.00 -2.05 -55.59 16
15 C -1.04 -57.10 10.26 67.74 0.69 -56.40 16
16 H 0.11 6.05 8.06 -2.91 -0.02 6.02 16
17 C 0.11 6.13 5.47 84.66 0.46 6.59 16
18 N -0.85 -49.00 13.96 21.45 0.30 -48.70 16
19 Si 0.82 40.72 26.54 68.60 1.82 42.54 16
20 H -0.24 -11.44 7.11 99.48 0.71 -10.73 16
21 H -0.22 -9.69 7.11 99.48 0.71 -8.98 16
22 H -0.23 -11.59 5.60 99.48 0.56 -11.03 16
23 H 0.05 1.04 8.06 -2.39 -0.02 1.03 16
24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
27 H 0.08 1.64 7.95 -2.38 -0.02 1.62 16
28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16
30 H 0.07 1.71 7.82 -2.39 -0.02 1.69 16
31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
32 H 0.07 2.08 7.95 -2.39 -0.02 2.07 16
33 H 0.07 2.27 7.70 -2.39 -0.02 2.25 16
34 H 0.42 12.20 8.65 -96.75 -0.84 11.36 16
35 H 0.29 15.04 8.31 -92.71 -0.77 14.27 16
Total: -1.00 -67.47 299.56 -1.56 -69.03
By element:
Atomic # 1 Polarization: 21.01 SS G_CDS: 0.09 Total: 21.10 kcal
Atomic # 6 Polarization: -55.58 SS G_CDS: 3.34 Total: -52.24 kcal
Atomic # 7 Polarization: -87.74 SS G_CDS: -0.79 Total: -88.53 kcal
Atomic # 8 Polarization: -115.40 SS G_CDS: -5.79 Total: -121.19 kcal
Atomic # 14 Polarization: 40.72 SS G_CDS: 1.82 Total: 42.54 kcal
Atomic # 16 Polarization: 129.52 SS G_CDS: -0.24 Total: 129.28 kcal
Total: -67.47 -1.56 -69.03 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000233924592.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -100.657 kcal
(2) G-P(sol) polarization free energy of solvation -67.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.126 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) -169.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds