Wall clock time and date at job start Mon Mar 30 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48505 * 109.46555 * 269.99524 * 3 2 1 5 5 H 1.48502 * 109.47096 * 29.99021 * 3 2 1 6 6 H 1.48496 * 109.47309 * 149.99422 * 3 2 1 7 7 C 1.37878 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00044 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00058 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00236 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00236 * 179.97438 * 11 10 9 14 14 C 1.39274 * 119.99771 * 185.70980 * 13 11 10 15 15 C 1.38856 * 120.17332 * 25.25445 * 14 13 11 16 16 C 1.38009 * 120.07632 * 179.97438 * 15 14 13 17 17 C 1.38570 * 120.40184 * 359.95970 * 16 15 14 18 18 C 1.37784 * 120.33461 * 0.02562 * 17 16 15 19 19 C 1.39697 * 119.92110 * 0.02562 * 18 17 16 20 20 C 1.47509 * 120.19730 * 179.97438 * 19 18 17 21 21 N 1.34773 * 120.00289 * 5.34540 * 20 19 18 22 22 O 1.21597 * 119.99596 * 185.35028 * 20 19 18 23 23 H 0.97002 * 119.99971 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47159 * 59.99929 * 9 7 2 25 25 H 1.09003 * 109.47043 * 299.99814 * 9 7 2 26 26 H 0.96999 * 120.00377 * 359.97438 * 10 9 7 27 27 H 0.96991 * 119.99677 * 5.70271 * 13 11 10 28 28 H 1.08000 * 119.95804 * 359.97438 * 15 14 13 29 29 H 1.07994 * 119.79786 * 179.97438 * 16 15 14 30 30 H 1.08005 * 119.82994 * 180.02562 * 17 16 15 31 31 H 1.08007 * 120.03966 * 179.74857 * 18 17 16 32 32 H 0.96998 * 119.99857 * 0.02562 * 21 20 19 33 33 H 0.96999 * 120.00228 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7537 -4.8833 0.0015 12 8 0.5584 -5.1056 0.0006 13 7 2.6295 -5.9078 0.0021 14 6 2.1698 -7.2170 -0.1182 15 6 0.9571 -7.4762 -0.7428 16 6 0.5037 -8.7743 -0.8614 17 6 1.2526 -9.8271 -0.3606 18 6 2.4585 -9.5891 0.2619 19 6 2.9300 -8.2804 0.3904 20 6 4.2199 -8.0186 1.0564 21 7 4.9980 -9.0475 1.4467 22 8 4.5812 -6.8743 1.2532 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0021 27 1 3.5799 -5.7333 0.0862 28 1 0.3680 -6.6610 -1.1362 29 1 -0.4404 -8.9707 -1.3476 30 1 0.8892 -10.8395 -0.4589 31 1 3.0365 -10.4130 0.6541 32 1 4.7099 -9.9602 1.2894 33 1 5.8460 -8.8753 1.8849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243476253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:15 Heat of formation + Delta-G solvation = -66.117739 kcal Electronic energy + Delta-G solvation = -19006.380679 eV Core-core repulsion = 15837.892533 eV Total energy + Delta-G solvation = -3168.488146 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.01890 -40.56596 -39.02260 -36.42952 -35.87331 -34.74493 -34.36550 -31.85226 -30.83112 -28.94814 -25.26164 -24.94032 -23.55660 -21.94074 -21.77306 -19.77135 -19.22983 -18.34314 -17.99442 -17.78080 -16.86280 -16.75776 -16.20233 -15.99015 -15.79486 -15.47470 -15.01347 -14.95194 -14.43483 -14.15370 -14.05103 -13.62811 -13.03511 -12.92638 -12.73296 -12.55964 -12.23247 -11.66874 -11.51114 -11.26768 -10.91259 -10.82280 -10.75514 -9.98284 -9.95652 -9.01396 -8.30961 -6.47666 -0.16872 0.39958 1.41746 1.45034 1.55704 1.68937 1.84566 2.05202 2.37682 2.52166 2.93220 3.03927 3.32725 3.83241 3.87993 4.14023 4.41022 4.46960 4.55430 4.90273 5.00583 5.15992 5.21283 5.31265 5.40696 5.51207 5.55096 5.63625 5.78928 5.85166 6.00958 6.15549 6.41395 6.62026 7.05494 7.21471 7.28799 7.50054 8.81408 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.031102 B = 0.004277 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.057875 B = 6545.252938 C = 7366.561788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.987 3.013 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.560 4.560 8 H 0.080 0.920 9 C 0.285 3.715 10 N -0.716 5.716 11 C 0.688 3.312 12 O -0.619 6.619 13 N -0.668 5.668 14 C 0.207 3.793 15 C -0.178 4.178 16 C -0.065 4.065 17 C -0.147 4.147 18 C -0.047 4.047 19 C -0.203 4.203 20 C 0.565 3.435 21 N -0.821 5.821 22 O -0.590 6.590 23 H 0.270 0.730 24 H -0.006 1.006 25 H -0.010 1.010 26 H 0.404 0.596 27 H 0.422 0.578 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.419 0.581 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.770 -24.250 -0.056 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.597 4.597 8 H 0.098 0.902 9 C 0.162 3.838 10 N -0.368 5.368 11 C 0.388 3.612 12 O -0.500 6.500 13 N -0.319 5.319 14 C 0.107 3.893 15 C -0.199 4.199 16 C -0.084 4.084 17 C -0.165 4.165 18 C -0.066 4.066 19 C -0.210 4.210 20 C 0.353 3.647 21 N -0.385 5.385 22 O -0.472 6.472 23 H 0.079 0.921 24 H 0.012 0.988 25 H 0.008 0.992 26 H 0.239 0.761 27 H 0.266 0.734 28 H 0.136 0.864 29 H 0.167 0.833 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.252 0.748 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.693 -23.440 0.003 25.000 hybrid contribution 0.843 1.168 0.139 1.447 sum 9.536 -22.272 0.142 24.228 Atomic orbital electron populations 1.70132 1.08174 1.28689 1.49662 1.26042 0.95826 1.03761 0.93662 0.85123 0.78364 0.76819 0.78689 1.19394 1.20613 1.18274 1.21575 0.94247 0.90507 1.53405 0.90152 1.18521 0.87943 0.82872 0.94460 1.45434 1.11243 1.03706 1.76437 1.16328 0.85059 0.81650 0.78125 1.90803 1.15746 1.84353 1.59092 1.43005 1.11504 1.03432 1.73982 1.17989 0.94553 0.82699 0.94023 1.21470 0.96696 0.99360 1.02367 1.21583 0.99993 0.90881 0.95912 1.21474 0.94722 1.00482 0.99836 1.21541 0.96118 0.93739 0.95195 1.19682 0.97945 0.94531 1.08795 1.18256 0.84173 0.84982 0.77296 1.43414 1.23729 1.09198 1.62195 1.90632 1.74785 1.23330 1.58449 0.92086 0.98802 0.99239 0.76131 0.73405 0.86403 0.83316 0.81109 0.80589 0.74755 0.75338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.99 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.56 -31.96 9.28 25.60 0.24 -31.72 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.28 16.57 5.43 85.63 0.46 17.03 16 10 N -0.72 -34.48 5.55 -482.31 -2.68 -37.16 16 11 C 0.69 32.49 8.36 179.05 1.50 33.98 16 12 O -0.62 -33.22 13.53 -3.98 -0.05 -33.28 16 13 N -0.67 -25.70 4.86 -316.62 -1.54 -27.24 16 14 C 0.21 6.94 6.43 38.60 0.25 7.19 16 15 C -0.18 -5.87 8.70 22.36 0.19 -5.68 16 16 C -0.06 -1.44 10.03 22.29 0.22 -1.21 16 17 C -0.15 -2.14 10.02 22.24 0.22 -1.92 16 18 C -0.05 -0.68 9.52 22.51 0.21 -0.47 16 19 C -0.20 -4.93 5.89 -19.99 -0.12 -5.05 16 20 C 0.57 13.28 8.02 86.69 0.69 13.97 16 21 N -0.82 -9.26 8.82 -175.83 -1.55 -10.82 16 22 O -0.59 -19.12 14.65 -4.02 -0.06 -19.18 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H 0.40 16.99 8.34 -92.71 -0.77 16.21 16 27 H 0.42 15.22 6.03 -92.72 -0.56 14.66 16 28 H 0.12 4.80 5.81 -2.91 -0.02 4.78 16 29 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 31 H 0.18 0.67 6.44 -2.91 -0.02 0.65 16 32 H 0.42 1.43 6.89 -92.71 -0.64 0.79 16 33 H 0.41 3.72 8.93 -92.71 -0.83 2.89 16 Total: -1.00 -81.93 289.43 -0.82 -82.75 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -1.59 Total: 29.03 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 4.34 Total: 26.99 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -5.48 Total: -132.02 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.11 Total: -52.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -81.93 -0.82 -82.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243476253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.628 kcal (2) G-P(sol) polarization free energy of solvation -81.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds