Wall clock time and date at job start Mon Mar 30 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48505 * 109.46555 * 269.99524 * 3 2 1 5 5 H 1.48502 * 109.47096 * 29.99021 * 3 2 1 6 6 H 1.48496 * 109.47309 * 149.99422 * 3 2 1 7 7 C 1.37878 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00044 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00058 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00236 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00236 * 179.97438 * 11 10 9 14 14 C 1.39274 * 119.99771 * 185.70980 * 13 11 10 15 15 C 1.38856 * 120.17332 * 25.25445 * 14 13 11 16 16 C 1.38009 * 120.07632 * 179.97438 * 15 14 13 17 17 C 1.38570 * 120.40184 * 359.95970 * 16 15 14 18 18 C 1.37784 * 120.33461 * 0.02562 * 17 16 15 19 19 C 1.39697 * 119.92110 * 0.02562 * 18 17 16 20 20 C 1.47509 * 120.19730 * 179.97438 * 19 18 17 21 21 N 1.34773 * 120.00289 * 5.34540 * 20 19 18 22 22 O 1.21597 * 119.99596 * 185.35028 * 20 19 18 23 23 H 0.97002 * 119.99971 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47159 * 59.99929 * 9 7 2 25 25 H 1.09003 * 109.47043 * 299.99814 * 9 7 2 26 26 H 0.96999 * 120.00377 * 359.97438 * 10 9 7 27 27 H 0.96991 * 119.99677 * 5.70271 * 13 11 10 28 28 H 1.08000 * 119.95804 * 359.97438 * 15 14 13 29 29 H 1.07994 * 119.79786 * 179.97438 * 16 15 14 30 30 H 1.08005 * 119.82994 * 180.02562 * 17 16 15 31 31 H 1.08007 * 120.03966 * 179.74857 * 18 17 16 32 32 H 0.96998 * 119.99857 * 0.02562 * 21 20 19 33 33 H 0.96999 * 120.00228 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7537 -4.8833 0.0015 12 8 0.5584 -5.1056 0.0006 13 7 2.6295 -5.9078 0.0021 14 6 2.1698 -7.2170 -0.1182 15 6 0.9571 -7.4762 -0.7428 16 6 0.5037 -8.7743 -0.8614 17 6 1.2526 -9.8271 -0.3606 18 6 2.4585 -9.5891 0.2619 19 6 2.9300 -8.2804 0.3904 20 6 4.2199 -8.0186 1.0564 21 7 4.9980 -9.0475 1.4467 22 8 4.5812 -6.8743 1.2532 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0021 27 1 3.5799 -5.7333 0.0862 28 1 0.3680 -6.6610 -1.1362 29 1 -0.4404 -8.9707 -1.3476 30 1 0.8892 -10.8395 -0.4589 31 1 3.0365 -10.4130 0.6541 32 1 4.7099 -9.9602 1.2894 33 1 5.8460 -8.8753 1.8849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243476253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:15 Heat of formation + Delta-G solvation = -37.449357 kcal Electronic energy + Delta-G solvation = -19005.137525 eV Core-core repulsion = 15837.892533 eV Total energy + Delta-G solvation = -3167.244992 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76336 -39.20110 -37.92969 -34.85692 -34.15386 -33.70952 -32.33973 -30.90416 -29.53948 -26.98902 -24.11239 -23.36366 -22.02214 -20.90289 -20.17460 -18.26275 -18.06112 -17.15476 -16.91253 -15.99389 -15.44281 -15.06825 -14.90350 -14.75867 -14.41701 -14.23499 -13.77658 -13.42655 -13.02020 -12.73038 -12.11955 -11.96988 -11.89794 -11.55021 -10.94525 -10.89724 -10.40700 -10.28632 -10.02771 -9.94204 -9.38361 -9.37307 -8.96673 -8.73139 -8.09798 -7.67944 -6.14705 -4.21204 0.82061 1.41306 2.79070 3.21209 3.26851 3.33099 3.33641 3.37231 3.61484 4.06542 4.34323 4.66209 4.69984 4.92790 5.01369 5.21699 5.30374 5.45394 5.59967 5.85142 6.17614 6.25929 6.50958 6.55286 6.67084 7.02316 7.13155 7.17457 7.43080 7.53955 7.54872 7.86150 8.00597 8.09772 8.71517 8.85734 9.19830 9.45576 10.95544 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.031102 B = 0.004277 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.057875 B = 6545.252938 C = 7366.561788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.265 3.735 10 N -0.717 5.717 11 C 0.689 3.311 12 O -0.584 6.584 13 N -0.678 5.678 14 C 0.255 3.745 15 C -0.147 4.147 16 C -0.066 4.066 17 C -0.165 4.165 18 C -0.063 4.063 19 C -0.203 4.203 20 C 0.572 3.428 21 N -0.852 5.852 22 O -0.545 6.545 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.391 0.609 27 H 0.418 0.582 28 H 0.158 0.842 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.400 0.600 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.720 -21.485 -0.426 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.144 3.856 10 N -0.368 5.368 11 C 0.389 3.611 12 O -0.462 6.462 13 N -0.328 5.328 14 C 0.153 3.847 15 C -0.168 4.168 16 C -0.085 4.085 17 C -0.185 4.185 18 C -0.082 4.082 19 C -0.210 4.210 20 C 0.360 3.640 21 N -0.415 5.415 22 O -0.424 6.424 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.224 0.776 27 H 0.261 0.739 28 H 0.176 0.824 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.230 0.770 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.581 -20.540 -0.368 21.572 hybrid contribution 1.513 0.604 0.255 1.649 sum 8.094 -19.936 -0.113 21.517 Atomic orbital electron populations 1.69977 1.06088 1.27313 1.48927 1.24934 0.94923 0.99405 0.94682 0.86392 0.79639 0.82542 0.78206 1.20457 1.20996 1.19725 1.21223 0.93377 0.90318 1.53209 0.91816 1.19081 0.87729 0.80901 0.97884 1.45803 1.11354 1.04082 1.75546 1.16211 0.85026 0.81260 0.78616 1.90829 1.14001 1.83751 1.57655 1.43291 1.12149 1.03287 1.74079 1.17603 0.93029 0.83023 0.91089 1.21655 0.96373 0.98415 1.00368 1.21275 0.98929 0.91997 0.96283 1.20931 0.95662 0.99274 1.02603 1.20932 0.96040 0.94151 0.97125 1.19445 0.98068 0.94003 1.09458 1.18181 0.83883 0.84733 0.77238 1.43679 1.24295 1.09346 1.64184 1.90655 1.73880 1.21303 1.56532 0.92440 0.95360 0.95418 0.77643 0.73877 0.82420 0.85386 0.85736 0.85835 0.77020 0.76542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.06 9.28 -34.44 -0.32 -15.38 16 8 H 0.06 1.67 7.60 -52.49 -0.40 1.27 16 9 C 0.26 7.20 5.43 -5.19 -0.03 7.17 16 10 N -0.72 -16.19 5.55 -66.42 -0.37 -16.56 16 11 C 0.69 15.09 8.36 -86.91 -0.73 14.37 16 12 O -0.58 -14.38 13.53 5.29 0.07 -14.31 16 13 N -0.68 -12.30 4.86 -14.05 -0.07 -12.37 16 14 C 0.26 4.15 6.43 -83.49 -0.54 3.62 16 15 C -0.15 -2.32 8.70 -39.44 -0.34 -2.66 16 16 C -0.07 -0.78 10.03 -39.54 -0.40 -1.18 16 17 C -0.17 -1.60 10.02 -39.62 -0.40 -1.99 16 18 C -0.06 -0.61 9.52 -39.20 -0.37 -0.98 16 19 C -0.20 -2.64 5.89 -104.81 -0.62 -3.26 16 20 C 0.57 7.23 8.02 -12.48 -0.10 7.13 16 21 N -0.85 -6.37 8.82 30.45 0.27 -6.10 16 22 O -0.55 -8.87 14.65 5.28 0.08 -8.79 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.39 7.83 8.34 -40.82 -0.34 7.49 16 27 H 0.42 7.16 6.03 -40.82 -0.25 6.92 16 28 H 0.16 2.89 5.81 -52.49 -0.31 2.58 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.12 0.69 6.44 -52.48 -0.34 0.35 16 32 H 0.40 1.75 6.89 -40.82 -0.28 1.47 16 33 H 0.40 2.49 8.93 -40.82 -0.36 2.13 16 LS Contribution 289.43 15.07 4.36 4.36 Total: -1.00 -34.44 289.43 -6.98 -41.42 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -3.10 Total: 13.21 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -3.94 Total: 8.54 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.57 Total: -60.61 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.15 Total: -23.10 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.44 -6.98 -41.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243476253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.972 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds