Wall clock time and date at job start Mon Mar 30 2020 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00313 * 2 1 4 4 C 1.52994 * 109.47463 * 185.30578 * 3 2 1 5 5 C 1.53004 * 109.46704 * 65.30623 * 3 2 1 6 6 N 1.46494 * 109.47105 * 65.00073 * 5 3 2 7 7 S 1.65605 * 119.99907 * 164.99763 * 6 5 3 8 8 O 1.42102 * 106.40133 * 178.53621 * 7 6 5 9 9 O 1.42094 * 106.40201 * 311.46325 * 7 6 5 10 10 C 1.76209 * 107.21718 * 65.00085 * 7 6 5 11 11 H 1.07998 * 119.99366 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99989 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00084 * 359.97438 * 12 10 7 14 14 Si 1.86796 * 119.99996 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47341 * 89.99685 * 14 12 10 16 16 H 1.48502 * 109.47283 * 209.99743 * 14 12 10 17 17 H 1.48499 * 109.47138 * 330.00035 * 14 12 10 18 18 C 1.53001 * 109.47436 * 305.31048 * 3 2 1 19 19 C 1.52998 * 117.51824 * 226.36494 * 18 3 2 20 20 C 1.52999 * 60.00320 * 107.47466 * 19 18 3 21 21 H 1.08993 * 109.47144 * 184.79111 * 1 2 3 22 22 H 1.09007 * 109.46633 * 304.78700 * 1 2 3 23 23 H 1.09002 * 109.47464 * 64.78352 * 1 2 3 24 24 H 1.09004 * 109.47414 * 180.02562 * 4 3 2 25 25 H 1.09000 * 109.46921 * 300.00238 * 4 3 2 26 26 H 1.08998 * 109.47287 * 60.00276 * 4 3 2 27 27 H 1.09005 * 109.46822 * 185.00611 * 5 3 2 28 28 H 1.09001 * 109.46873 * 304.99622 * 5 3 2 29 29 H 0.96992 * 120.00224 * 344.99927 * 6 5 3 30 30 H 0.96996 * 120.00403 * 180.02562 * 13 12 10 31 31 H 1.08997 * 115.55064 * 80.65352 * 18 3 2 32 32 H 1.09005 * 117.49863 * 214.96971 * 19 18 3 33 33 H 1.09004 * 117.49764 * 359.97438 * 19 18 3 34 34 H 1.08999 * 117.49881 * 252.50738 * 20 19 18 35 35 H 1.08999 * 117.49520 * 107.49466 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5298 1.1871 -0.1334 5 6 1.6672 2.0164 1.3107 6 7 2.2985 1.3110 2.4286 7 16 2.4168 2.0436 3.9091 8 8 3.0365 1.1021 4.7744 9 8 2.9395 3.3436 3.6728 10 6 0.7765 2.2690 4.5121 11 1 -0.0658 1.9422 3.9205 12 6 0.5685 2.8633 5.7386 13 7 1.5944 3.2616 6.4587 14 14 -1.1703 3.1016 6.3782 15 1 -1.5760 1.9094 7.1652 16 1 -1.2183 4.3066 7.2447 17 1 -2.0991 3.2780 5.2330 18 6 1.4561 2.1105 -1.1771 19 6 2.4561 2.8896 -2.0339 20 6 1.7965 1.6250 -2.5876 21 1 -0.3633 -1.0240 0.0858 22 1 -0.3633 0.5864 0.8441 23 1 -0.3634 0.4378 -0.9297 24 1 3.9733 2.1829 -0.1329 25 1 3.9246 0.6136 0.7053 26 1 3.7743 0.6806 -1.0671 27 1 2.0341 3.0422 1.2744 28 1 0.5859 2.0221 1.4486 29 1 2.6472 0.4148 2.3018 30 1 1.4481 3.6794 7.3218 31 1 0.4732 2.5550 -1.0214 32 1 2.1310 3.8467 -2.4417 33 1 3.5091 2.8289 -1.7587 34 1 2.4155 0.7323 -2.6769 35 1 1.0375 1.7502 -3.3598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308860076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:38 Heat of formation + Delta-G solvation = -141.230430 kcal Electronic energy + Delta-G solvation = -19040.120570 eV Core-core repulsion = 15971.526493 eV Total energy + Delta-G solvation = -3068.594077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75914 -37.40470 -37.05219 -36.14404 -35.71184 -35.14011 -31.43113 -28.29283 -27.95177 -26.96568 -23.99854 -23.11914 -21.10495 -20.21272 -19.30616 -18.32567 -17.63543 -17.47438 -16.84702 -16.43360 -16.02094 -15.83506 -15.70624 -15.12939 -14.56085 -14.08407 -13.93858 -13.59077 -13.43752 -13.24178 -13.02091 -12.68017 -12.60521 -12.51073 -12.42486 -12.30986 -12.29452 -12.04453 -11.59006 -11.25779 -11.25399 -11.06427 -11.01577 -10.50642 -10.09208 -8.75951 -7.49120 0.36057 1.33282 1.33983 1.49792 2.19986 2.57356 2.64553 3.00043 3.18237 3.53217 3.72291 3.80472 3.96078 4.13042 4.21208 4.36567 4.48654 4.53993 4.62218 4.65178 4.76230 4.82949 4.86844 4.91390 5.02264 5.05892 5.08684 5.21717 5.30934 5.33796 5.39278 5.88454 6.28463 6.39936 6.77397 8.20652 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.006350 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.332603 B = 4408.383767 C = 4749.500650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.385 6.385 3 C 0.145 3.855 4 C -0.146 4.146 5 C 0.099 3.901 6 N -1.114 6.114 7 S 2.722 3.278 8 O -1.047 7.047 9 O -1.041 7.041 10 C -1.040 5.040 11 H 0.119 0.881 12 C 0.069 3.931 13 N -0.894 5.894 14 Si 0.991 3.009 15 H -0.256 1.256 16 H -0.262 1.262 17 H -0.246 1.246 18 C -0.199 4.199 19 C -0.174 4.174 20 C -0.151 4.151 21 H 0.094 0.906 22 H 0.038 0.962 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.414 0.586 30 H 0.299 0.701 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -2.952 -16.806 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.304 6.304 3 C 0.105 3.895 4 C -0.203 4.203 5 C -0.028 4.028 6 N -0.874 5.874 7 S 2.823 3.177 8 O -1.037 7.037 9 O -1.031 7.031 10 C -1.173 5.173 11 H 0.137 0.863 12 C -0.144 4.144 13 N -0.526 5.526 14 Si 0.809 3.191 15 H -0.180 1.180 16 H -0.186 1.186 17 H -0.169 1.169 18 C -0.218 4.218 19 C -0.210 4.210 20 C -0.188 4.188 21 H 0.113 0.887 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.248 0.752 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.310 -2.609 -16.225 16.763 hybrid contribution -1.201 -0.017 0.726 1.404 sum -4.512 -2.626 -15.499 16.354 Atomic orbital electron populations 1.22909 0.80558 1.03389 1.00796 1.87918 1.20806 1.26867 1.94787 1.21075 0.94654 0.82951 0.90866 1.21932 0.91967 1.03269 1.03114 1.21841 0.97834 0.96433 0.86713 1.55254 1.76459 1.29173 1.26505 0.99818 0.76093 0.71411 0.70423 1.93309 1.79549 1.65084 1.65757 1.93298 1.81824 1.42454 1.85517 1.30892 1.18009 1.53794 1.14635 0.86294 1.26034 1.04852 0.89004 0.94518 1.69989 1.34604 1.34211 1.13754 0.85125 0.75604 0.79244 0.79169 1.17987 1.18627 1.16943 1.22744 1.01430 1.05273 0.92386 1.23240 0.98695 0.96669 1.02432 1.22926 1.03465 0.98207 0.94169 0.88729 0.94372 0.92176 0.90074 0.92593 0.89920 0.90709 0.91422 0.75172 0.89091 0.87044 0.87552 0.87790 0.88472 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.33 113.37 1.17 1.61 16 2 O -0.38 -10.49 10.12 -148.98 -1.51 -12.00 16 3 C 0.15 3.90 0.62 -10.79 -0.01 3.89 16 4 C -0.15 -3.69 7.28 71.98 0.52 -3.17 16 5 C 0.10 3.38 5.07 86.38 0.44 3.82 16 6 N -1.11 -45.46 5.40 -187.49 -1.01 -46.47 16 7 S 2.72 148.51 5.02 -56.49 -0.28 148.23 16 8 O -1.05 -64.06 18.02 -128.00 -2.31 -66.37 16 9 O -1.04 -62.45 17.49 -128.00 -2.24 -64.69 16 10 C -1.04 -57.57 9.72 67.73 0.66 -56.92 16 11 H 0.12 5.91 7.81 -2.91 -0.02 5.88 16 12 C 0.07 3.84 5.46 84.65 0.46 4.31 16 13 N -0.89 -53.83 13.19 21.45 0.28 -53.54 16 14 Si 0.99 41.30 29.54 68.60 2.03 43.33 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 17 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 18 C -0.20 -4.22 3.77 -10.79 -0.04 -4.26 16 19 C -0.17 -3.09 9.65 30.59 0.30 -2.80 16 20 C -0.15 -2.50 9.85 30.60 0.30 -2.20 16 21 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.04 0.95 6.25 -2.38 -0.01 0.93 16 23 H 0.06 1.12 7.12 -2.39 -0.02 1.10 16 24 H 0.08 1.97 6.74 -2.38 -0.02 1.95 16 25 H 0.06 1.56 6.89 -2.39 -0.02 1.54 16 26 H 0.08 1.72 6.96 -2.39 -0.02 1.70 16 27 H 0.07 2.70 7.75 -2.38 -0.02 2.68 16 28 H 0.07 2.22 6.34 -2.39 -0.02 2.21 16 29 H 0.41 15.42 7.58 -96.75 -0.73 14.69 16 30 H 0.30 16.12 8.31 -92.71 -0.77 15.35 16 31 H 0.11 2.26 8.02 -2.39 -0.02 2.24 16 32 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.10 1.85 5.89 -2.38 -0.01 1.84 16 34 H 0.10 1.64 7.29 -2.39 -0.02 1.63 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -75.50 299.24 -0.87 -76.37 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.37 Total: 30.87 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 3.80 Total: -55.72 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -0.73 Total: -100.02 kcal Atomic # 8 Polarization: -137.00 SS G_CDS: -6.05 Total: -143.06 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 148.51 SS G_CDS: -0.28 Total: 148.23 kcal Total: -75.50 -0.87 -76.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.862 kcal (2) G-P(sol) polarization free energy of solvation -75.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds