Wall clock time and date at job start Mon Mar 30 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.54001 * 2 1 4 4 O 1.42094 * 110.54459 * 223.24974 * 2 1 3 5 5 N 1.65607 * 104.44904 * 111.62498 * 2 1 3 6 6 C 1.46924 * 120.63051 * 269.72253 * 5 2 1 7 7 C 1.53187 * 108.77642 * 126.66488 * 6 5 2 8 8 C 1.53041 * 109.31211 * 54.63373 * 7 6 5 9 9 O 1.42900 * 109.46193 * 178.61223 * 8 7 6 10 10 C 1.42899 * 114.00200 * 270.06956 * 9 8 7 11 11 C 1.50698 * 109.47220 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99821 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99993 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00153 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00294 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46639 * 90.00094 * 15 13 11 17 17 H 1.48490 * 109.47466 * 210.00311 * 15 13 11 18 18 H 1.48498 * 109.46825 * 330.00691 * 15 13 11 19 19 C 1.53038 * 109.53768 * 298.63806 * 8 7 6 20 20 C 1.46926 * 120.62900 * 90.00281 * 5 2 1 21 21 H 1.08995 * 109.47054 * 308.37337 * 1 2 3 22 22 H 1.09000 * 109.46981 * 68.37802 * 1 2 3 23 23 H 1.09002 * 109.46488 * 188.37370 * 1 2 3 24 24 H 1.09003 * 109.58516 * 246.45688 * 6 5 2 25 25 H 1.09002 * 109.58479 * 6.87847 * 6 5 2 26 26 H 1.08999 * 109.49975 * 294.68379 * 7 6 5 27 27 H 1.08998 * 109.50042 * 174.58459 * 7 6 5 28 28 H 1.09007 * 109.44471 * 58.64946 * 8 7 6 29 29 H 1.08995 * 109.47069 * 300.00393 * 10 9 8 30 30 H 1.09001 * 109.47242 * 59.99904 * 10 9 8 31 31 H 0.96996 * 119.99866 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.49677 * 301.40907 * 19 8 7 33 33 H 1.09001 * 109.52131 * 181.33314 * 19 8 7 34 34 H 1.09002 * 109.58798 * 353.11753 * 20 5 2 35 35 H 1.08996 * 109.58781 * 113.40224 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 2.4200 0.3177 2.6292 7 6 1.5419 -0.1555 3.7919 8 6 1.8548 -1.6219 4.0982 9 8 1.0605 -2.0573 5.2035 10 6 1.6785 -1.8601 6.4767 11 6 0.7575 -2.3514 7.5637 12 1 -0.2038 -2.7718 7.3077 13 6 1.1417 -2.2632 8.8848 14 7 0.3381 -2.6925 9.8334 15 14 2.8041 -1.5354 9.3276 16 1 2.6655 -0.0706 9.5285 17 1 3.3014 -2.1617 10.5788 18 1 3.7671 -1.7952 8.2274 19 6 1.5361 -2.4802 2.8718 20 6 2.4141 -2.0334 1.6987 21 1 -0.3633 0.6379 0.8056 22 1 -0.3633 0.3787 -0.9554 23 1 -0.3632 -1.0168 0.1497 24 1 3.4667 0.3056 2.9332 25 1 2.1323 1.3291 2.3421 26 1 0.4915 -0.0571 3.5180 27 1 1.7470 0.4520 4.6733 28 1 2.9110 -1.7232 4.3478 29 1 2.6157 -2.4152 6.5156 30 1 1.8787 -0.7987 6.6229 31 1 0.6083 -2.6301 10.7629 32 1 0.4857 -2.3600 2.6066 33 1 1.7366 -3.5274 3.0981 34 1 2.1225 -2.5733 0.7978 35 1 3.4607 -2.2375 1.9244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260514284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:21 Heat of formation + Delta-G solvation = -118.512390 kcal Electronic energy + Delta-G solvation = -18565.219490 eV Core-core repulsion = 15497.610541 eV Total energy + Delta-G solvation = -3067.608949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.90545 -37.36418 -36.34980 -36.09913 -32.77612 -31.27491 -31.11677 -29.70011 -27.92251 -23.92220 -23.41390 -21.81331 -20.49288 -18.98921 -17.98126 -16.88534 -16.51305 -16.30975 -15.78076 -14.75274 -14.71182 -14.61280 -14.31824 -13.78419 -13.55297 -13.41939 -13.09078 -12.93514 -12.59213 -12.47227 -12.28812 -12.11729 -11.94240 -11.40072 -11.26132 -11.18294 -11.09141 -10.89951 -10.61523 -10.18437 -9.91350 -9.29062 -9.14405 -8.90637 -8.51262 -6.16904 -4.16483 0.04367 2.39344 3.20374 3.28109 3.28508 3.64992 3.90652 4.30130 4.33953 4.43342 4.60582 4.68745 4.91960 5.10085 5.14714 5.20568 5.32690 5.34768 5.42889 5.60523 5.65794 5.74121 5.81914 5.97102 6.19378 6.22777 6.33938 6.49029 6.58325 6.94135 7.54042 7.96013 8.60117 8.94017 9.42156 10.96096 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.045051 B = 0.004339 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.367116 B = 6451.700267 C = 6596.057050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.612 3.388 3 O -0.958 6.958 4 O -0.958 6.958 5 N -0.999 5.999 6 C 0.125 3.875 7 C -0.159 4.159 8 C 0.087 3.913 9 O -0.374 6.374 10 C 0.170 3.830 11 C -0.521 4.521 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.895 5.895 15 Si 0.876 3.124 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.132 4.132 20 C 0.125 3.875 21 H 0.129 0.871 22 H 0.124 0.876 23 H 0.129 0.871 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.003 0.997 30 H -0.002 1.002 31 H 0.267 0.733 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 5.315 -18.713 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.705 3.295 3 O -0.949 6.949 4 O -0.949 6.949 5 N -0.837 5.837 6 C -0.001 4.001 7 C -0.198 4.198 8 C 0.028 3.972 9 O -0.293 6.293 10 C 0.094 3.906 11 C -0.559 4.559 12 H 0.100 0.900 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.171 4.171 20 C 0.000 4.000 21 H 0.147 0.853 22 H 0.143 0.857 23 H 0.147 0.853 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.389 5.476 -19.202 20.253 hybrid contribution 0.319 0.385 0.881 1.013 sum 3.708 5.861 -18.320 19.589 Atomic orbital electron populations 1.30588 1.28744 1.11826 1.11182 1.04817 0.77697 0.73931 0.73009 1.93600 1.77637 1.37857 1.85760 1.93596 1.77642 1.61691 1.61955 1.57728 1.84149 1.14687 1.27152 1.21446 1.00731 0.92347 0.85527 1.22483 1.00690 0.98364 0.98262 1.21815 0.95165 0.92062 0.88144 1.87954 1.43869 1.83191 1.14278 1.20638 0.94090 0.94575 0.81261 1.20885 1.04688 1.41407 0.88904 0.90008 1.24768 0.97152 0.95040 0.95938 1.69874 1.36518 1.46662 1.00248 0.86858 0.84608 0.79826 0.78496 1.19898 1.20745 1.19101 1.21996 1.00609 1.00573 0.93913 1.21449 1.00780 0.78712 0.99059 0.85257 0.85732 0.85265 0.90808 0.89085 0.90863 0.90239 0.92824 0.97931 0.98396 0.92311 0.90907 0.89901 0.88910 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.41 10.99 101.05 1.11 -3.30 16 2 S 2.61 25.30 6.05 -107.50 -0.65 24.65 16 3 O -0.96 -12.14 16.72 -57.54 -0.96 -13.10 16 4 O -0.96 -11.93 16.73 -57.54 -0.96 -12.89 16 5 N -1.00 -10.24 3.22 -113.53 -0.37 -10.61 16 6 C 0.12 1.34 6.31 -3.71 -0.02 1.32 16 7 C -0.16 -2.10 5.69 -26.61 -0.15 -2.25 16 8 C 0.09 1.37 2.57 -26.69 -0.07 1.30 16 9 O -0.37 -8.10 9.97 -35.23 -0.35 -8.46 16 10 C 0.17 4.11 4.57 36.00 0.16 4.28 16 11 C -0.52 -15.07 9.99 -34.44 -0.34 -15.42 16 12 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 15 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 19 C -0.13 -1.63 5.73 -26.62 -0.15 -1.79 16 20 C 0.13 1.27 6.31 -3.71 -0.02 1.25 16 21 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.12 0.63 8.14 -51.92 -0.42 0.20 16 23 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 0.87 7.10 -51.93 -0.37 0.50 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 28 H 0.05 0.83 7.79 -51.92 -0.40 0.43 16 29 H 0.00 0.07 7.14 -51.93 -0.37 -0.30 16 30 H 0.00 -0.04 7.27 -51.93 -0.38 -0.42 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.81 7.11 -51.93 -0.37 0.44 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -35.25 298.25 -7.55 -42.80 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -5.27 Total: -4.13 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 0.41 Total: -12.61 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.41 Total: -36.98 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -2.28 Total: -34.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 25.30 SS G_CDS: -0.65 Total: 24.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.25 -7.55 -42.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.713 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds