Wall clock time and date at job start Mon Mar 30 2020 04:29:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53005 * 109.47199 * 2 1
4 4 H 1.08993 * 109.46759 * 304.99850 * 3 2 1
5 5 C 1.54800 * 109.47074 * 185.00225 * 3 2 1
6 6 N 1.45121 * 109.53276 * 172.10765 * 5 3 2
7 7 S 1.65601 * 118.75637 * 269.29572 * 6 5 3
8 8 O 1.42102 * 106.40098 * 336.45754 * 7 6 5
9 9 O 1.42098 * 106.40172 * 203.53843 * 7 6 5
10 10 C 1.76193 * 107.21727 * 89.99579 * 7 6 5
11 11 H 1.07999 * 120.00769 * 0.02562 * 10 7 6
12 12 C 1.37881 * 119.99923 * 179.97438 * 10 7 6
13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 7
14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 7
15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10
16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10
17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10
18 18 C 1.47509 * 122.48476 * 89.56831 * 6 5 3
19 19 C 1.53939 * 110.82045 * 317.97914 * 18 6 5
20 20 C 1.51539 * 109.72930 * 320.30639 * 19 18 6
21 21 O 1.38019 * 109.46523 * 64.99217 * 3 2 1
22 22 H 1.09005 * 109.46707 * 299.99765 * 1 2 3
23 23 H 1.08998 * 109.47520 * 59.99599 * 1 2 3
24 24 H 1.09005 * 109.46797 * 180.02562 * 1 2 3
25 25 H 1.09010 * 109.46848 * 240.00681 * 2 1 3
26 26 H 1.08998 * 109.47520 * 120.00401 * 2 1 3
27 27 H 1.09001 * 109.46315 * 52.08788 * 5 3 2
28 28 H 1.09001 * 109.46606 * 292.13005 * 5 3 2
29 29 H 0.96998 * 120.00124 * 180.02562 * 13 12 10
30 30 H 1.08998 * 109.16454 * 78.49947 * 18 6 5
31 31 H 1.09003 * 109.16092 * 197.69603 * 18 6 5
32 32 H 1.09005 * 109.46410 * 200.17829 * 19 18 6
33 33 H 1.09002 * 109.29774 * 80.33173 * 19 18 6
34 34 H 1.09000 * 109.58886 * 331.50983 * 20 19 18
35 35 H 1.09000 * 109.58618 * 211.08019 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5828 1.4444 -0.1273
6 7 4.0526 2.8046 -0.3149
7 16 4.2088 3.3879 -1.8568
8 8 4.3637 2.2551 -2.7006
9 8 5.1571 4.4442 -1.7920
10 6 2.6700 4.1267 -2.2934
11 1 1.8529 4.1302 -1.5872
12 6 2.5092 4.7015 -3.5363
13 7 1.3608 5.2535 -3.8620
14 14 3.9226 4.6962 -4.7577
15 1 3.8524 3.4688 -5.5907
16 1 5.2125 4.7222 -4.0222
17 1 3.8266 5.8934 -5.6311
18 6 4.4017 3.6852 0.8159
19 6 3.3736 3.5487 1.9534
20 6 1.9790 3.4347 1.3716
21 8 1.6747 2.0595 1.1793
22 1 -0.3633 0.5138 0.8901
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3633 -1.0277 0.0005
25 1 1.8933 -0.5138 -0.8901
26 1 1.8934 -0.5139 0.8899
27 1 3.8773 0.8371 -0.9832
28 1 4.0226 1.0301 0.7800
29 1 1.2475 5.6575 -4.7366
30 1 5.3902 3.4153 1.1876
31 1 4.4198 4.7193 0.4716
32 1 3.4272 4.4256 2.5986
33 1 3.5978 2.6553 2.5363
34 1 1.9385 3.9553 0.4148
35 1 1.2585 3.8755 2.0606
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308758976.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:29:46
Heat of formation + Delta-G solvation = -151.993940 kcal
Electronic energy + Delta-G solvation = -19839.493032 eV
Core-core repulsion = 16770.432214 eV
Total energy + Delta-G solvation = -3069.060818 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.64770 -37.84273 -36.66766 -36.50856 -35.24495 -35.14915 -32.35044 -28.86147
-28.55128 -27.21760 -24.07469 -22.25689 -21.93293 -20.54405 -19.38725 -18.79468
-17.78966 -17.32626 -17.26092 -16.75245 -15.91042 -15.66054 -15.17506 -15.03391
-14.87036 -14.51884 -14.22537 -13.89688 -13.64985 -13.37142 -13.34638 -13.06526
-12.74665 -12.63470 -12.56898 -12.24880 -12.15752 -11.94697 -11.77180 -11.63500
-11.38474 -11.25234 -11.17856 -10.47546 -9.70331 -8.98466 -7.53951 0.05963
1.01016 1.10005 1.17230 1.85418 2.34285 2.39811 2.79919 3.30568
3.74259 3.83784 3.92910 4.03190 4.19560 4.23581 4.36384 4.36909
4.52376 4.61805 4.71395 4.77142 4.79499 4.95787 4.99067 5.13354
5.14751 5.17521 5.23808 5.33715 5.39210 5.49431 5.87236 6.00798
6.51794 6.72238 8.18559
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.022044 B = 0.009506 C = 0.008401
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1269.874306 B = 2944.917244 C = 3332.219179
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.110 4.110
3 C 0.077 3.923
4 H 0.025 0.975
5 C 0.081 3.919
6 N -0.995 5.995
7 S 2.683 3.317
8 O -1.027 7.027
9 O -1.027 7.027
10 C -1.031 5.031
11 H 0.106 0.894
12 C 0.112 3.888
13 N -0.850 5.850
14 Si 0.820 3.180
15 H -0.240 1.240
16 H -0.232 1.232
17 H -0.219 1.219
18 C 0.110 3.890
19 C -0.147 4.147
20 C 0.060 3.940
21 O -0.384 6.384
22 H 0.056 0.944
23 H 0.035 0.965
24 H 0.075 0.925
25 H 0.083 0.917
26 H 0.092 0.908
27 H 0.088 0.912
28 H 0.113 0.887
29 H 0.291 0.709
30 H 0.086 0.914
31 H 0.072 0.928
32 H 0.111 0.889
33 H 0.092 0.908
34 H 0.031 0.969
35 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.385 -6.794 10.984 12.989
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.147 4.147
3 C 0.016 3.984
4 H 0.043 0.957
5 C -0.045 4.045
6 N -0.833 5.833
7 S 2.784 3.216
8 O -1.017 7.017
9 O -1.017 7.017
10 C -1.163 5.163
11 H 0.124 0.876
12 C -0.105 4.105
13 N -0.481 5.481
14 Si 0.638 3.362
15 H -0.163 1.163
16 H -0.154 1.154
17 H -0.141 1.141
18 C -0.014 4.014
19 C -0.186 4.186
20 C -0.016 4.016
21 O -0.303 6.303
22 H 0.075 0.925
23 H 0.054 0.946
24 H 0.094 0.906
25 H 0.102 0.898
26 H 0.110 0.890
27 H 0.106 0.894
28 H 0.131 0.869
29 H 0.101 0.899
30 H 0.104 0.896
31 H 0.090 0.910
32 H 0.129 0.871
33 H 0.111 0.889
34 H 0.050 0.950
35 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 1.978 -6.851 10.502 12.694
hybrid contribution -0.315 0.839 -1.106 1.423
sum 1.662 -6.013 9.396 11.278
Atomic orbital electron populations
1.21686 0.95043 1.02274 1.01362 1.21537 0.96999 0.92276 1.03922
1.22224 0.93693 0.95383 0.87082 0.95721 1.22385 0.95223 0.82011
1.04843 1.56986 1.82119 1.21625 1.22607 1.01007 0.75502 0.72876
0.72203 1.93351 1.88593 1.53568 1.66193 1.93419 1.64150 1.57637
1.86474 1.30999 1.21919 1.53486 1.09925 0.87573 1.25107 0.97341
0.90042 0.98010 1.70010 1.24475 1.30690 1.22889 0.87562 0.81977
0.82834 0.83867 1.16309 1.15427 1.14092 1.21952 0.99501 0.93185
0.86790 1.22454 0.93678 1.05207 0.97275 1.22399 0.97196 0.81801
1.00193 1.86138 1.81113 1.24874 1.38149 0.92469 0.94572 0.90609
0.89832 0.88968 0.89393 0.86886 0.89875 0.89627 0.90956 0.87115
0.88919 0.95031 0.87335
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.72 9.80 71.98 0.71 -3.01 16
2 C -0.11 -2.87 5.64 30.60 0.17 -2.70 16
3 C 0.08 2.58 2.64 31.21 0.08 2.67 16
4 H 0.02 1.04 7.39 -2.39 -0.02 1.03 16
5 C 0.08 2.70 5.09 87.25 0.44 3.15 16
6 N -1.00 -38.49 2.48 -511.53 -1.27 -39.75 16
7 S 2.68 135.32 4.09 -56.49 -0.23 135.09 16
8 O -1.03 -54.74 15.28 -128.00 -1.96 -56.70 16
9 O -1.03 -55.06 14.73 -128.00 -1.89 -56.94 16
10 C -1.03 -58.05 9.91 67.74 0.67 -57.37 16
11 H 0.11 6.14 6.24 -2.91 -0.02 6.12 16
12 C 0.11 6.45 5.47 84.65 0.46 6.92 16
13 N -0.85 -49.24 13.96 21.45 0.30 -48.94 16
14 Si 0.82 41.40 26.54 68.60 1.82 43.22 16
15 H -0.24 -11.75 7.11 99.48 0.71 -11.05 16
16 H -0.23 -12.08 5.61 99.48 0.56 -11.52 16
17 H -0.22 -9.72 7.11 99.48 0.71 -9.01 16
18 C 0.11 3.46 6.07 86.50 0.52 3.98 16
19 C -0.15 -3.61 5.79 30.43 0.18 -3.43 16
20 C 0.06 1.82 6.37 71.50 0.46 2.27 16
21 O -0.38 -12.15 8.99 -117.91 -1.06 -13.21 16
22 H 0.06 1.47 7.82 -2.38 -0.02 1.45 16
23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
24 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16
25 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16
26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
27 H 0.09 3.06 6.84 -2.39 -0.02 3.05 16
28 H 0.11 2.95 8.11 -2.39 -0.02 2.93 16
29 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16
30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16
31 H 0.07 2.50 7.25 -2.39 -0.02 2.49 16
32 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16
33 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16
34 H 0.03 1.19 5.93 -2.39 -0.01 1.18 16
35 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16
Total: -1.00 -68.56 285.58 0.34 -68.22
By element:
Atomic # 1 Polarization: 15.63 SS G_CDS: 0.92 Total: 16.55 kcal
Atomic # 6 Polarization: -51.23 SS G_CDS: 3.70 Total: -47.54 kcal
Atomic # 7 Polarization: -87.72 SS G_CDS: -0.97 Total: -88.69 kcal
Atomic # 8 Polarization: -121.95 SS G_CDS: -4.90 Total: -126.85 kcal
Atomic # 14 Polarization: 41.40 SS G_CDS: 1.82 Total: 43.22 kcal
Atomic # 16 Polarization: 135.32 SS G_CDS: -0.23 Total: 135.09 kcal
Total: -68.56 0.34 -68.22 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308758976.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.777 kcal
(2) G-P(sol) polarization free energy of solvation -68.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.333 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal
(6) G-S(sol) free energy of system = (1) + (5) -151.994 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds