Wall clock time and date at job start Mon Mar 30 2020 04:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47199 * 2 1 4 4 H 1.08993 * 109.46759 * 304.99850 * 3 2 1 5 5 C 1.54800 * 109.47074 * 185.00225 * 3 2 1 6 6 N 1.45121 * 109.53276 * 172.10765 * 5 3 2 7 7 S 1.65601 * 118.75637 * 269.29572 * 6 5 3 8 8 O 1.42102 * 106.40098 * 336.45754 * 7 6 5 9 9 O 1.42098 * 106.40172 * 203.53843 * 7 6 5 10 10 C 1.76193 * 107.21727 * 89.99579 * 7 6 5 11 11 H 1.07999 * 120.00769 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99923 * 179.97438 * 10 7 6 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.47509 * 122.48476 * 89.56831 * 6 5 3 19 19 C 1.53939 * 110.82045 * 317.97914 * 18 6 5 20 20 C 1.51539 * 109.72930 * 320.30639 * 19 18 6 21 21 O 1.38019 * 109.46523 * 64.99217 * 3 2 1 22 22 H 1.09005 * 109.46707 * 299.99765 * 1 2 3 23 23 H 1.08998 * 109.47520 * 59.99599 * 1 2 3 24 24 H 1.09005 * 109.46797 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46848 * 240.00681 * 2 1 3 26 26 H 1.08998 * 109.47520 * 120.00401 * 2 1 3 27 27 H 1.09001 * 109.46315 * 52.08788 * 5 3 2 28 28 H 1.09001 * 109.46606 * 292.13005 * 5 3 2 29 29 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.16454 * 78.49947 * 18 6 5 31 31 H 1.09003 * 109.16092 * 197.69603 * 18 6 5 32 32 H 1.09005 * 109.46410 * 200.17829 * 19 18 6 33 33 H 1.09002 * 109.29774 * 80.33173 * 19 18 6 34 34 H 1.09000 * 109.58886 * 331.50983 * 20 19 18 35 35 H 1.09000 * 109.58618 * 211.08019 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5828 1.4444 -0.1273 6 7 4.0526 2.8046 -0.3149 7 16 4.2088 3.3879 -1.8568 8 8 4.3637 2.2551 -2.7006 9 8 5.1571 4.4442 -1.7920 10 6 2.6700 4.1267 -2.2934 11 1 1.8529 4.1302 -1.5872 12 6 2.5092 4.7015 -3.5363 13 7 1.3608 5.2535 -3.8620 14 14 3.9226 4.6962 -4.7577 15 1 3.8524 3.4688 -5.5907 16 1 5.2125 4.7222 -4.0222 17 1 3.8266 5.8934 -5.6311 18 6 4.4017 3.6852 0.8159 19 6 3.3736 3.5487 1.9534 20 6 1.9790 3.4347 1.3716 21 8 1.6747 2.0595 1.1793 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8773 0.8371 -0.9832 28 1 4.0226 1.0301 0.7800 29 1 1.2475 5.6575 -4.7366 30 1 5.3902 3.4153 1.1876 31 1 4.4198 4.7193 0.4716 32 1 3.4272 4.4256 2.5986 33 1 3.5978 2.6553 2.5363 34 1 1.9385 3.9553 0.4148 35 1 1.2585 3.8755 2.0606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308758976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:46 Heat of formation + Delta-G solvation = -151.993940 kcal Electronic energy + Delta-G solvation = -19839.493032 eV Core-core repulsion = 16770.432214 eV Total energy + Delta-G solvation = -3069.060818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64770 -37.84273 -36.66766 -36.50856 -35.24495 -35.14915 -32.35044 -28.86147 -28.55128 -27.21760 -24.07469 -22.25689 -21.93293 -20.54405 -19.38725 -18.79468 -17.78966 -17.32626 -17.26092 -16.75245 -15.91042 -15.66054 -15.17506 -15.03391 -14.87036 -14.51884 -14.22537 -13.89688 -13.64985 -13.37142 -13.34638 -13.06526 -12.74665 -12.63470 -12.56898 -12.24880 -12.15752 -11.94697 -11.77180 -11.63500 -11.38474 -11.25234 -11.17856 -10.47546 -9.70331 -8.98466 -7.53951 0.05963 1.01016 1.10005 1.17230 1.85418 2.34285 2.39811 2.79919 3.30568 3.74259 3.83784 3.92910 4.03190 4.19560 4.23581 4.36384 4.36909 4.52376 4.61805 4.71395 4.77142 4.79499 4.95787 4.99067 5.13354 5.14751 5.17521 5.23808 5.33715 5.39210 5.49431 5.87236 6.00798 6.51794 6.72238 8.18559 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.009506 C = 0.008401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.874306 B = 2944.917244 C = 3332.219179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.077 3.923 4 H 0.025 0.975 5 C 0.081 3.919 6 N -0.995 5.995 7 S 2.683 3.317 8 O -1.027 7.027 9 O -1.027 7.027 10 C -1.031 5.031 11 H 0.106 0.894 12 C 0.112 3.888 13 N -0.850 5.850 14 Si 0.820 3.180 15 H -0.240 1.240 16 H -0.232 1.232 17 H -0.219 1.219 18 C 0.110 3.890 19 C -0.147 4.147 20 C 0.060 3.940 21 O -0.384 6.384 22 H 0.056 0.944 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.291 0.709 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -6.794 10.984 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.016 3.984 4 H 0.043 0.957 5 C -0.045 4.045 6 N -0.833 5.833 7 S 2.784 3.216 8 O -1.017 7.017 9 O -1.017 7.017 10 C -1.163 5.163 11 H 0.124 0.876 12 C -0.105 4.105 13 N -0.481 5.481 14 Si 0.638 3.362 15 H -0.163 1.163 16 H -0.154 1.154 17 H -0.141 1.141 18 C -0.014 4.014 19 C -0.186 4.186 20 C -0.016 4.016 21 O -0.303 6.303 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.131 0.869 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.050 0.950 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.978 -6.851 10.502 12.694 hybrid contribution -0.315 0.839 -1.106 1.423 sum 1.662 -6.013 9.396 11.278 Atomic orbital electron populations 1.21686 0.95043 1.02274 1.01362 1.21537 0.96999 0.92276 1.03922 1.22224 0.93693 0.95383 0.87082 0.95721 1.22385 0.95223 0.82011 1.04843 1.56986 1.82119 1.21625 1.22607 1.01007 0.75502 0.72876 0.72203 1.93351 1.88593 1.53568 1.66193 1.93419 1.64150 1.57637 1.86474 1.30999 1.21919 1.53486 1.09925 0.87573 1.25107 0.97341 0.90042 0.98010 1.70010 1.24475 1.30690 1.22889 0.87562 0.81977 0.82834 0.83867 1.16309 1.15427 1.14092 1.21952 0.99501 0.93185 0.86790 1.22454 0.93678 1.05207 0.97275 1.22399 0.97196 0.81801 1.00193 1.86138 1.81113 1.24874 1.38149 0.92469 0.94572 0.90609 0.89832 0.88968 0.89393 0.86886 0.89875 0.89627 0.90956 0.87115 0.88919 0.95031 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.80 71.98 0.71 -3.01 16 2 C -0.11 -2.87 5.64 30.60 0.17 -2.70 16 3 C 0.08 2.58 2.64 31.21 0.08 2.67 16 4 H 0.02 1.04 7.39 -2.39 -0.02 1.03 16 5 C 0.08 2.70 5.09 87.25 0.44 3.15 16 6 N -1.00 -38.49 2.48 -511.53 -1.27 -39.75 16 7 S 2.68 135.32 4.09 -56.49 -0.23 135.09 16 8 O -1.03 -54.74 15.28 -128.00 -1.96 -56.70 16 9 O -1.03 -55.06 14.73 -128.00 -1.89 -56.94 16 10 C -1.03 -58.05 9.91 67.74 0.67 -57.37 16 11 H 0.11 6.14 6.24 -2.91 -0.02 6.12 16 12 C 0.11 6.45 5.47 84.65 0.46 6.92 16 13 N -0.85 -49.24 13.96 21.45 0.30 -48.94 16 14 Si 0.82 41.40 26.54 68.60 1.82 43.22 16 15 H -0.24 -11.75 7.11 99.48 0.71 -11.05 16 16 H -0.23 -12.08 5.61 99.48 0.56 -11.52 16 17 H -0.22 -9.72 7.11 99.48 0.71 -9.01 16 18 C 0.11 3.46 6.07 86.50 0.52 3.98 16 19 C -0.15 -3.61 5.79 30.43 0.18 -3.43 16 20 C 0.06 1.82 6.37 71.50 0.46 2.27 16 21 O -0.38 -12.15 8.99 -117.91 -1.06 -13.21 16 22 H 0.06 1.47 7.82 -2.38 -0.02 1.45 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 3.06 6.84 -2.39 -0.02 3.05 16 28 H 0.11 2.95 8.11 -2.39 -0.02 2.93 16 29 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 2.50 7.25 -2.39 -0.02 2.49 16 32 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16 34 H 0.03 1.19 5.93 -2.39 -0.01 1.18 16 35 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -68.56 285.58 0.34 -68.22 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.92 Total: 16.55 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 3.70 Total: -47.54 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -0.97 Total: -88.69 kcal Atomic # 8 Polarization: -121.95 SS G_CDS: -4.90 Total: -126.85 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.82 Total: 43.22 kcal Atomic # 16 Polarization: 135.32 SS G_CDS: -0.23 Total: 135.09 kcal Total: -68.56 0.34 -68.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308758976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.777 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds