Wall clock time and date at job start Mon Mar 30 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42908 * 114.00140 * 2 1 4 4 H 1.09002 * 109.46711 * 24.27917 * 3 2 1 5 5 C 1.53005 * 109.46801 * 144.26894 * 3 2 1 6 6 H 1.09003 * 109.46639 * 184.99996 * 5 3 2 7 7 C 1.52992 * 109.47617 * 305.00281 * 5 3 2 8 8 N 1.46498 * 109.46858 * 65.00651 * 5 3 2 9 9 S 1.65597 * 120.00062 * 144.99706 * 8 5 3 10 10 O 1.42102 * 106.40266 * 311.45767 * 9 8 5 11 11 O 1.42096 * 106.40500 * 178.53858 * 9 8 5 12 12 C 1.76202 * 107.21947 * 64.99482 * 9 8 5 13 13 H 1.07997 * 120.00149 * 0.02562 * 12 9 8 14 14 C 1.37880 * 120.00175 * 179.97438 * 12 9 8 15 15 N 1.31509 * 119.99889 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00048 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.46981 * 90.00112 * 16 14 12 18 18 H 1.48499 * 109.47317 * 210.00286 * 16 14 12 19 19 H 1.48500 * 109.47107 * 330.00649 * 16 14 12 20 20 C 1.52996 * 109.47176 * 264.27153 * 3 2 1 21 21 C 1.52997 * 117.49449 * 134.54431 * 20 3 2 22 22 C 1.52998 * 117.49750 * 65.88750 * 20 3 2 23 23 H 1.09003 * 109.46963 * 305.26448 * 1 2 3 24 24 H 1.08993 * 109.46998 * 65.26506 * 1 2 3 25 25 H 1.08999 * 109.47066 * 185.27056 * 1 2 3 26 26 H 1.09001 * 109.47325 * 300.00230 * 7 5 3 27 27 H 1.09006 * 109.47012 * 59.99757 * 7 5 3 28 28 H 1.08998 * 109.47288 * 180.02562 * 7 5 3 29 29 H 0.97002 * 120.00210 * 324.99596 * 8 5 3 30 30 H 0.97005 * 120.00230 * 180.02562 * 15 14 12 31 31 H 1.09000 * 115.54916 * 280.21198 * 20 3 2 32 32 H 1.08998 * 117.50650 * 359.97438 * 21 20 3 33 33 H 1.09006 * 117.49777 * 145.02461 * 21 20 3 34 34 H 1.09008 * 117.49693 * 214.97916 * 22 20 3 35 35 H 1.09001 * 117.49880 * 359.97093 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3022 2.0184 0.4226 5 6 3.2874 1.2950 0.8424 6 1 3.6825 2.3083 0.9159 7 6 2.9701 0.7685 2.2434 8 7 4.2833 0.4274 0.2086 9 16 5.8910 0.8162 0.2888 10 8 5.9921 2.1842 -0.0822 11 8 6.5894 -0.2243 -0.3811 12 6 6.3661 0.7237 1.9830 13 1 5.6394 0.4500 2.7335 14 6 7.6660 0.9999 2.3506 15 7 8.5512 1.3328 1.4367 16 14 8.1699 0.9012 4.1466 17 1 8.6375 -0.4742 4.4547 18 1 9.2674 1.8671 4.4067 19 1 7.0051 1.2321 5.0064 20 6 2.3492 1.7129 -1.4352 21 6 1.9626 3.1252 -1.8786 22 6 1.1840 1.9172 -2.4055 23 1 -0.3633 0.5933 0.8391 24 1 -0.3633 0.4300 -0.9333 25 1 -0.3633 -1.0233 0.0944 26 1 2.2291 1.4140 2.7150 27 1 2.5750 -0.2447 2.1699 28 1 3.8799 0.7615 2.8436 29 1 4.0010 -0.3747 -0.2580 30 1 9.4658 1.5267 1.6952 31 1 3.2715 1.2938 -1.8375 32 1 1.4665 3.7641 -1.1481 33 1 2.6304 3.6352 -2.5731 34 1 1.3398 1.6329 -3.4462 35 1 0.1759 1.7610 -2.0214 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388285144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:39 Heat of formation + Delta-G solvation = -116.594994 kcal Electronic energy + Delta-G solvation = -19108.177021 eV Core-core repulsion = 16040.651216 eV Total energy + Delta-G solvation = -3067.525804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.15412 -35.92809 -35.28206 -34.81200 -33.86035 -33.04051 -29.35823 -27.61390 -26.08028 -25.56151 -22.35510 -21.33860 -20.22654 -18.98022 -17.56538 -16.57652 -16.23456 -15.89383 -15.38976 -14.75528 -14.61007 -14.27072 -13.93048 -13.39484 -13.26385 -12.79570 -12.45434 -12.00792 -11.86598 -11.62530 -11.41958 -11.38107 -11.18487 -11.02263 -10.71376 -10.51786 -10.30444 -10.20724 -10.11150 -10.09611 -9.94294 -9.36613 -9.19869 -8.86967 -8.41105 -6.64720 -5.25515 2.44605 3.09726 3.16581 3.22551 3.63972 4.08869 4.12699 4.66516 4.70373 4.84714 4.94976 5.13154 5.17896 5.32224 5.36122 5.41556 5.57507 5.61159 5.75507 5.78851 5.87118 5.94978 6.07043 6.10864 6.17645 6.36554 6.41589 6.61793 6.77568 6.97447 7.32998 7.40692 8.03491 8.11619 8.95060 10.29378 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.006672 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.772827 B = 4195.347500 C = 4637.668523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.117 3.883 4 H 0.067 0.933 5 C 0.164 3.836 6 H 0.100 0.900 7 C -0.174 4.174 8 N -1.125 6.125 9 S 2.715 3.285 10 O -1.008 7.008 11 O -1.009 7.009 12 C -1.021 5.021 13 H 0.106 0.894 14 C 0.133 3.867 15 N -0.846 5.846 16 Si 0.918 3.082 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.166 4.166 21 C -0.173 4.173 22 C -0.183 4.183 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.406 0.594 30 H 0.290 0.710 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.263 0.819 -0.863 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.289 6.289 3 C 0.058 3.942 4 H 0.085 0.915 5 C 0.055 3.945 6 H 0.118 0.882 7 C -0.233 4.233 8 N -0.879 5.879 9 S 2.814 3.186 10 O -0.998 6.998 11 O -1.000 7.000 12 C -1.154 5.154 13 H 0.124 0.876 14 C -0.085 4.085 15 N -0.476 5.476 16 Si 0.742 3.258 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.185 4.185 21 C -0.210 4.210 22 C -0.220 4.220 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.238 0.762 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.382 1.114 -1.593 14.512 hybrid contribution -0.144 -0.298 1.331 1.371 sum -14.525 0.817 -0.262 14.551 Atomic orbital electron populations 1.22867 0.81991 1.02351 0.99647 1.87935 1.18711 1.27478 1.94792 1.22011 0.94830 0.84579 0.92825 0.91510 1.20665 0.87348 0.95183 0.91286 0.88186 1.22379 1.02584 1.01804 0.96553 1.55909 1.25626 1.36197 1.70186 1.00389 0.69065 0.72727 0.76406 1.93355 1.84687 1.36539 1.85190 1.93369 1.70261 1.59142 1.77212 1.30704 1.03949 1.61844 1.18874 0.87606 1.24738 0.94623 0.88897 1.00201 1.69903 1.05204 1.37464 1.35064 0.86205 0.78758 0.78810 0.82006 1.19274 1.20079 1.18686 1.22795 1.00085 0.99823 0.95779 1.22964 1.03468 0.90784 1.03781 1.22955 0.96317 1.03342 0.99369 0.94352 0.94119 0.90027 0.92936 0.91650 0.90543 0.76245 0.90002 0.86688 0.88863 0.88390 0.88904 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.73 101.05 1.08 1.37 16 2 O -0.37 -5.16 9.16 -35.23 -0.32 -5.48 16 3 C 0.12 1.67 2.17 -26.73 -0.06 1.61 16 4 H 0.07 0.81 7.46 -51.93 -0.39 0.42 16 5 C 0.16 2.84 2.82 -67.93 -0.19 2.65 16 6 H 0.10 1.83 7.50 -51.93 -0.39 1.44 16 7 C -0.17 -2.75 9.32 37.15 0.35 -2.41 16 8 N -1.13 -22.75 4.43 -4.89 -0.02 -22.77 16 9 S 2.71 72.04 5.00 -107.50 -0.54 71.50 16 10 O -1.01 -29.10 17.36 -57.17 -0.99 -30.10 16 11 O -1.01 -30.05 18.02 -57.17 -1.03 -31.08 16 12 C -1.02 -27.87 9.57 30.60 0.29 -27.57 16 13 H 0.11 2.62 5.62 -52.49 -0.29 2.32 16 14 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 15 N -0.85 -25.05 13.19 55.43 0.73 -24.32 16 16 Si 0.92 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 20 C -0.17 -2.43 5.18 -90.62 -0.47 -2.90 16 21 C -0.17 -2.18 10.18 -26.70 -0.27 -2.45 16 22 C -0.18 -2.13 9.87 -26.70 -0.26 -2.39 16 23 H 0.04 0.34 7.98 -51.93 -0.41 -0.07 16 24 H 0.04 0.37 5.77 -51.93 -0.30 0.07 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.00 7.56 -51.93 -0.39 0.60 16 28 H 0.08 1.35 5.74 -51.93 -0.30 1.05 16 29 H 0.41 7.59 8.58 -34.47 -0.30 7.30 16 30 H 0.29 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.12 1.94 7.37 -51.93 -0.38 1.56 16 32 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.09 0.91 6.07 -51.93 -0.32 0.60 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -34.60 301.92 -6.99 -41.59 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.72 Total: 8.99 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 0.37 Total: -28.48 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.71 Total: -47.09 kcal Atomic # 8 Polarization: -64.31 SS G_CDS: -2.35 Total: -66.65 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 72.04 SS G_CDS: -0.54 Total: 71.50 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.60 -6.99 -41.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388285144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.003 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds