Wall clock time and date at job start Mon Mar 30 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47301 * 2 1 4 4 C 1.46905 * 110.99636 * 72.63724 * 3 2 1 5 5 C 1.50701 * 109.47166 * 280.30068 * 4 3 2 6 6 H 1.07996 * 120.00230 * 354.43915 * 5 4 3 7 7 C 1.37878 * 119.99771 * 174.43593 * 5 4 3 8 8 N 1.31513 * 119.99617 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00077 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46912 * 90.00135 * 9 7 5 11 11 H 1.48499 * 109.47408 * 210.00017 * 9 7 5 12 12 H 1.48501 * 109.47392 * 330.00415 * 9 7 5 13 13 C 1.46901 * 110.99926 * 196.59196 * 3 2 1 14 14 H 1.09000 * 109.64320 * 200.03847 * 13 3 2 15 15 C 1.55095 * 109.65314 * 320.47864 * 13 3 2 16 16 S 1.83838 * 101.18915 * 161.59053 * 15 13 3 17 17 O 1.42101 * 109.61365 * 77.09966 * 16 15 13 18 18 O 1.42102 * 109.61365 * 211.05054 * 16 15 13 19 19 C 1.83237 * 95.32181 * 324.07494 * 16 15 13 20 20 C 1.52967 * 109.55067 * 79.65767 * 13 3 2 21 21 H 1.08991 * 108.93492 * 89.55659 * 20 13 3 22 22 O 1.42894 * 108.93292 * 331.02176 * 20 13 3 23 23 H 1.08999 * 109.47326 * 165.94347 * 1 2 3 24 24 H 1.09007 * 109.46740 * 285.94954 * 1 2 3 25 25 H 1.08994 * 109.46672 * 45.94215 * 1 2 3 26 26 H 1.09003 * 109.46738 * 240.00385 * 2 1 3 27 27 H 1.09002 * 109.47142 * 120.00363 * 2 1 3 28 28 H 1.09001 * 109.46795 * 40.30688 * 4 3 2 29 29 H 1.09000 * 109.46562 * 160.30372 * 4 3 2 30 30 H 0.96999 * 119.99633 * 179.97438 * 8 7 5 31 31 H 1.09003 * 111.08204 * 279.57318 * 15 13 3 32 32 H 1.09000 * 111.07820 * 43.61149 * 15 13 3 33 33 H 1.08996 * 110.27161 * 261.33202 * 19 16 15 34 34 H 1.09004 * 110.34885 * 139.30716 * 19 16 15 35 35 H 0.96699 * 114.00215 * 180.02562 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.8094 2.0177 1.3090 5 6 0.3748 2.4642 1.4264 6 1 -0.2889 2.3770 0.5789 7 6 -0.0902 2.9841 2.6157 8 7 -1.3422 3.3733 2.7182 9 14 1.0576 3.1342 4.0817 10 1 1.7281 4.4589 4.0517 11 1 0.2763 3.0032 5.3377 12 1 2.0811 2.0600 4.0211 13 6 3.4344 1.4431 -0.3916 14 1 3.8698 2.3834 -0.0535 15 6 4.2011 0.2546 0.2448 16 16 5.7114 0.2028 -0.8021 17 8 6.5971 1.2439 -0.4136 18 8 6.1795 -1.1355 -0.8981 19 6 4.8578 0.6688 -2.3551 20 6 3.5488 1.3410 -1.9136 21 1 3.5048 2.3432 -2.3396 22 8 2.4464 0.5803 -2.4114 23 1 -0.3634 -0.9969 -0.2496 24 1 -0.3633 0.2824 0.9882 25 1 -0.3632 0.7146 -0.7385 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 2.0326 1.3007 2.0991 29 1 2.4677 2.8811 1.4052 30 1 -1.6695 3.7387 3.5550 31 1 4.4521 0.4619 1.2851 32 1 3.6318 -0.6708 0.1577 33 1 4.6444 -0.2193 -2.9499 34 1 5.4671 1.3684 -2.9273 35 1 2.4467 0.4696 -3.3720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252432369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:48 Heat of formation + Delta-G solvation = -122.673734 kcal Electronic energy + Delta-G solvation = -19310.245388 eV Core-core repulsion = 16242.455990 eV Total energy + Delta-G solvation = -3067.789398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.25243 -38.15709 -37.37145 -37.10295 -34.75071 -33.65832 -31.27523 -30.49110 -28.56528 -25.92005 -24.07622 -22.44641 -20.81774 -19.93338 -18.90940 -18.64079 -17.70712 -16.95688 -16.76179 -16.50003 -16.22859 -15.72530 -15.41037 -15.16648 -14.88342 -14.43930 -13.98064 -13.79835 -13.35688 -13.29819 -13.17125 -13.08626 -12.84195 -12.78300 -12.40756 -12.21523 -12.02479 -11.93779 -11.82067 -11.63137 -11.22551 -11.05994 -10.75298 -10.63411 -8.95273 -8.20771 -6.19523 -0.95833 1.34284 1.35934 1.44003 1.50120 2.36802 2.54578 2.95421 2.97767 3.12101 3.28582 3.55857 3.70332 3.84252 3.97332 4.23633 4.42787 4.53676 4.62262 4.69048 4.74348 4.84296 4.95317 5.01529 5.10235 5.22001 5.42878 5.62190 5.75487 6.07461 6.46784 6.67626 6.88129 7.10020 7.40905 8.95175 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026682 B = 0.006780 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.154556 B = 4128.949675 C = 4701.369028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.065 3.935 3 N -0.503 5.503 4 C 0.158 3.842 5 C -0.494 4.494 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.932 3.068 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.252 1.252 13 C 0.070 3.930 14 H 0.110 0.890 15 C -0.622 4.622 16 S 2.403 3.597 17 O -0.968 6.968 18 O -0.973 6.973 19 C -0.592 4.592 20 C 0.131 3.869 21 H 0.095 0.905 22 O -0.550 6.550 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.040 0.960 26 H 0.111 0.889 27 H 0.018 0.982 28 H -0.007 1.007 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.382 -7.086 -11.472 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.061 4.061 3 N -0.226 5.226 4 C 0.031 3.969 5 C -0.533 4.533 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.756 3.244 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.176 1.176 13 C -0.041 4.041 14 H 0.128 0.872 15 C -0.752 4.752 16 S 2.589 3.411 17 O -0.965 6.965 18 O -0.970 6.970 19 C -0.725 4.725 20 C 0.070 3.930 21 H 0.113 0.887 22 O -0.358 6.358 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.129 0.871 27 H 0.036 0.964 28 H 0.011 0.989 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.192 0.808 34 H 0.189 0.811 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 13.819 -6.998 -10.852 18.913 hybrid contribution -0.308 0.162 1.038 1.095 sum 13.511 -6.835 -9.814 18.044 Atomic orbital electron populations 1.21702 0.96226 0.99669 1.01129 1.22224 0.95438 0.88146 1.00337 1.61778 1.13312 1.18174 1.29330 1.20230 0.96027 0.93790 0.86826 1.21351 0.95632 1.38417 0.97856 0.92959 1.25723 0.96292 0.95510 1.01479 1.70039 1.16681 1.45154 1.27260 0.85949 0.79629 0.79614 0.79163 1.19295 1.21387 1.17606 1.22714 0.90484 0.97008 0.93942 0.87197 1.31355 1.20398 1.09063 1.14424 1.08484 0.77591 0.74025 0.81002 1.93585 1.62367 1.58364 1.82190 1.93557 1.80175 1.36987 1.86232 1.31040 1.09241 1.13579 1.18645 1.21705 0.83423 0.96191 0.91661 0.88739 1.86738 1.46571 1.74427 1.28096 0.92297 0.94720 0.94037 0.87081 0.96370 0.98944 0.95585 0.92833 0.84728 0.83079 0.80839 0.81074 0.75874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.57 71.98 0.62 -4.45 16 2 C 0.07 2.24 3.60 86.31 0.31 2.55 16 3 N -0.50 -18.53 4.01 -871.35 -3.49 -22.02 16 4 C 0.16 7.15 3.78 85.56 0.32 7.47 16 5 C -0.49 -27.31 7.56 25.60 0.19 -27.12 16 6 H 0.05 3.22 6.61 -2.91 -0.02 3.20 16 7 C 0.01 0.37 5.47 84.66 0.46 0.83 16 8 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16 9 Si 0.93 43.55 27.58 68.60 1.89 45.44 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.25 -10.99 6.38 99.48 0.64 -10.35 16 13 C 0.07 1.88 2.53 45.62 0.12 1.99 16 14 H 0.11 2.88 7.47 -2.39 -0.02 2.87 16 15 C -0.62 -14.43 6.24 72.70 0.45 -13.98 16 16 S 2.40 47.86 6.05 -56.49 -0.34 47.51 16 17 O -0.97 -25.90 18.16 -127.52 -2.32 -28.22 16 18 O -0.97 -25.41 18.16 -127.52 -2.32 -27.72 16 19 C -0.59 -6.68 7.05 72.19 0.51 -6.17 16 20 C 0.13 2.39 3.84 30.79 0.12 2.51 16 21 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 22 O -0.55 -10.57 9.59 -148.98 -1.43 -12.00 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.03 1.61 6.45 -2.38 -0.02 1.59 16 25 H 0.04 1.74 7.65 -2.39 -0.02 1.73 16 26 H 0.11 3.12 5.19 -2.39 -0.01 3.11 16 27 H 0.02 0.62 6.75 -2.39 -0.02 0.61 16 28 H -0.01 -0.33 6.36 -2.39 -0.02 -0.34 16 29 H 0.03 1.14 7.17 -2.39 -0.02 1.13 16 30 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.15 3.36 5.67 -2.39 -0.01 3.34 16 33 H 0.17 1.13 7.90 -2.39 -0.02 1.11 16 34 H 0.17 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.39 3.56 9.02 -74.06 -0.67 2.89 16 Total: -1.00 -78.68 283.86 -4.23 -82.91 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.37 Total: 8.84 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.10 Total: -36.35 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -3.19 Total: -80.42 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -6.06 Total: -67.94 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.89 Total: 45.44 kcal Atomic # 16 Polarization: 47.86 SS G_CDS: -0.34 Total: 47.51 kcal Total: -78.68 -4.23 -82.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252432369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.759 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds