Wall clock time and date at job start Mon Mar 30 2020 05:04:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46899 * 109.47301 * 2 1
4 4 C 1.46905 * 110.99636 * 72.63724 * 3 2 1
5 5 C 1.50701 * 109.47166 * 280.30068 * 4 3 2
6 6 H 1.07996 * 120.00230 * 354.43915 * 5 4 3
7 7 C 1.37878 * 119.99771 * 174.43593 * 5 4 3
8 8 N 1.31513 * 119.99617 * 180.02562 * 7 5 4
9 9 Si 1.86795 * 120.00077 * 359.97438 * 7 5 4
10 10 H 1.48499 * 109.46912 * 90.00135 * 9 7 5
11 11 H 1.48499 * 109.47408 * 210.00017 * 9 7 5
12 12 H 1.48501 * 109.47392 * 330.00415 * 9 7 5
13 13 C 1.46901 * 110.99926 * 196.59196 * 3 2 1
14 14 H 1.09000 * 109.64320 * 200.03847 * 13 3 2
15 15 C 1.55095 * 109.65314 * 320.47864 * 13 3 2
16 16 S 1.83838 * 101.18915 * 161.59053 * 15 13 3
17 17 O 1.42101 * 109.61365 * 77.09966 * 16 15 13
18 18 O 1.42102 * 109.61365 * 211.05054 * 16 15 13
19 19 C 1.83237 * 95.32181 * 324.07494 * 16 15 13
20 20 C 1.52967 * 109.55067 * 79.65767 * 13 3 2
21 21 H 1.08991 * 108.93492 * 89.55659 * 20 13 3
22 22 O 1.42894 * 108.93292 * 331.02176 * 20 13 3
23 23 H 1.08999 * 109.47326 * 165.94347 * 1 2 3
24 24 H 1.09007 * 109.46740 * 285.94954 * 1 2 3
25 25 H 1.08994 * 109.46672 * 45.94215 * 1 2 3
26 26 H 1.09003 * 109.46738 * 240.00385 * 2 1 3
27 27 H 1.09002 * 109.47142 * 120.00363 * 2 1 3
28 28 H 1.09001 * 109.46795 * 40.30688 * 4 3 2
29 29 H 1.09000 * 109.46562 * 160.30372 * 4 3 2
30 30 H 0.96999 * 119.99633 * 179.97438 * 8 7 5
31 31 H 1.09003 * 111.08204 * 279.57318 * 15 13 3
32 32 H 1.09000 * 111.07820 * 43.61149 * 15 13 3
33 33 H 1.08996 * 110.27161 * 261.33202 * 19 16 15
34 34 H 1.09004 * 110.34885 * 139.30716 * 19 16 15
35 35 H 0.96699 * 114.00215 * 180.02562 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0198 1.3850 0.0000
4 6 1.8094 2.0177 1.3090
5 6 0.3748 2.4642 1.4264
6 1 -0.2889 2.3770 0.5789
7 6 -0.0902 2.9841 2.6157
8 7 -1.3422 3.3733 2.7182
9 14 1.0576 3.1342 4.0817
10 1 1.7281 4.4589 4.0517
11 1 0.2763 3.0032 5.3377
12 1 2.0811 2.0600 4.0211
13 6 3.4344 1.4431 -0.3916
14 1 3.8698 2.3834 -0.0535
15 6 4.2011 0.2546 0.2448
16 16 5.7114 0.2028 -0.8021
17 8 6.5971 1.2439 -0.4136
18 8 6.1795 -1.1355 -0.8981
19 6 4.8578 0.6688 -2.3551
20 6 3.5488 1.3410 -1.9136
21 1 3.5048 2.3432 -2.3396
22 8 2.4464 0.5803 -2.4114
23 1 -0.3634 -0.9969 -0.2496
24 1 -0.3633 0.2824 0.9882
25 1 -0.3632 0.7146 -0.7385
26 1 1.8933 -0.5138 -0.8901
27 1 1.8934 -0.5139 0.8900
28 1 2.0326 1.3007 2.0991
29 1 2.4677 2.8811 1.4052
30 1 -1.6695 3.7387 3.5550
31 1 4.4521 0.4619 1.2851
32 1 3.6318 -0.6708 0.1577
33 1 4.6444 -0.2193 -2.9499
34 1 5.4671 1.3684 -2.9273
35 1 2.4467 0.4696 -3.3720
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000252432369.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:04:49
Heat of formation + Delta-G solvation = -91.206335 kcal
Electronic energy + Delta-G solvation = -19308.880860 eV
Core-core repulsion = 16242.455990 eV
Total energy + Delta-G solvation = -3066.424869 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.12023 -37.14942 -36.19476 -36.09391 -33.10816 -32.16875 -29.88293 -29.20789
-27.01773 -24.82844 -22.35217 -21.13937 -19.49914 -18.98864 -17.72262 -17.15233
-16.44609 -15.97806 -15.81854 -15.18254 -14.81452 -14.48606 -14.05999 -13.83136
-13.50098 -13.03270 -12.70458 -12.48108 -12.28622 -12.14858 -11.79384 -11.75888
-11.41389 -11.26251 -11.05941 -10.90986 -10.67121 -10.45665 -10.28023 -10.11161
-9.94293 -9.54013 -9.19828 -8.55112 -7.48229 -6.05596 -4.01067 -0.06747
2.36765 3.25659 3.33137 3.34653 3.44661 3.80720 4.02554 4.19541
4.39894 4.51169 4.62191 4.71211 4.93780 5.10874 5.24413 5.38341
5.50396 5.57276 5.87523 6.02012 6.14032 6.40918 6.60306 6.71794
6.82736 7.04343 7.38004 7.55731 7.65308 7.85769 7.97746 8.63978
9.07206 9.55732 11.06949
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.026682 B = 0.006780 C = 0.005954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.154556 B = 4128.949675 C = 4701.369028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.064 3.936
3 N -0.489 5.489
4 C 0.152 3.848
5 C -0.501 4.501
6 H 0.090 0.910
7 C 0.067 3.933
8 N -0.900 5.900
9 Si 0.868 3.132
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.269 1.269
13 C 0.085 3.915
14 H 0.110 0.890
15 C -0.613 4.613
16 S 2.382 3.618
17 O -0.935 6.935
18 O -0.943 6.943
19 C -0.628 4.628
20 C 0.129 3.871
21 H 0.081 0.919
22 O -0.529 6.529
23 H 0.030 0.970
24 H 0.076 0.924
25 H 0.060 0.940
26 H 0.080 0.920
27 H 0.019 0.981
28 H -0.003 1.003
29 H 0.020 0.980
30 H 0.263 0.737
31 H 0.138 0.862
32 H 0.147 0.853
33 H 0.144 0.856
34 H 0.138 0.862
35 H 0.367 0.633
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.182 -6.357 -9.946 16.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.064 4.064
3 N -0.212 5.212
4 C 0.026 3.974
5 C -0.539 4.539
6 H 0.108 0.892
7 C -0.134 4.134
8 N -0.539 5.539
9 Si 0.695 3.305
10 H -0.202 1.202
11 H -0.212 1.212
12 H -0.194 1.194
13 C -0.027 4.027
14 H 0.128 0.872
15 C -0.746 4.746
16 S 2.566 3.434
17 O -0.932 6.932
18 O -0.940 6.940
19 C -0.758 4.758
20 C 0.067 3.933
21 H 0.099 0.901
22 O -0.333 6.333
23 H 0.049 0.951
24 H 0.095 0.905
25 H 0.079 0.921
26 H 0.098 0.902
27 H 0.037 0.963
28 H 0.015 0.985
29 H 0.038 0.962
30 H 0.073 0.927
31 H 0.156 0.844
32 H 0.165 0.835
33 H 0.162 0.838
34 H 0.156 0.844
35 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges 11.582 -6.245 -9.327 16.128
hybrid contribution 0.440 -0.038 0.723 0.847
sum 12.022 -6.283 -8.604 16.063
Atomic orbital electron populations
1.21825 0.94479 0.98802 1.04369 1.22168 0.97010 0.88298 0.98888
1.61954 1.09716 1.17644 1.31861 1.20458 0.98949 0.93448 0.84539
1.21112 0.93870 1.39699 0.99217 0.89237 1.24893 0.94855 0.95403
0.98265 1.69880 1.14486 1.43105 1.26417 0.86987 0.81451 0.78916
0.83126 1.20218 1.21240 1.19352 1.22496 0.93123 0.96016 0.91070
0.87234 1.31343 1.19466 1.09828 1.13921 1.09209 0.78530 0.75373
0.80322 1.93628 1.61036 1.57713 1.80836 1.93594 1.79565 1.35386
1.85482 1.31221 1.11558 1.11842 1.21203 1.21833 0.82235 0.95002
0.94202 0.90084 1.86843 1.46269 1.74423 1.25756 0.95087 0.90523
0.92059 0.90163 0.96330 0.98541 0.96184 0.92720 0.84408 0.83460
0.83757 0.84395 0.78592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.66 8.57 37.16 0.32 -2.34 16
2 C 0.06 1.13 3.60 -3.82 -0.01 1.11 16
3 N -0.49 -9.25 4.01 -226.77 -0.91 -10.15 16
4 C 0.15 3.45 3.78 -4.97 -0.02 3.43 16
5 C -0.50 -13.46 7.56 -34.44 -0.26 -13.72 16
6 H 0.09 2.62 6.61 -52.49 -0.35 2.27 16
7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16
8 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16
9 Si 0.87 20.92 27.58 -169.99 -4.69 16.23 16
10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
12 H -0.27 -6.22 6.38 56.52 0.36 -5.86 16
13 C 0.09 1.24 2.53 -66.62 -0.17 1.07 16
14 H 0.11 1.54 7.47 -51.93 -0.39 1.15 16
15 C -0.61 -7.73 6.24 38.27 0.24 -7.50 16
16 S 2.38 26.99 6.05 -107.50 -0.65 26.34 16
17 O -0.94 -13.48 18.16 -57.67 -1.05 -14.53 16
18 O -0.94 -13.45 18.16 -57.67 -1.05 -14.50 16
19 C -0.63 -5.14 7.05 37.48 0.26 -4.88 16
20 C 0.13 1.42 3.84 -26.42 -0.10 1.32 16
21 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
22 O -0.53 -6.11 9.59 -35.23 -0.34 -6.44 16
23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
24 H 0.08 1.73 6.45 -51.92 -0.33 1.39 16
25 H 0.06 1.26 7.65 -51.93 -0.40 0.86 16
26 H 0.08 1.24 5.19 -51.93 -0.27 0.97 16
27 H 0.02 0.33 6.75 -51.93 -0.35 -0.02 16
28 H 0.00 -0.07 6.36 -51.93 -0.33 -0.40 16
29 H 0.02 0.45 7.17 -51.93 -0.37 0.08 16
30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
31 H 0.14 1.69 8.14 -51.93 -0.42 1.27 16
32 H 0.15 1.80 5.67 -51.93 -0.29 1.50 16
33 H 0.14 0.92 7.90 -51.93 -0.41 0.51 16
34 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.37 2.54 9.02 45.56 0.41 2.95 16
LS Contribution 283.86 15.07 4.28 4.28
Total: -1.00 -35.18 283.86 -7.42 -42.60
By element:
Atomic # 1 Polarization: 5.89 SS G_CDS: -3.95 Total: 1.94 kcal
Atomic # 6 Polarization: -19.88 SS G_CDS: 0.16 Total: -19.72 kcal
Atomic # 7 Polarization: -36.06 SS G_CDS: -0.14 Total: -36.20 kcal
Atomic # 8 Polarization: -33.04 SS G_CDS: -2.43 Total: -35.47 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -4.69 Total: 16.23 kcal
Atomic # 16 Polarization: 26.99 SS G_CDS: -0.65 Total: 26.34 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -35.18 -7.42 -42.60 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252432369.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.607 kcal
(2) G-P(sol) polarization free energy of solvation -35.181 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.789 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds