Wall clock time and date at job start Mon Mar 30 2020 05:04:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46899 * 109.47301 * 2 1
4 4 C 1.46905 * 110.99636 * 72.63724 * 3 2 1
5 5 C 1.50701 * 109.47166 * 280.30068 * 4 3 2
6 6 H 1.07996 * 120.00230 * 354.43915 * 5 4 3
7 7 C 1.37878 * 119.99771 * 174.43593 * 5 4 3
8 8 N 1.31513 * 119.99617 * 180.02562 * 7 5 4
9 9 Si 1.86795 * 120.00077 * 359.97438 * 7 5 4
10 10 H 1.48499 * 109.46912 * 90.00135 * 9 7 5
11 11 H 1.48499 * 109.47408 * 210.00017 * 9 7 5
12 12 H 1.48501 * 109.47392 * 330.00415 * 9 7 5
13 13 C 1.46901 * 110.99926 * 196.59196 * 3 2 1
14 14 H 1.09000 * 109.64320 * 200.03847 * 13 3 2
15 15 C 1.55095 * 109.65314 * 320.47864 * 13 3 2
16 16 S 1.83838 * 101.18915 * 161.59053 * 15 13 3
17 17 O 1.42101 * 109.61365 * 77.09966 * 16 15 13
18 18 O 1.42102 * 109.61365 * 211.05054 * 16 15 13
19 19 C 1.83237 * 95.32181 * 324.07494 * 16 15 13
20 20 C 1.52967 * 109.55067 * 79.65767 * 13 3 2
21 21 H 1.08991 * 108.93492 * 89.55659 * 20 13 3
22 22 O 1.42894 * 108.93292 * 331.02176 * 20 13 3
23 23 H 1.08999 * 109.47326 * 165.94347 * 1 2 3
24 24 H 1.09007 * 109.46740 * 285.94954 * 1 2 3
25 25 H 1.08994 * 109.46672 * 45.94215 * 1 2 3
26 26 H 1.09003 * 109.46738 * 240.00385 * 2 1 3
27 27 H 1.09002 * 109.47142 * 120.00363 * 2 1 3
28 28 H 1.09001 * 109.46795 * 40.30688 * 4 3 2
29 29 H 1.09000 * 109.46562 * 160.30372 * 4 3 2
30 30 H 0.96999 * 119.99633 * 179.97438 * 8 7 5
31 31 H 1.09003 * 111.08204 * 279.57318 * 15 13 3
32 32 H 1.09000 * 111.07820 * 43.61149 * 15 13 3
33 33 H 1.08996 * 110.27161 * 261.33202 * 19 16 15
34 34 H 1.09004 * 110.34885 * 139.30716 * 19 16 15
35 35 H 0.96699 * 114.00215 * 180.02562 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0198 1.3850 0.0000
4 6 1.8094 2.0177 1.3090
5 6 0.3748 2.4642 1.4264
6 1 -0.2889 2.3770 0.5789
7 6 -0.0902 2.9841 2.6157
8 7 -1.3422 3.3733 2.7182
9 14 1.0576 3.1342 4.0817
10 1 1.7281 4.4589 4.0517
11 1 0.2763 3.0032 5.3377
12 1 2.0811 2.0600 4.0211
13 6 3.4344 1.4431 -0.3916
14 1 3.8698 2.3834 -0.0535
15 6 4.2011 0.2546 0.2448
16 16 5.7114 0.2028 -0.8021
17 8 6.5971 1.2439 -0.4136
18 8 6.1795 -1.1355 -0.8981
19 6 4.8578 0.6688 -2.3551
20 6 3.5488 1.3410 -1.9136
21 1 3.5048 2.3432 -2.3396
22 8 2.4464 0.5803 -2.4114
23 1 -0.3634 -0.9969 -0.2496
24 1 -0.3633 0.2824 0.9882
25 1 -0.3632 0.7146 -0.7385
26 1 1.8933 -0.5138 -0.8901
27 1 1.8934 -0.5139 0.8900
28 1 2.0326 1.3007 2.0991
29 1 2.4677 2.8811 1.4052
30 1 -1.6695 3.7387 3.5550
31 1 4.4521 0.4619 1.2851
32 1 3.6318 -0.6708 0.1577
33 1 4.6444 -0.2193 -2.9499
34 1 5.4671 1.3684 -2.9273
35 1 2.4467 0.4696 -3.3720
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000252432369.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:04:48
Heat of formation + Delta-G solvation = -122.673734 kcal
Electronic energy + Delta-G solvation = -19310.245388 eV
Core-core repulsion = 16242.455990 eV
Total energy + Delta-G solvation = -3067.789398 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.25243 -38.15709 -37.37145 -37.10295 -34.75071 -33.65832 -31.27523 -30.49110
-28.56528 -25.92005 -24.07622 -22.44641 -20.81774 -19.93338 -18.90940 -18.64079
-17.70712 -16.95688 -16.76179 -16.50003 -16.22859 -15.72530 -15.41037 -15.16648
-14.88342 -14.43930 -13.98064 -13.79835 -13.35688 -13.29819 -13.17125 -13.08626
-12.84195 -12.78300 -12.40756 -12.21523 -12.02479 -11.93779 -11.82067 -11.63137
-11.22551 -11.05994 -10.75298 -10.63411 -8.95273 -8.20771 -6.19523 -0.95833
1.34284 1.35934 1.44003 1.50120 2.36802 2.54578 2.95421 2.97767
3.12101 3.28582 3.55857 3.70332 3.84252 3.97332 4.23633 4.42787
4.53676 4.62262 4.69048 4.74348 4.84296 4.95317 5.01529 5.10235
5.22001 5.42878 5.62190 5.75487 6.07461 6.46784 6.67626 6.88129
7.10020 7.40905 8.95175
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.026682 B = 0.006780 C = 0.005954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.154556 B = 4128.949675 C = 4701.369028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.065 3.935
3 N -0.503 5.503
4 C 0.158 3.842
5 C -0.494 4.494
6 H 0.052 0.948
7 C 0.006 3.994
8 N -0.949 5.949
9 Si 0.932 3.068
10 H -0.268 1.268
11 H -0.288 1.288
12 H -0.252 1.252
13 C 0.070 3.930
14 H 0.110 0.890
15 C -0.622 4.622
16 S 2.403 3.597
17 O -0.968 6.968
18 O -0.973 6.973
19 C -0.592 4.592
20 C 0.131 3.869
21 H 0.095 0.905
22 O -0.550 6.550
23 H 0.058 0.942
24 H 0.034 0.966
25 H 0.040 0.960
26 H 0.111 0.889
27 H 0.018 0.982
28 H -0.007 1.007
29 H 0.026 0.974
30 H 0.263 0.737
31 H 0.134 0.866
32 H 0.151 0.849
33 H 0.174 0.826
34 H 0.171 0.829
35 H 0.391 0.609
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.382 -7.086 -11.472 18.997
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.061 4.061
3 N -0.226 5.226
4 C 0.031 3.969
5 C -0.533 4.533
6 H 0.070 0.930
7 C -0.190 4.190
8 N -0.591 5.591
9 Si 0.756 3.244
10 H -0.193 1.193
11 H -0.214 1.214
12 H -0.176 1.176
13 C -0.041 4.041
14 H 0.128 0.872
15 C -0.752 4.752
16 S 2.589 3.411
17 O -0.965 6.965
18 O -0.970 6.970
19 C -0.725 4.725
20 C 0.070 3.930
21 H 0.113 0.887
22 O -0.358 6.358
23 H 0.077 0.923
24 H 0.053 0.947
25 H 0.060 0.940
26 H 0.129 0.871
27 H 0.036 0.964
28 H 0.011 0.989
29 H 0.044 0.956
30 H 0.072 0.928
31 H 0.153 0.847
32 H 0.169 0.831
33 H 0.192 0.808
34 H 0.189 0.811
35 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges 13.819 -6.998 -10.852 18.913
hybrid contribution -0.308 0.162 1.038 1.095
sum 13.511 -6.835 -9.814 18.044
Atomic orbital electron populations
1.21702 0.96226 0.99669 1.01129 1.22224 0.95438 0.88146 1.00337
1.61778 1.13312 1.18174 1.29330 1.20230 0.96027 0.93790 0.86826
1.21351 0.95632 1.38417 0.97856 0.92959 1.25723 0.96292 0.95510
1.01479 1.70039 1.16681 1.45154 1.27260 0.85949 0.79629 0.79614
0.79163 1.19295 1.21387 1.17606 1.22714 0.90484 0.97008 0.93942
0.87197 1.31355 1.20398 1.09063 1.14424 1.08484 0.77591 0.74025
0.81002 1.93585 1.62367 1.58364 1.82190 1.93557 1.80175 1.36987
1.86232 1.31040 1.09241 1.13579 1.18645 1.21705 0.83423 0.96191
0.91661 0.88739 1.86738 1.46571 1.74427 1.28096 0.92297 0.94720
0.94037 0.87081 0.96370 0.98944 0.95585 0.92833 0.84728 0.83079
0.80839 0.81074 0.75874
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.06 8.57 71.98 0.62 -4.45 16
2 C 0.07 2.24 3.60 86.31 0.31 2.55 16
3 N -0.50 -18.53 4.01 -871.35 -3.49 -22.02 16
4 C 0.16 7.15 3.78 85.56 0.32 7.47 16
5 C -0.49 -27.31 7.56 25.60 0.19 -27.12 16
6 H 0.05 3.22 6.61 -2.91 -0.02 3.20 16
7 C 0.01 0.37 5.47 84.66 0.46 0.83 16
8 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16
9 Si 0.93 43.55 27.58 68.60 1.89 45.44 16
10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16
12 H -0.25 -10.99 6.38 99.48 0.64 -10.35 16
13 C 0.07 1.88 2.53 45.62 0.12 1.99 16
14 H 0.11 2.88 7.47 -2.39 -0.02 2.87 16
15 C -0.62 -14.43 6.24 72.70 0.45 -13.98 16
16 S 2.40 47.86 6.05 -56.49 -0.34 47.51 16
17 O -0.97 -25.90 18.16 -127.52 -2.32 -28.22 16
18 O -0.97 -25.41 18.16 -127.52 -2.32 -27.72 16
19 C -0.59 -6.68 7.05 72.19 0.51 -6.17 16
20 C 0.13 2.39 3.84 30.79 0.12 2.51 16
21 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
22 O -0.55 -10.57 9.59 -148.98 -1.43 -12.00 16
23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
24 H 0.03 1.61 6.45 -2.38 -0.02 1.59 16
25 H 0.04 1.74 7.65 -2.39 -0.02 1.73 16
26 H 0.11 3.12 5.19 -2.39 -0.01 3.11 16
27 H 0.02 0.62 6.75 -2.39 -0.02 0.61 16
28 H -0.01 -0.33 6.36 -2.39 -0.02 -0.34 16
29 H 0.03 1.14 7.17 -2.39 -0.02 1.13 16
30 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16
31 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16
32 H 0.15 3.36 5.67 -2.39 -0.01 3.34 16
33 H 0.17 1.13 7.90 -2.39 -0.02 1.11 16
34 H 0.17 1.01 8.14 -2.39 -0.02 0.99 16
35 H 0.39 3.56 9.02 -74.06 -0.67 2.89 16
Total: -1.00 -78.68 283.86 -4.23 -82.91
By element:
Atomic # 1 Polarization: 8.47 SS G_CDS: 0.37 Total: 8.84 kcal
Atomic # 6 Polarization: -39.46 SS G_CDS: 3.10 Total: -36.35 kcal
Atomic # 7 Polarization: -77.22 SS G_CDS: -3.19 Total: -80.42 kcal
Atomic # 8 Polarization: -61.88 SS G_CDS: -6.06 Total: -67.94 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 1.89 Total: 45.44 kcal
Atomic # 16 Polarization: 47.86 SS G_CDS: -0.34 Total: 47.51 kcal
Total: -78.68 -4.23 -82.91 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252432369.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.759 kcal
(2) G-P(sol) polarization free energy of solvation -78.684 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.444 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.230 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.674 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds