Wall clock time and date at job start Mon Mar 30 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.54001 * 2 1 4 4 O 1.42094 * 110.54459 * 223.24974 * 2 1 3 5 5 N 1.65607 * 104.44904 * 111.62498 * 2 1 3 6 6 C 1.46924 * 120.63051 * 269.72253 * 5 2 1 7 7 C 1.53187 * 108.77642 * 126.66488 * 6 5 2 8 8 C 1.53041 * 109.31211 * 54.63373 * 7 6 5 9 9 O 1.42900 * 109.46193 * 178.61223 * 8 7 6 10 10 C 1.42899 * 114.00200 * 270.06956 * 9 8 7 11 11 C 1.50698 * 109.47220 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99821 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99993 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00153 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00294 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46639 * 90.00094 * 15 13 11 17 17 H 1.48490 * 109.47466 * 210.00311 * 15 13 11 18 18 H 1.48498 * 109.46825 * 330.00691 * 15 13 11 19 19 C 1.53038 * 109.53768 * 298.63806 * 8 7 6 20 20 C 1.46926 * 120.62900 * 90.00281 * 5 2 1 21 21 H 1.08995 * 109.47054 * 308.37337 * 1 2 3 22 22 H 1.09000 * 109.46981 * 68.37802 * 1 2 3 23 23 H 1.09002 * 109.46488 * 188.37370 * 1 2 3 24 24 H 1.09003 * 109.58516 * 246.45688 * 6 5 2 25 25 H 1.09002 * 109.58479 * 6.87847 * 6 5 2 26 26 H 1.08999 * 109.49975 * 294.68379 * 7 6 5 27 27 H 1.08998 * 109.50042 * 174.58459 * 7 6 5 28 28 H 1.09007 * 109.44471 * 58.64946 * 8 7 6 29 29 H 1.08995 * 109.47069 * 300.00393 * 10 9 8 30 30 H 1.09001 * 109.47242 * 59.99904 * 10 9 8 31 31 H 0.96996 * 119.99866 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.49677 * 301.40907 * 19 8 7 33 33 H 1.09001 * 109.52131 * 181.33314 * 19 8 7 34 34 H 1.09002 * 109.58798 * 353.11753 * 20 5 2 35 35 H 1.08996 * 109.58781 * 113.40224 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 2.4200 0.3177 2.6292 7 6 1.5419 -0.1555 3.7919 8 6 1.8548 -1.6219 4.0982 9 8 1.0605 -2.0573 5.2035 10 6 1.6785 -1.8601 6.4767 11 6 0.7575 -2.3514 7.5637 12 1 -0.2038 -2.7718 7.3077 13 6 1.1417 -2.2632 8.8848 14 7 0.3381 -2.6925 9.8334 15 14 2.8041 -1.5354 9.3276 16 1 2.6655 -0.0706 9.5285 17 1 3.3014 -2.1617 10.5788 18 1 3.7671 -1.7952 8.2274 19 6 1.5361 -2.4802 2.8718 20 6 2.4141 -2.0334 1.6987 21 1 -0.3633 0.6379 0.8056 22 1 -0.3633 0.3787 -0.9554 23 1 -0.3632 -1.0168 0.1497 24 1 3.4667 0.3056 2.9332 25 1 2.1323 1.3291 2.3421 26 1 0.4915 -0.0571 3.5180 27 1 1.7470 0.4520 4.6733 28 1 2.9110 -1.7232 4.3478 29 1 2.6157 -2.4152 6.5156 30 1 1.8787 -0.7987 6.6229 31 1 0.6083 -2.6301 10.7629 32 1 0.4857 -2.3600 2.6066 33 1 1.7366 -3.5274 3.0981 34 1 2.1225 -2.5733 0.7978 35 1 3.4607 -2.2375 1.9244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260514284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:21 Heat of formation + Delta-G solvation = -146.250046 kcal Electronic energy + Delta-G solvation = -18566.422285 eV Core-core repulsion = 15497.610541 eV Total energy + Delta-G solvation = -3068.811744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04580 -38.21959 -37.69363 -36.99148 -34.87591 -32.46438 -32.07907 -30.25593 -29.88081 -25.07268 -24.40245 -23.68849 -21.52099 -19.85621 -19.13182 -18.63744 -17.42962 -17.28153 -17.12252 -16.45024 -16.03871 -15.58916 -15.39230 -15.03101 -14.65778 -14.34764 -14.13592 -13.94854 -13.83002 -13.57810 -13.40312 -13.16650 -12.92196 -12.88041 -12.80729 -12.34076 -12.16853 -11.99940 -11.93376 -11.76699 -11.38915 -11.27809 -10.90774 -10.22362 -10.01456 -8.37247 -6.44993 -0.68293 1.33789 1.36329 1.46986 1.63280 2.29172 2.92512 2.95828 3.04026 3.16829 3.60700 3.92063 4.03872 4.10334 4.18588 4.24619 4.29475 4.42309 4.50823 4.62619 4.77751 4.79657 4.83903 4.96135 4.97425 5.05413 5.25655 5.26185 5.31729 5.47202 5.61243 5.97111 6.59692 6.78834 7.20029 8.79857 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.045051 B = 0.004339 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.367116 B = 6451.700267 C = 6596.057050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.623 3.377 3 O -0.991 6.991 4 O -0.989 6.989 5 N -1.002 6.002 6 C 0.130 3.870 7 C -0.154 4.154 8 C 0.072 3.928 9 O -0.400 6.400 10 C 0.182 3.818 11 C -0.545 4.545 12 H 0.030 0.970 13 C 0.014 3.986 14 N -0.943 5.943 15 Si 0.953 3.047 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.245 1.245 19 C -0.127 4.127 20 C 0.129 3.871 21 H 0.141 0.859 22 H 0.145 0.855 23 H 0.143 0.857 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.009 0.991 30 H 0.011 0.989 31 H 0.273 0.727 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 6.411 -19.964 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.720 3.280 3 O -0.982 6.982 4 O -0.980 6.980 5 N -0.840 5.840 6 C 0.004 3.996 7 C -0.194 4.194 8 C 0.014 3.986 9 O -0.320 6.320 10 C 0.106 3.894 11 C -0.583 4.583 12 H 0.049 0.951 13 C -0.184 4.184 14 N -0.582 5.582 15 Si 0.774 3.226 16 H -0.183 1.183 17 H -0.200 1.200 18 H -0.169 1.169 19 C -0.166 4.166 20 C 0.004 3.996 21 H 0.159 0.841 22 H 0.163 0.837 23 H 0.162 0.838 24 H 0.096 0.904 25 H 0.124 0.876 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.617 6.570 -20.485 22.002 hybrid contribution -0.212 -0.007 1.209 1.228 sum 4.404 6.564 -19.276 20.833 Atomic orbital electron populations 1.30423 1.24318 1.13330 1.12984 1.04373 0.78972 0.72573 0.72117 1.93556 1.79402 1.39205 1.86012 1.93555 1.79361 1.62273 1.62774 1.57681 1.84764 1.14559 1.26951 1.21404 1.00432 0.93005 0.84730 1.22423 1.01549 0.96384 0.99012 1.22253 0.94693 0.94321 0.87283 1.87899 1.45399 1.84020 1.14654 1.20303 0.92841 0.94823 0.81411 1.21188 1.03860 1.41984 0.91245 0.95129 1.25817 1.02016 0.95110 0.95442 1.70033 1.39204 1.48022 1.00975 0.85644 0.78728 0.79398 0.78809 1.18317 1.20037 1.16888 1.21981 1.01514 0.99874 0.93210 1.21456 1.00596 0.78855 0.98682 0.84058 0.83655 0.83824 0.90373 0.87620 0.90484 0.91149 0.92600 0.97334 0.97095 0.91837 0.90394 0.90190 0.87126 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.31 10.99 113.37 1.25 -5.07 16 2 S 2.62 45.12 6.05 -56.49 -0.34 44.78 16 3 O -0.99 -23.46 16.72 -127.65 -2.13 -25.59 16 4 O -0.99 -22.88 16.73 -127.65 -2.14 -25.01 16 5 N -1.00 -18.27 3.22 -513.09 -1.65 -19.93 16 6 C 0.13 2.50 6.31 86.36 0.55 3.05 16 7 C -0.15 -3.84 5.69 30.67 0.17 -3.66 16 8 C 0.07 2.19 2.57 30.62 0.08 2.27 16 9 O -0.40 -17.38 9.97 -148.98 -1.49 -18.86 16 10 C 0.18 8.77 4.57 71.24 0.33 9.09 16 11 C -0.55 -32.46 9.99 25.60 0.26 -32.20 16 12 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 13 C 0.01 0.82 5.47 84.65 0.46 1.29 16 14 N -0.94 -58.61 13.96 21.45 0.30 -58.31 16 15 Si 0.95 42.45 27.47 68.60 1.88 44.33 16 16 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.25 -10.04 6.54 99.48 0.65 -9.39 16 19 C -0.13 -2.95 5.73 30.67 0.18 -2.77 16 20 C 0.13 2.34 6.31 86.36 0.55 2.89 16 21 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.11 1.76 7.10 -2.39 -0.02 1.74 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.87 7.84 -2.39 -0.02 1.85 16 28 H 0.06 1.65 7.79 -2.38 -0.02 1.64 16 29 H 0.01 0.42 7.14 -2.39 -0.02 0.40 16 30 H 0.01 0.51 7.27 -2.39 -0.02 0.50 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 1.65 7.11 -2.39 -0.02 1.63 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -77.90 298.25 -0.75 -78.65 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.01 Total: 5.06 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.81 Total: -25.12 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.35 Total: -78.24 kcal Atomic # 8 Polarization: -63.72 SS G_CDS: -5.76 Total: -69.47 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.33 kcal Atomic # 16 Polarization: 45.12 SS G_CDS: -0.34 Total: 44.78 kcal Total: -77.90 -0.75 -78.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.604 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds