Wall clock time and date at job start Mon Mar 30 2020 04:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00313 * 2 1 4 4 C 1.52994 * 109.47463 * 185.30578 * 3 2 1 5 5 C 1.53004 * 109.46704 * 65.30623 * 3 2 1 6 6 N 1.46494 * 109.47105 * 65.00073 * 5 3 2 7 7 S 1.65605 * 119.99907 * 164.99763 * 6 5 3 8 8 O 1.42102 * 106.40133 * 178.53621 * 7 6 5 9 9 O 1.42094 * 106.40201 * 311.46325 * 7 6 5 10 10 C 1.76209 * 107.21718 * 65.00085 * 7 6 5 11 11 H 1.07998 * 119.99366 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99989 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00084 * 359.97438 * 12 10 7 14 14 Si 1.86796 * 119.99996 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47341 * 89.99685 * 14 12 10 16 16 H 1.48502 * 109.47283 * 209.99743 * 14 12 10 17 17 H 1.48499 * 109.47138 * 330.00035 * 14 12 10 18 18 C 1.53001 * 109.47436 * 305.31048 * 3 2 1 19 19 C 1.52998 * 117.51824 * 226.36494 * 18 3 2 20 20 C 1.52999 * 60.00320 * 107.47466 * 19 18 3 21 21 H 1.08993 * 109.47144 * 184.79111 * 1 2 3 22 22 H 1.09007 * 109.46633 * 304.78700 * 1 2 3 23 23 H 1.09002 * 109.47464 * 64.78352 * 1 2 3 24 24 H 1.09004 * 109.47414 * 180.02562 * 4 3 2 25 25 H 1.09000 * 109.46921 * 300.00238 * 4 3 2 26 26 H 1.08998 * 109.47287 * 60.00276 * 4 3 2 27 27 H 1.09005 * 109.46822 * 185.00611 * 5 3 2 28 28 H 1.09001 * 109.46873 * 304.99622 * 5 3 2 29 29 H 0.96992 * 120.00224 * 344.99927 * 6 5 3 30 30 H 0.96996 * 120.00403 * 180.02562 * 13 12 10 31 31 H 1.08997 * 115.55064 * 80.65352 * 18 3 2 32 32 H 1.09005 * 117.49863 * 214.96971 * 19 18 3 33 33 H 1.09004 * 117.49764 * 359.97438 * 19 18 3 34 34 H 1.08999 * 117.49881 * 252.50738 * 20 19 18 35 35 H 1.08999 * 117.49520 * 107.49466 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5298 1.1871 -0.1334 5 6 1.6672 2.0164 1.3107 6 7 2.2985 1.3110 2.4286 7 16 2.4168 2.0436 3.9091 8 8 3.0365 1.1021 4.7744 9 8 2.9395 3.3436 3.6728 10 6 0.7765 2.2690 4.5121 11 1 -0.0658 1.9422 3.9205 12 6 0.5685 2.8633 5.7386 13 7 1.5944 3.2616 6.4587 14 14 -1.1703 3.1016 6.3782 15 1 -1.5760 1.9094 7.1652 16 1 -1.2183 4.3066 7.2447 17 1 -2.0991 3.2780 5.2330 18 6 1.4561 2.1105 -1.1771 19 6 2.4561 2.8896 -2.0339 20 6 1.7965 1.6250 -2.5876 21 1 -0.3633 -1.0240 0.0858 22 1 -0.3633 0.5864 0.8441 23 1 -0.3634 0.4378 -0.9297 24 1 3.9733 2.1829 -0.1329 25 1 3.9246 0.6136 0.7053 26 1 3.7743 0.6806 -1.0671 27 1 2.0341 3.0422 1.2744 28 1 0.5859 2.0221 1.4486 29 1 2.6472 0.4148 2.3018 30 1 1.4481 3.6794 7.3218 31 1 0.4732 2.5550 -1.0214 32 1 2.1310 3.8467 -2.4417 33 1 3.5091 2.8289 -1.7587 34 1 2.4155 0.7323 -2.6769 35 1 1.0375 1.7502 -3.3598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308860076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:39 Heat of formation + Delta-G solvation = -113.359126 kcal Electronic energy + Delta-G solvation = -19038.911980 eV Core-core repulsion = 15971.526493 eV Total energy + Delta-G solvation = -3067.385486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71242 -36.12318 -35.17702 -34.20456 -33.89852 -33.04281 -30.24441 -26.78774 -26.10400 -25.91566 -22.90071 -22.31209 -19.33403 -18.83507 -17.46770 -16.56244 -16.44240 -15.81834 -15.45167 -14.93286 -14.65663 -14.31687 -13.98450 -13.65145 -13.18249 -12.87087 -12.43320 -12.29469 -11.95678 -11.63622 -11.51081 -11.23969 -11.21528 -11.18993 -10.67358 -10.59898 -10.48284 -10.36734 -10.24649 -10.15187 -10.13544 -9.33734 -9.23181 -8.96071 -8.40831 -6.68080 -5.29606 2.39207 3.07137 3.13893 3.19715 3.57593 4.06249 4.11168 4.49051 4.66530 4.76369 4.89279 4.91390 5.05637 5.20772 5.37882 5.54318 5.55914 5.58847 5.75131 5.79655 5.80805 5.89540 5.93068 6.04394 6.08037 6.09744 6.20664 6.40533 6.53763 6.88840 7.33590 7.36689 7.95746 8.03424 8.90927 10.26084 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.006350 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.332603 B = 4408.383767 C = 4749.500650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.372 6.372 3 C 0.139 3.861 4 C -0.142 4.142 5 C 0.109 3.891 6 N -1.130 6.130 7 S 2.717 3.283 8 O -1.007 7.007 9 O -1.008 7.008 10 C -1.020 5.020 11 H 0.100 0.900 12 C 0.133 3.867 13 N -0.845 5.845 14 Si 0.920 3.080 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.264 1.264 18 C -0.183 4.183 19 C -0.175 4.175 20 C -0.167 4.167 21 H 0.081 0.919 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.405 0.595 30 H 0.290 0.710 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -2.783 -15.184 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.291 6.291 3 C 0.099 3.901 4 C -0.199 4.199 5 C -0.019 4.019 6 N -0.886 5.886 7 S 2.816 3.184 8 O -0.998 6.998 9 O -0.998 6.998 10 C -1.154 5.154 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.475 5.475 14 Si 0.744 3.256 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.188 1.188 18 C -0.202 4.202 19 C -0.212 4.212 20 C -0.204 4.204 21 H 0.099 0.901 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.237 0.763 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.473 -2.427 -14.585 14.859 hybrid contribution -1.815 -0.039 0.301 1.840 sum -3.288 -2.466 -14.284 14.864 Atomic orbital electron populations 1.22750 0.81575 1.02467 1.00297 1.87933 1.19601 1.26750 1.94775 1.21167 0.94132 0.82937 0.91908 1.21872 0.92385 1.02998 1.02629 1.21531 0.97739 0.96641 0.85993 1.55873 1.76257 1.28878 1.27594 1.00335 0.76203 0.72183 0.69666 1.93373 1.78612 1.64383 1.63407 1.93350 1.81123 1.40629 1.84686 1.30565 1.17283 1.53646 1.13882 0.88142 1.24740 0.99653 0.89798 0.94331 1.69895 1.31777 1.33047 1.12804 0.86181 0.81849 0.78501 0.79108 1.19209 1.19981 1.18759 1.22830 1.00791 1.04148 0.92400 1.23131 0.98967 0.95823 1.03231 1.22862 1.03579 0.98513 0.95442 0.90090 0.93166 0.94107 0.90389 0.91131 0.92006 0.89769 0.92052 0.76323 0.89923 0.87450 0.88763 0.87789 0.88462 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.33 101.05 1.04 1.36 16 2 O -0.37 -5.37 10.12 -35.23 -0.36 -5.73 16 3 C 0.14 1.95 0.62 -90.62 -0.06 1.90 16 4 C -0.14 -1.87 7.28 37.15 0.27 -1.60 16 5 C 0.11 1.88 5.07 -4.04 -0.02 1.86 16 6 N -1.13 -22.85 5.40 -10.61 -0.06 -22.91 16 7 S 2.72 72.45 5.02 -107.50 -0.54 71.91 16 8 O -1.01 -29.92 18.02 -57.17 -1.03 -30.95 16 9 O -1.01 -29.37 17.49 -57.17 -1.00 -30.37 16 10 C -1.02 -28.20 9.72 30.60 0.30 -27.90 16 11 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 12 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 13 N -0.85 -25.06 13.19 55.43 0.73 -24.33 16 14 Si 0.92 20.66 29.54 -169.99 -5.02 15.64 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 18 C -0.18 -2.13 3.77 -90.62 -0.34 -2.47 16 19 C -0.17 -1.77 9.65 -26.73 -0.26 -2.03 16 20 C -0.17 -1.64 9.85 -26.73 -0.26 -1.91 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.66 6.25 -51.92 -0.32 0.33 16 23 H 0.04 0.43 7.12 -51.93 -0.37 0.06 16 24 H 0.08 0.98 6.74 -51.93 -0.35 0.63 16 25 H 0.07 0.99 6.89 -51.93 -0.36 0.63 16 26 H 0.06 0.70 6.96 -51.93 -0.36 0.34 16 27 H 0.08 1.51 7.75 -51.93 -0.40 1.10 16 28 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 29 H 0.40 7.47 7.58 -34.47 -0.26 7.21 16 30 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.11 1.21 8.02 -51.93 -0.42 0.79 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.03 5.89 -51.93 -0.31 0.73 16 34 H 0.10 0.97 7.29 -51.93 -0.38 0.60 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 299.24 15.07 4.51 4.51 Total: -1.00 -34.86 299.24 -6.86 -41.72 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.67 Total: 7.66 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 0.57 Total: -27.15 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.67 Total: -47.24 kcal Atomic # 8 Polarization: -64.66 SS G_CDS: -2.39 Total: -67.04 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 72.45 SS G_CDS: -0.54 Total: 71.91 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.86 -6.86 -41.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.640 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds