Wall clock time and date at job start Mon Mar 30 2020 04:59:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47124 * 2 1
4 4 N 1.46497 * 109.47566 * 239.99126 * 2 1 3
5 5 S 1.65608 * 119.99652 * 95.00133 * 4 2 1
6 6 O 1.42104 * 106.39724 * 178.54027 * 5 4 2
7 7 O 1.42097 * 106.40199 * 311.45938 * 5 4 2
8 8 C 1.76195 * 107.21632 * 65.00196 * 5 4 2
9 9 H 1.08001 * 120.00866 * 359.97438 * 8 5 4
10 10 C 1.37878 * 119.99874 * 179.97438 * 8 5 4
11 11 N 1.31516 * 120.00340 * 180.02562 * 10 8 5
12 12 Si 1.86802 * 120.00151 * 359.97438 * 10 8 5
13 13 H 1.48503 * 109.46898 * 89.99759 * 12 10 8
14 14 H 1.48497 * 109.47266 * 210.00322 * 12 10 8
15 15 H 1.48500 * 109.47080 * 330.00395 * 12 10 8
16 16 C 1.53005 * 109.46974 * 119.99026 * 2 1 3
17 17 H 1.08997 * 109.52514 * 180.02562 * 16 2 1
18 18 C 1.53181 * 109.52321 * 300.13399 * 16 2 1
19 19 C 1.53171 * 109.03581 * 176.88587 * 18 16 2
20 20 C 1.53097 * 109.16435 * 303.01657 * 19 18 16
21 21 O 1.42898 * 109.41502 * 57.60564 * 20 19 18
22 22 C 1.42914 * 114.15673 * 298.87931 * 21 20 19
23 23 H 1.09002 * 109.46924 * 60.01154 * 1 2 3
24 24 H 1.09002 * 109.47124 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47495 * 300.00699 * 1 2 3
26 26 H 0.96997 * 120.00126 * 275.00057 * 4 2 1
27 27 H 0.96998 * 120.00705 * 180.02562 * 11 10 8
28 28 H 1.08999 * 109.53869 * 296.74594 * 18 16 2
29 29 H 1.09001 * 109.54570 * 56.92677 * 18 16 2
30 30 H 1.09003 * 109.52516 * 62.91561 * 19 18 16
31 31 H 1.08998 * 109.52663 * 183.11313 * 19 18 16
32 32 H 1.09000 * 109.48279 * 177.59460 * 20 19 18
33 33 H 1.09003 * 109.47757 * 297.63042 * 20 19 18
34 34 H 1.08997 * 109.42867 * 301.10608 * 22 21 20
35 35 H 1.09003 * 109.53771 * 181.07275 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6908 -1.1960
5 16 2.4123 0.1770 -2.5504
6 8 2.8779 -0.7639 -3.5083
7 8 1.3248 1.0590 -2.7923
8 6 3.7928 1.1908 -2.1371
9 1 4.2099 1.1556 -1.1415
10 6 4.3407 2.0291 -3.0847
11 7 5.3715 2.7855 -2.7764
12 14 3.6199 2.0896 -4.8070
13 1 2.5585 3.1267 -4.8632
14 1 4.6906 2.4237 -5.7802
15 1 3.0375 0.7665 -5.1466
16 6 2.0399 -0.7211 1.2494
17 1 3.1299 -0.7212 1.2506
18 6 1.5272 -0.0016 2.5008
19 6 1.9788 -0.7762 3.7427
20 6 1.4677 -2.2164 3.6501
21 8 1.9557 -2.8173 2.4490
22 6 1.5276 -2.1638 1.2523
23 1 -0.3633 0.5137 -0.8901
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5139 0.8899
26 1 2.1111 -1.6563 -1.1946
27 1 5.7568 3.3756 -3.4429
28 1 1.9348 1.0088 2.5331
29 1 0.4385 0.0450 2.4743
30 1 3.0676 -0.7789 3.7945
31 1 1.5718 -0.3021 4.6357
32 1 1.8220 -2.7839 4.5106
33 1 0.3777 -2.2152 3.6390
34 1 0.4385 -2.1629 1.2093
35 1 1.9253 -2.6924 0.3860
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000389139576.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:59:47
Heat of formation + Delta-G solvation = -141.446898 kcal
Electronic energy + Delta-G solvation = -19098.412014 eV
Core-core repulsion = 16029.808550 eV
Total energy + Delta-G solvation = -3068.603464 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.69173 -36.41136 -35.52758 -34.40813 -33.19604 -33.00938 -30.73885 -28.47099
-26.41885 -25.07472 -24.34446 -21.54818 -19.39640 -19.15538 -17.49490 -16.81604
-16.34102 -15.95024 -15.47913 -15.03676 -14.75102 -14.40630 -13.91875 -13.59218
-13.48404 -13.05610 -12.80484 -12.60707 -12.56285 -11.92039 -11.59546 -11.40890
-11.25696 -11.01283 -10.90254 -10.79860 -10.59533 -10.49861 -10.37104 -10.24797
-9.79236 -9.35289 -9.23155 -9.20773 -8.62458 -6.80214 -5.33978 2.09391
3.07649 3.17928 3.27450 3.84723 3.95596 4.28480 4.60361 4.73913
4.81786 4.85744 4.91592 5.14433 5.27788 5.33963 5.41095 5.53470
5.55627 5.58361 5.70103 5.82909 5.86463 5.96505 6.07814 6.11995
6.13968 6.24036 6.35810 6.63529 6.71429 7.18429 7.47703 7.73189
8.20713 8.70999 10.32067
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.034586 B = 0.006172 C = 0.005865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 809.373579 B = 4535.814621 C = 4772.792669
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.164 3.836
3 H 0.095 0.905
4 N -1.121 6.121
5 S 2.675 3.325
6 O -1.010 7.010
7 O -1.010 7.010
8 C -1.016 5.016
9 H 0.121 0.879
10 C 0.153 3.847
11 N -0.824 5.824
12 Si 0.802 3.198
13 H -0.246 1.246
14 H -0.256 1.256
15 H -0.220 1.220
16 C -0.129 4.129
17 H 0.089 0.911
18 C -0.120 4.120
19 C -0.156 4.156
20 C 0.060 3.940
21 O -0.384 6.384
22 C 0.063 3.937
23 H 0.074 0.926
24 H 0.056 0.944
25 H 0.063 0.937
26 H 0.403 0.597
27 H 0.280 0.720
28 H 0.073 0.927
29 H 0.070 0.930
30 H 0.072 0.928
31 H 0.071 0.929
32 H 0.089 0.911
33 H 0.047 0.953
34 H 0.056 0.944
35 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.979 -6.165 11.341 15.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.056 3.944
3 H 0.113 0.887
4 N -0.876 5.876
5 S 2.777 3.223
6 O -1.001 7.001
7 O -1.000 7.000
8 C -1.150 5.150
9 H 0.139 0.861
10 C -0.066 4.066
11 N -0.453 5.453
12 Si 0.622 3.378
13 H -0.170 1.170
14 H -0.180 1.180
15 H -0.142 1.142
16 C -0.149 4.149
17 H 0.108 0.892
18 C -0.158 4.158
19 C -0.193 4.193
20 C -0.017 4.017
21 O -0.302 6.302
22 C -0.014 4.014
23 H 0.093 0.907
24 H 0.075 0.925
25 H 0.082 0.918
26 H 0.235 0.765
27 H 0.091 0.909
28 H 0.092 0.908
29 H 0.088 0.912
30 H 0.091 0.909
31 H 0.090 0.910
32 H 0.107 0.893
33 H 0.066 0.934
34 H 0.074 0.926
35 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -8.205 -6.060 10.468 14.616
hybrid contribution 0.350 0.343 -0.256 0.553
sum -7.855 -5.718 10.212 14.095
Atomic orbital electron populations
1.22478 0.96006 1.02037 1.03051 1.20545 0.93647 0.96664 0.83579
0.88701 1.55660 1.83535 1.18377 1.29991 1.01359 0.75729 0.74013
0.71232 1.93474 1.82835 1.64628 1.59119 1.93403 1.56647 1.66005
1.83941 1.30477 1.35249 1.39748 1.09564 0.86106 1.24429 0.92361
0.91453 0.98399 1.69988 1.19148 1.20347 1.35797 0.87855 0.81673
0.83920 0.84333 1.17020 1.17959 1.14227 1.22079 1.02395 0.95722
0.94739 0.89240 1.21711 1.01250 0.99559 0.93312 1.22189 1.02299
0.96320 0.98525 1.22559 0.97797 0.93564 0.87783 1.87925 1.74463
1.53970 1.13890 1.22732 0.98770 0.92553 0.87333 0.90716 0.92549
0.91847 0.76504 0.90930 0.90837 0.91171 0.90946 0.91024 0.89271
0.93430 0.92596 0.88795
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.48 8.82 37.16 0.33 -2.16 16
2 C 0.16 2.62 2.61 -67.93 -0.18 2.45 16
3 H 0.09 1.66 7.85 -51.93 -0.41 1.26 16
4 N -1.12 -20.73 5.44 -4.89 -0.03 -20.75 16
5 S 2.68 65.63 4.15 -107.50 -0.45 65.18 16
6 O -1.01 -27.03 16.02 -57.17 -0.92 -27.94 16
7 O -1.01 -26.25 16.10 -57.17 -0.92 -27.17 16
8 C -1.02 -28.03 10.12 30.60 0.31 -27.72 16
9 H 0.12 3.35 8.06 -52.49 -0.42 2.93 16
10 C 0.15 4.38 5.47 -17.82 -0.10 4.29 16
11 N -0.82 -23.74 13.96 55.43 0.77 -22.97 16
12 Si 0.80 20.61 26.54 -169.99 -4.51 16.10 16
13 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16
14 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16
15 H -0.22 -5.77 5.60 56.52 0.32 -5.46 16
16 C -0.13 -1.74 2.40 -90.47 -0.22 -1.96 16
17 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
18 C -0.12 -1.35 5.04 -26.55 -0.13 -1.48 16
19 C -0.16 -1.53 6.14 -26.59 -0.16 -1.69 16
20 C 0.06 0.60 6.84 37.21 0.25 0.86 16
21 O -0.38 -5.03 10.76 -35.23 -0.38 -5.40 16
22 C 0.06 0.79 5.61 37.21 0.21 1.00 16
23 H 0.07 1.21 7.64 -51.93 -0.40 0.82 16
24 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16
25 H 0.06 0.73 6.36 -51.93 -0.33 0.40 16
26 H 0.40 6.43 7.09 -34.48 -0.24 6.18 16
27 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16
28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.07 0.70 6.28 -51.93 -0.33 0.38 16
30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
34 H 0.06 0.63 6.30 -51.93 -0.33 0.31 16
35 H 0.09 1.17 6.62 -51.93 -0.34 0.83 16
LS Contribution 285.55 15.07 4.30 4.30
Total: -1.00 -32.65 285.55 -6.70 -39.35
By element:
Atomic # 1 Polarization: 10.62 SS G_CDS: -4.89 Total: 5.74 kcal
Atomic # 6 Polarization: -26.73 SS G_CDS: 0.31 Total: -26.42 kcal
Atomic # 7 Polarization: -44.47 SS G_CDS: 0.75 Total: -43.72 kcal
Atomic # 8 Polarization: -58.31 SS G_CDS: -2.22 Total: -60.52 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -4.51 Total: 16.10 kcal
Atomic # 16 Polarization: 65.63 SS G_CDS: -0.45 Total: 65.18 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -32.65 -6.70 -39.35 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389139576.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.099 kcal
(2) G-P(sol) polarization free energy of solvation -32.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.447 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds