Wall clock time and date at job start Mon Mar 30 2020 05:27:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86801 * 120.00170 * 2 1
4 4 H 1.48505 * 109.46555 * 269.99524 * 3 2 1
5 5 H 1.48502 * 109.47096 * 29.99021 * 3 2 1
6 6 H 1.48496 * 109.47309 * 149.99422 * 3 2 1
7 7 C 1.37878 * 119.99836 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00026 * 180.02562 * 7 2 1
9 9 C 1.50700 * 120.00044 * 0.02562 * 7 2 1
10 10 N 1.46498 * 109.46992 * 180.02562 * 9 7 2
11 11 C 1.34775 * 120.00058 * 180.02562 * 10 9 7
12 12 O 1.21582 * 120.00236 * 359.97438 * 11 10 9
13 13 N 1.34783 * 120.00236 * 179.97438 * 11 10 9
14 14 C 1.39274 * 119.99771 * 185.70980 * 13 11 10
15 15 C 1.38856 * 120.17332 * 25.25445 * 14 13 11
16 16 C 1.38009 * 120.07632 * 179.97438 * 15 14 13
17 17 C 1.38570 * 120.40184 * 359.95970 * 16 15 14
18 18 C 1.37784 * 120.33461 * 0.02562 * 17 16 15
19 19 C 1.39697 * 119.92110 * 0.02562 * 18 17 16
20 20 C 1.47509 * 120.19730 * 179.97438 * 19 18 17
21 21 N 1.34773 * 120.00289 * 5.34540 * 20 19 18
22 22 O 1.21597 * 119.99596 * 185.35028 * 20 19 18
23 23 H 0.97002 * 119.99971 * 0.02562 * 1 2 3
24 24 H 1.08994 * 109.47159 * 59.99929 * 9 7 2
25 25 H 1.09003 * 109.47043 * 299.99814 * 9 7 2
26 26 H 0.96999 * 120.00377 * 359.97438 * 10 9 7
27 27 H 0.96991 * 119.99677 * 5.70271 * 13 11 10
28 28 H 1.08000 * 119.95804 * 359.97438 * 15 14 13
29 29 H 1.07994 * 119.79786 * 179.97438 * 16 15 14
30 30 H 1.08005 * 119.82994 * 180.02562 * 17 16 15
31 31 H 1.08007 * 120.03966 * 179.74857 * 18 17 16
32 32 H 0.96998 * 119.99857 * 0.02562 * 21 20 19
33 33 H 0.96999 * 120.00228 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0462 -1.4002
5 1 1.4465 2.6527 0.6998
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 7 2.2029 -3.6127 0.0018
11 6 1.7537 -4.8833 0.0015
12 8 0.5584 -5.1056 0.0006
13 7 2.6295 -5.9078 0.0021
14 6 2.1698 -7.2170 -0.1182
15 6 0.9571 -7.4762 -0.7428
16 6 0.5037 -8.7743 -0.8614
17 6 1.2526 -9.8271 -0.3606
18 6 2.4585 -9.5891 0.2619
19 6 2.9300 -8.2804 0.3904
20 6 4.2199 -8.0186 1.0564
21 7 4.9980 -9.0475 1.4467
22 8 4.5812 -6.8743 1.2532
23 1 -0.4850 0.8401 -0.0004
24 1 0.6247 -2.5571 -0.8896
25 1 0.6240 -2.5567 0.8903
26 1 3.1566 -3.4355 0.0021
27 1 3.5799 -5.7333 0.0862
28 1 0.3680 -6.6610 -1.1362
29 1 -0.4404 -8.9707 -1.3476
30 1 0.8892 -10.8395 -0.4589
31 1 3.0365 -10.4130 0.6541
32 1 4.7099 -9.9602 1.2894
33 1 5.8460 -8.8753 1.8849
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000243476253.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:27:15
Heat of formation + Delta-G solvation = -37.449357 kcal
Electronic energy + Delta-G solvation = -19005.137525 eV
Core-core repulsion = 15837.892533 eV
Total energy + Delta-G solvation = -3167.244992 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.106 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.76336 -39.20110 -37.92969 -34.85692 -34.15386 -33.70952 -32.33973 -30.90416
-29.53948 -26.98902 -24.11239 -23.36366 -22.02214 -20.90289 -20.17460 -18.26275
-18.06112 -17.15476 -16.91253 -15.99389 -15.44281 -15.06825 -14.90350 -14.75867
-14.41701 -14.23499 -13.77658 -13.42655 -13.02020 -12.73038 -12.11955 -11.96988
-11.89794 -11.55021 -10.94525 -10.89724 -10.40700 -10.28632 -10.02771 -9.94204
-9.38361 -9.37307 -8.96673 -8.73139 -8.09798 -7.67944 -6.14705 -4.21204
0.82061 1.41306 2.79070 3.21209 3.26851 3.33099 3.33641 3.37231
3.61484 4.06542 4.34323 4.66209 4.69984 4.92790 5.01369 5.21699
5.30374 5.45394 5.59967 5.85142 6.17614 6.25929 6.50958 6.55286
6.67084 7.02316 7.13155 7.17457 7.43080 7.53955 7.54872 7.86150
8.00597 8.09772 8.71517 8.85734 9.19830 9.45576 10.95544
Molecular weight = 263.11amu
Principal moments of inertia in cm(-1)
A = 0.031102 B = 0.004277 C = 0.003800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 900.057875 B = 6545.252938 C = 7366.561788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.064 3.936
3 Si 0.905 3.095
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.543 4.543
8 H 0.064 0.936
9 C 0.265 3.735
10 N -0.717 5.717
11 C 0.689 3.311
12 O -0.584 6.584
13 N -0.678 5.678
14 C 0.255 3.745
15 C -0.147 4.147
16 C -0.066 4.066
17 C -0.165 4.165
18 C -0.063 4.063
19 C -0.203 4.203
20 C 0.572 3.428
21 N -0.852 5.852
22 O -0.545 6.545
23 H 0.266 0.734
24 H 0.028 0.972
25 H 0.028 0.972
26 H 0.391 0.609
27 H 0.418 0.582
28 H 0.158 0.842
29 H 0.128 0.872
30 H 0.125 0.875
31 H 0.124 0.876
32 H 0.400 0.600
33 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.720 -21.485 -0.426 22.833
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.139 4.139
3 Si 0.732 3.268
4 H -0.205 1.205
5 H -0.210 1.210
6 H -0.197 1.197
7 C -0.581 4.581
8 H 0.082 0.918
9 C 0.144 3.856
10 N -0.368 5.368
11 C 0.389 3.611
12 O -0.462 6.462
13 N -0.328 5.328
14 C 0.153 3.847
15 C -0.168 4.168
16 C -0.085 4.085
17 C -0.185 4.185
18 C -0.082 4.082
19 C -0.210 4.210
20 C 0.360 3.640
21 N -0.415 5.415
22 O -0.424 6.424
23 H 0.076 0.924
24 H 0.046 0.954
25 H 0.046 0.954
26 H 0.224 0.776
27 H 0.261 0.739
28 H 0.176 0.824
29 H 0.146 0.854
30 H 0.143 0.857
31 H 0.142 0.858
32 H 0.230 0.770
33 H 0.235 0.765
Dipole moment (debyes) X Y Z Total
from point charges 6.581 -20.540 -0.368 21.572
hybrid contribution 1.513 0.604 0.255 1.649
sum 8.094 -19.936 -0.113 21.517
Atomic orbital electron populations
1.69977 1.06088 1.27313 1.48927 1.24934 0.94923 0.99405 0.94682
0.86392 0.79639 0.82542 0.78206 1.20457 1.20996 1.19725 1.21223
0.93377 0.90318 1.53209 0.91816 1.19081 0.87729 0.80901 0.97884
1.45803 1.11354 1.04082 1.75546 1.16211 0.85026 0.81260 0.78616
1.90829 1.14001 1.83751 1.57655 1.43291 1.12149 1.03287 1.74079
1.17603 0.93029 0.83023 0.91089 1.21655 0.96373 0.98415 1.00368
1.21275 0.98929 0.91997 0.96283 1.20931 0.95662 0.99274 1.02603
1.20932 0.96040 0.94151 0.97125 1.19445 0.98068 0.94003 1.09458
1.18181 0.83883 0.84733 0.77238 1.43679 1.24295 1.09346 1.64184
1.90655 1.73880 1.21303 1.56532 0.92440 0.95360 0.95418 0.77643
0.73877 0.82420 0.85386 0.85736 0.85835 0.77020 0.76542
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16
2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16
3 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16
4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
7 C -0.54 -15.06 9.28 -34.44 -0.32 -15.38 16
8 H 0.06 1.67 7.60 -52.49 -0.40 1.27 16
9 C 0.26 7.20 5.43 -5.19 -0.03 7.17 16
10 N -0.72 -16.19 5.55 -66.42 -0.37 -16.56 16
11 C 0.69 15.09 8.36 -86.91 -0.73 14.37 16
12 O -0.58 -14.38 13.53 5.29 0.07 -14.31 16
13 N -0.68 -12.30 4.86 -14.05 -0.07 -12.37 16
14 C 0.26 4.15 6.43 -83.49 -0.54 3.62 16
15 C -0.15 -2.32 8.70 -39.44 -0.34 -2.66 16
16 C -0.07 -0.78 10.03 -39.54 -0.40 -1.18 16
17 C -0.17 -1.60 10.02 -39.62 -0.40 -1.99 16
18 C -0.06 -0.61 9.52 -39.20 -0.37 -0.98 16
19 C -0.20 -2.64 5.89 -104.81 -0.62 -3.26 16
20 C 0.57 7.23 8.02 -12.48 -0.10 7.13 16
21 N -0.85 -6.37 8.82 30.45 0.27 -6.10 16
22 O -0.55 -8.87 14.65 5.28 0.08 -8.79 16
23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
26 H 0.39 7.83 8.34 -40.82 -0.34 7.49 16
27 H 0.42 7.16 6.03 -40.82 -0.25 6.92 16
28 H 0.16 2.89 5.81 -52.49 -0.31 2.58 16
29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16
30 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16
31 H 0.12 0.69 6.44 -52.48 -0.34 0.35 16
32 H 0.40 1.75 6.89 -40.82 -0.28 1.47 16
33 H 0.40 2.49 8.93 -40.82 -0.36 2.13 16
LS Contribution 289.43 15.07 4.36 4.36
Total: -1.00 -34.44 289.43 -6.98 -41.42
By element:
Atomic # 1 Polarization: 16.31 SS G_CDS: -3.10 Total: 13.21 kcal
Atomic # 6 Polarization: 12.48 SS G_CDS: -3.94 Total: 8.54 kcal
Atomic # 7 Polarization: -61.18 SS G_CDS: 0.57 Total: -60.61 kcal
Atomic # 8 Polarization: -23.25 SS G_CDS: 0.15 Total: -23.10 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -34.44 -6.98 -41.42 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000243476253.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.972 kcal
(2) G-P(sol) polarization free energy of solvation -34.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds