Wall clock time and date at job start Mon Mar 30 2020 05:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47301 * 2 1 4 4 C 1.46905 * 110.99636 * 72.63724 * 3 2 1 5 5 C 1.50701 * 109.47166 * 280.30068 * 4 3 2 6 6 H 1.07996 * 120.00230 * 354.43915 * 5 4 3 7 7 C 1.37878 * 119.99771 * 174.43593 * 5 4 3 8 8 N 1.31513 * 119.99617 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00077 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46912 * 90.00135 * 9 7 5 11 11 H 1.48499 * 109.47408 * 210.00017 * 9 7 5 12 12 H 1.48501 * 109.47392 * 330.00415 * 9 7 5 13 13 C 1.46901 * 110.99926 * 196.59196 * 3 2 1 14 14 H 1.09000 * 109.64320 * 200.03847 * 13 3 2 15 15 C 1.55095 * 109.65314 * 320.47864 * 13 3 2 16 16 S 1.83838 * 101.18915 * 161.59053 * 15 13 3 17 17 O 1.42101 * 109.61365 * 77.09966 * 16 15 13 18 18 O 1.42102 * 109.61365 * 211.05054 * 16 15 13 19 19 C 1.83237 * 95.32181 * 324.07494 * 16 15 13 20 20 C 1.52967 * 109.55067 * 79.65767 * 13 3 2 21 21 H 1.08991 * 108.93492 * 89.55659 * 20 13 3 22 22 O 1.42894 * 108.93292 * 331.02176 * 20 13 3 23 23 H 1.08999 * 109.47326 * 165.94347 * 1 2 3 24 24 H 1.09007 * 109.46740 * 285.94954 * 1 2 3 25 25 H 1.08994 * 109.46672 * 45.94215 * 1 2 3 26 26 H 1.09003 * 109.46738 * 240.00385 * 2 1 3 27 27 H 1.09002 * 109.47142 * 120.00363 * 2 1 3 28 28 H 1.09001 * 109.46795 * 40.30688 * 4 3 2 29 29 H 1.09000 * 109.46562 * 160.30372 * 4 3 2 30 30 H 0.96999 * 119.99633 * 179.97438 * 8 7 5 31 31 H 1.09003 * 111.08204 * 279.57318 * 15 13 3 32 32 H 1.09000 * 111.07820 * 43.61149 * 15 13 3 33 33 H 1.08996 * 110.27161 * 261.33202 * 19 16 15 34 34 H 1.09004 * 110.34885 * 139.30716 * 19 16 15 35 35 H 0.96699 * 114.00215 * 180.02562 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.8094 2.0177 1.3090 5 6 0.3748 2.4642 1.4264 6 1 -0.2889 2.3770 0.5789 7 6 -0.0902 2.9841 2.6157 8 7 -1.3422 3.3733 2.7182 9 14 1.0576 3.1342 4.0817 10 1 1.7281 4.4589 4.0517 11 1 0.2763 3.0032 5.3377 12 1 2.0811 2.0600 4.0211 13 6 3.4344 1.4431 -0.3916 14 1 3.8698 2.3834 -0.0535 15 6 4.2011 0.2546 0.2448 16 16 5.7114 0.2028 -0.8021 17 8 6.5971 1.2439 -0.4136 18 8 6.1795 -1.1355 -0.8981 19 6 4.8578 0.6688 -2.3551 20 6 3.5488 1.3410 -1.9136 21 1 3.5048 2.3432 -2.3396 22 8 2.4464 0.5803 -2.4114 23 1 -0.3634 -0.9969 -0.2496 24 1 -0.3633 0.2824 0.9882 25 1 -0.3632 0.7146 -0.7385 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 2.0326 1.3007 2.0991 29 1 2.4677 2.8811 1.4052 30 1 -1.6695 3.7387 3.5550 31 1 4.4521 0.4619 1.2851 32 1 3.6318 -0.6708 0.1577 33 1 4.6444 -0.2193 -2.9499 34 1 5.4671 1.3684 -2.9273 35 1 2.4467 0.4696 -3.3720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252432369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:49 Heat of formation + Delta-G solvation = -91.206335 kcal Electronic energy + Delta-G solvation = -19308.880860 eV Core-core repulsion = 16242.455990 eV Total energy + Delta-G solvation = -3066.424869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.12023 -37.14942 -36.19476 -36.09391 -33.10816 -32.16875 -29.88293 -29.20789 -27.01773 -24.82844 -22.35217 -21.13937 -19.49914 -18.98864 -17.72262 -17.15233 -16.44609 -15.97806 -15.81854 -15.18254 -14.81452 -14.48606 -14.05999 -13.83136 -13.50098 -13.03270 -12.70458 -12.48108 -12.28622 -12.14858 -11.79384 -11.75888 -11.41389 -11.26251 -11.05941 -10.90986 -10.67121 -10.45665 -10.28023 -10.11161 -9.94293 -9.54013 -9.19828 -8.55112 -7.48229 -6.05596 -4.01067 -0.06747 2.36765 3.25659 3.33137 3.34653 3.44661 3.80720 4.02554 4.19541 4.39894 4.51169 4.62191 4.71211 4.93780 5.10874 5.24413 5.38341 5.50396 5.57276 5.87523 6.02012 6.14032 6.40918 6.60306 6.71794 6.82736 7.04343 7.38004 7.55731 7.65308 7.85769 7.97746 8.63978 9.07206 9.55732 11.06949 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026682 B = 0.006780 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.154556 B = 4128.949675 C = 4701.369028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 N -0.489 5.489 4 C 0.152 3.848 5 C -0.501 4.501 6 H 0.090 0.910 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.868 3.132 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.085 3.915 14 H 0.110 0.890 15 C -0.613 4.613 16 S 2.382 3.618 17 O -0.935 6.935 18 O -0.943 6.943 19 C -0.628 4.628 20 C 0.129 3.871 21 H 0.081 0.919 22 O -0.529 6.529 23 H 0.030 0.970 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.019 0.981 28 H -0.003 1.003 29 H 0.020 0.980 30 H 0.263 0.737 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.182 -6.357 -9.946 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 N -0.212 5.212 4 C 0.026 3.974 5 C -0.539 4.539 6 H 0.108 0.892 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.695 3.305 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.027 4.027 14 H 0.128 0.872 15 C -0.746 4.746 16 S 2.566 3.434 17 O -0.932 6.932 18 O -0.940 6.940 19 C -0.758 4.758 20 C 0.067 3.933 21 H 0.099 0.901 22 O -0.333 6.333 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.037 0.963 28 H 0.015 0.985 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.582 -6.245 -9.327 16.128 hybrid contribution 0.440 -0.038 0.723 0.847 sum 12.022 -6.283 -8.604 16.063 Atomic orbital electron populations 1.21825 0.94479 0.98802 1.04369 1.22168 0.97010 0.88298 0.98888 1.61954 1.09716 1.17644 1.31861 1.20458 0.98949 0.93448 0.84539 1.21112 0.93870 1.39699 0.99217 0.89237 1.24893 0.94855 0.95403 0.98265 1.69880 1.14486 1.43105 1.26417 0.86987 0.81451 0.78916 0.83126 1.20218 1.21240 1.19352 1.22496 0.93123 0.96016 0.91070 0.87234 1.31343 1.19466 1.09828 1.13921 1.09209 0.78530 0.75373 0.80322 1.93628 1.61036 1.57713 1.80836 1.93594 1.79565 1.35386 1.85482 1.31221 1.11558 1.11842 1.21203 1.21833 0.82235 0.95002 0.94202 0.90084 1.86843 1.46269 1.74423 1.25756 0.95087 0.90523 0.92059 0.90163 0.96330 0.98541 0.96184 0.92720 0.84408 0.83460 0.83757 0.84395 0.78592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.57 37.16 0.32 -2.34 16 2 C 0.06 1.13 3.60 -3.82 -0.01 1.11 16 3 N -0.49 -9.25 4.01 -226.77 -0.91 -10.15 16 4 C 0.15 3.45 3.78 -4.97 -0.02 3.43 16 5 C -0.50 -13.46 7.56 -34.44 -0.26 -13.72 16 6 H 0.09 2.62 6.61 -52.49 -0.35 2.27 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 9 Si 0.87 20.92 27.58 -169.99 -4.69 16.23 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.22 6.38 56.52 0.36 -5.86 16 13 C 0.09 1.24 2.53 -66.62 -0.17 1.07 16 14 H 0.11 1.54 7.47 -51.93 -0.39 1.15 16 15 C -0.61 -7.73 6.24 38.27 0.24 -7.50 16 16 S 2.38 26.99 6.05 -107.50 -0.65 26.34 16 17 O -0.94 -13.48 18.16 -57.67 -1.05 -14.53 16 18 O -0.94 -13.45 18.16 -57.67 -1.05 -14.50 16 19 C -0.63 -5.14 7.05 37.48 0.26 -4.88 16 20 C 0.13 1.42 3.84 -26.42 -0.10 1.32 16 21 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 22 O -0.53 -6.11 9.59 -35.23 -0.34 -6.44 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.73 6.45 -51.92 -0.33 1.39 16 25 H 0.06 1.26 7.65 -51.93 -0.40 0.86 16 26 H 0.08 1.24 5.19 -51.93 -0.27 0.97 16 27 H 0.02 0.33 6.75 -51.93 -0.35 -0.02 16 28 H 0.00 -0.07 6.36 -51.93 -0.33 -0.40 16 29 H 0.02 0.45 7.17 -51.93 -0.37 0.08 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.14 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.15 1.80 5.67 -51.93 -0.29 1.50 16 33 H 0.14 0.92 7.90 -51.93 -0.41 0.51 16 34 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.37 2.54 9.02 45.56 0.41 2.95 16 LS Contribution 283.86 15.07 4.28 4.28 Total: -1.00 -35.18 283.86 -7.42 -42.60 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.95 Total: 1.94 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 0.16 Total: -19.72 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.14 Total: -36.20 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -2.43 Total: -35.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.69 Total: 16.23 kcal Atomic # 16 Polarization: 26.99 SS G_CDS: -0.65 Total: 26.34 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -35.18 -7.42 -42.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252432369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.607 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds