Wall clock time and date at job start Mon Mar 30 2020 05:27:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86801 * 120.00170 * 2 1
4 4 H 1.48505 * 109.46555 * 269.99524 * 3 2 1
5 5 H 1.48502 * 109.47096 * 29.99021 * 3 2 1
6 6 H 1.48496 * 109.47309 * 149.99422 * 3 2 1
7 7 C 1.37878 * 119.99836 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00026 * 180.02562 * 7 2 1
9 9 C 1.50700 * 120.00044 * 0.02562 * 7 2 1
10 10 N 1.46498 * 109.46992 * 180.02562 * 9 7 2
11 11 C 1.34775 * 120.00058 * 180.02562 * 10 9 7
12 12 O 1.21582 * 120.00236 * 359.97438 * 11 10 9
13 13 N 1.34783 * 120.00236 * 179.97438 * 11 10 9
14 14 C 1.39274 * 119.99771 * 185.70980 * 13 11 10
15 15 C 1.38856 * 120.17332 * 25.25445 * 14 13 11
16 16 C 1.38009 * 120.07632 * 179.97438 * 15 14 13
17 17 C 1.38570 * 120.40184 * 359.95970 * 16 15 14
18 18 C 1.37784 * 120.33461 * 0.02562 * 17 16 15
19 19 C 1.39697 * 119.92110 * 0.02562 * 18 17 16
20 20 C 1.47509 * 120.19730 * 179.97438 * 19 18 17
21 21 N 1.34773 * 120.00289 * 5.34540 * 20 19 18
22 22 O 1.21597 * 119.99596 * 185.35028 * 20 19 18
23 23 H 0.97002 * 119.99971 * 0.02562 * 1 2 3
24 24 H 1.08994 * 109.47159 * 59.99929 * 9 7 2
25 25 H 1.09003 * 109.47043 * 299.99814 * 9 7 2
26 26 H 0.96999 * 120.00377 * 359.97438 * 10 9 7
27 27 H 0.96991 * 119.99677 * 5.70271 * 13 11 10
28 28 H 1.08000 * 119.95804 * 359.97438 * 15 14 13
29 29 H 1.07994 * 119.79786 * 179.97438 * 16 15 14
30 30 H 1.08005 * 119.82994 * 180.02562 * 17 16 15
31 31 H 1.08007 * 120.03966 * 179.74857 * 18 17 16
32 32 H 0.96998 * 119.99857 * 0.02562 * 21 20 19
33 33 H 0.96999 * 120.00228 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0462 -1.4002
5 1 1.4465 2.6527 0.6998
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 7 2.2029 -3.6127 0.0018
11 6 1.7537 -4.8833 0.0015
12 8 0.5584 -5.1056 0.0006
13 7 2.6295 -5.9078 0.0021
14 6 2.1698 -7.2170 -0.1182
15 6 0.9571 -7.4762 -0.7428
16 6 0.5037 -8.7743 -0.8614
17 6 1.2526 -9.8271 -0.3606
18 6 2.4585 -9.5891 0.2619
19 6 2.9300 -8.2804 0.3904
20 6 4.2199 -8.0186 1.0564
21 7 4.9980 -9.0475 1.4467
22 8 4.5812 -6.8743 1.2532
23 1 -0.4850 0.8401 -0.0004
24 1 0.6247 -2.5571 -0.8896
25 1 0.6240 -2.5567 0.8903
26 1 3.1566 -3.4355 0.0021
27 1 3.5799 -5.7333 0.0862
28 1 0.3680 -6.6610 -1.1362
29 1 -0.4404 -8.9707 -1.3476
30 1 0.8892 -10.8395 -0.4589
31 1 3.0365 -10.4130 0.6541
32 1 4.7099 -9.9602 1.2894
33 1 5.8460 -8.8753 1.8849
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000243476253.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:27:15
Heat of formation + Delta-G solvation = -66.117739 kcal
Electronic energy + Delta-G solvation = -19006.380679 eV
Core-core repulsion = 15837.892533 eV
Total energy + Delta-G solvation = -3168.488146 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.106 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-42.01890 -40.56596 -39.02260 -36.42952 -35.87331 -34.74493 -34.36550 -31.85226
-30.83112 -28.94814 -25.26164 -24.94032 -23.55660 -21.94074 -21.77306 -19.77135
-19.22983 -18.34314 -17.99442 -17.78080 -16.86280 -16.75776 -16.20233 -15.99015
-15.79486 -15.47470 -15.01347 -14.95194 -14.43483 -14.15370 -14.05103 -13.62811
-13.03511 -12.92638 -12.73296 -12.55964 -12.23247 -11.66874 -11.51114 -11.26768
-10.91259 -10.82280 -10.75514 -9.98284 -9.95652 -9.01396 -8.30961 -6.47666
-0.16872 0.39958 1.41746 1.45034 1.55704 1.68937 1.84566 2.05202
2.37682 2.52166 2.93220 3.03927 3.32725 3.83241 3.87993 4.14023
4.41022 4.46960 4.55430 4.90273 5.00583 5.15992 5.21283 5.31265
5.40696 5.51207 5.55096 5.63625 5.78928 5.85166 6.00958 6.15549
6.41395 6.62026 7.05494 7.21471 7.28799 7.50054 8.81408
Molecular weight = 263.11amu
Principal moments of inertia in cm(-1)
A = 0.031102 B = 0.004277 C = 0.003800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 900.057875 B = 6545.252938 C = 7366.561788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.007 3.993
3 Si 0.987 3.013
4 H -0.269 1.269
5 H -0.281 1.281
6 H -0.259 1.259
7 C -0.560 4.560
8 H 0.080 0.920
9 C 0.285 3.715
10 N -0.716 5.716
11 C 0.688 3.312
12 O -0.619 6.619
13 N -0.668 5.668
14 C 0.207 3.793
15 C -0.178 4.178
16 C -0.065 4.065
17 C -0.147 4.147
18 C -0.047 4.047
19 C -0.203 4.203
20 C 0.565 3.435
21 N -0.821 5.821
22 O -0.590 6.590
23 H 0.270 0.730
24 H -0.006 1.006
25 H -0.010 1.010
26 H 0.404 0.596
27 H 0.422 0.578
28 H 0.118 0.882
29 H 0.149 0.851
30 H 0.171 0.829
31 H 0.177 0.823
32 H 0.419 0.581
33 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.770 -24.250 -0.056 26.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.193 4.193
3 Si 0.810 3.190
4 H -0.194 1.194
5 H -0.206 1.206
6 H -0.183 1.183
7 C -0.597 4.597
8 H 0.098 0.902
9 C 0.162 3.838
10 N -0.368 5.368
11 C 0.388 3.612
12 O -0.500 6.500
13 N -0.319 5.319
14 C 0.107 3.893
15 C -0.199 4.199
16 C -0.084 4.084
17 C -0.165 4.165
18 C -0.066 4.066
19 C -0.210 4.210
20 C 0.353 3.647
21 N -0.385 5.385
22 O -0.472 6.472
23 H 0.079 0.921
24 H 0.012 0.988
25 H 0.008 0.992
26 H 0.239 0.761
27 H 0.266 0.734
28 H 0.136 0.864
29 H 0.167 0.833
30 H 0.189 0.811
31 H 0.194 0.806
32 H 0.252 0.748
33 H 0.247 0.753
Dipole moment (debyes) X Y Z Total
from point charges 8.693 -23.440 0.003 25.000
hybrid contribution 0.843 1.168 0.139 1.447
sum 9.536 -22.272 0.142 24.228
Atomic orbital electron populations
1.70132 1.08174 1.28689 1.49662 1.26042 0.95826 1.03761 0.93662
0.85123 0.78364 0.76819 0.78689 1.19394 1.20613 1.18274 1.21575
0.94247 0.90507 1.53405 0.90152 1.18521 0.87943 0.82872 0.94460
1.45434 1.11243 1.03706 1.76437 1.16328 0.85059 0.81650 0.78125
1.90803 1.15746 1.84353 1.59092 1.43005 1.11504 1.03432 1.73982
1.17989 0.94553 0.82699 0.94023 1.21470 0.96696 0.99360 1.02367
1.21583 0.99993 0.90881 0.95912 1.21474 0.94722 1.00482 0.99836
1.21541 0.96118 0.93739 0.95195 1.19682 0.97945 0.94531 1.08795
1.18256 0.84173 0.84982 0.77296 1.43414 1.23729 1.09198 1.62195
1.90632 1.74785 1.23330 1.58449 0.92086 0.98802 0.99239 0.76131
0.73405 0.86403 0.83316 0.81109 0.80589 0.74755 0.75338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16
2 C 0.01 0.40 5.46 84.66 0.46 0.86 16
3 Si 0.99 43.68 29.54 68.60 2.03 45.71 16
4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16
6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16
7 C -0.56 -31.96 9.28 25.60 0.24 -31.72 16
8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16
9 C 0.28 16.57 5.43 85.63 0.46 17.03 16
10 N -0.72 -34.48 5.55 -482.31 -2.68 -37.16 16
11 C 0.69 32.49 8.36 179.05 1.50 33.98 16
12 O -0.62 -33.22 13.53 -3.98 -0.05 -33.28 16
13 N -0.67 -25.70 4.86 -316.62 -1.54 -27.24 16
14 C 0.21 6.94 6.43 38.60 0.25 7.19 16
15 C -0.18 -5.87 8.70 22.36 0.19 -5.68 16
16 C -0.06 -1.44 10.03 22.29 0.22 -1.21 16
17 C -0.15 -2.14 10.02 22.24 0.22 -1.92 16
18 C -0.05 -0.68 9.52 22.51 0.21 -0.47 16
19 C -0.20 -4.93 5.89 -19.99 -0.12 -5.05 16
20 C 0.57 13.28 8.02 86.69 0.69 13.97 16
21 N -0.82 -9.26 8.82 -175.83 -1.55 -10.82 16
22 O -0.59 -19.12 14.65 -4.02 -0.06 -19.18 16
23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16
24 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16
25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16
26 H 0.40 16.99 8.34 -92.71 -0.77 16.21 16
27 H 0.42 15.22 6.03 -92.72 -0.56 14.66 16
28 H 0.12 4.80 5.81 -2.91 -0.02 4.78 16
29 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16
30 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16
31 H 0.18 0.67 6.44 -2.91 -0.02 0.65 16
32 H 0.42 1.43 6.89 -92.71 -0.64 0.79 16
33 H 0.41 3.72 8.93 -92.71 -0.83 2.89 16
Total: -1.00 -81.93 289.43 -0.82 -82.75
By element:
Atomic # 1 Polarization: 30.62 SS G_CDS: -1.59 Total: 29.03 kcal
Atomic # 6 Polarization: 22.65 SS G_CDS: 4.34 Total: 26.99 kcal
Atomic # 7 Polarization: -126.53 SS G_CDS: -5.48 Total: -132.02 kcal
Atomic # 8 Polarization: -52.34 SS G_CDS: -0.11 Total: -52.45 kcal
Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal
Total: -81.93 -0.82 -82.75 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000243476253.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.628 kcal
(2) G-P(sol) polarization free energy of solvation -81.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.298 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds