Wall clock time and date at job start Mon Mar 30 2020 04:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47124 * 2 1 4 4 N 1.46497 * 109.47566 * 239.99126 * 2 1 3 5 5 S 1.65608 * 119.99652 * 95.00133 * 4 2 1 6 6 O 1.42104 * 106.39724 * 178.54027 * 5 4 2 7 7 O 1.42097 * 106.40199 * 311.45938 * 5 4 2 8 8 C 1.76195 * 107.21632 * 65.00196 * 5 4 2 9 9 H 1.08001 * 120.00866 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99874 * 179.97438 * 8 5 4 11 11 N 1.31516 * 120.00340 * 180.02562 * 10 8 5 12 12 Si 1.86802 * 120.00151 * 359.97438 * 10 8 5 13 13 H 1.48503 * 109.46898 * 89.99759 * 12 10 8 14 14 H 1.48497 * 109.47266 * 210.00322 * 12 10 8 15 15 H 1.48500 * 109.47080 * 330.00395 * 12 10 8 16 16 C 1.53005 * 109.46974 * 119.99026 * 2 1 3 17 17 H 1.08997 * 109.52514 * 180.02562 * 16 2 1 18 18 C 1.53181 * 109.52321 * 300.13399 * 16 2 1 19 19 C 1.53171 * 109.03581 * 176.88587 * 18 16 2 20 20 C 1.53097 * 109.16435 * 303.01657 * 19 18 16 21 21 O 1.42898 * 109.41502 * 57.60564 * 20 19 18 22 22 C 1.42914 * 114.15673 * 298.87931 * 21 20 19 23 23 H 1.09002 * 109.46924 * 60.01154 * 1 2 3 24 24 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47495 * 300.00699 * 1 2 3 26 26 H 0.96997 * 120.00126 * 275.00057 * 4 2 1 27 27 H 0.96998 * 120.00705 * 180.02562 * 11 10 8 28 28 H 1.08999 * 109.53869 * 296.74594 * 18 16 2 29 29 H 1.09001 * 109.54570 * 56.92677 * 18 16 2 30 30 H 1.09003 * 109.52516 * 62.91561 * 19 18 16 31 31 H 1.08998 * 109.52663 * 183.11313 * 19 18 16 32 32 H 1.09000 * 109.48279 * 177.59460 * 20 19 18 33 33 H 1.09003 * 109.47757 * 297.63042 * 20 19 18 34 34 H 1.08997 * 109.42867 * 301.10608 * 22 21 20 35 35 H 1.09003 * 109.53771 * 181.07275 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 16 2.4123 0.1770 -2.5504 6 8 2.8779 -0.7639 -3.5083 7 8 1.3248 1.0590 -2.7923 8 6 3.7928 1.1908 -2.1371 9 1 4.2099 1.1556 -1.1415 10 6 4.3407 2.0291 -3.0847 11 7 5.3715 2.7855 -2.7764 12 14 3.6199 2.0896 -4.8070 13 1 2.5585 3.1267 -4.8632 14 1 4.6906 2.4237 -5.7802 15 1 3.0375 0.7665 -5.1466 16 6 2.0399 -0.7211 1.2494 17 1 3.1299 -0.7212 1.2506 18 6 1.5272 -0.0016 2.5008 19 6 1.9788 -0.7762 3.7427 20 6 1.4677 -2.2164 3.6501 21 8 1.9557 -2.8173 2.4490 22 6 1.5276 -2.1638 1.2523 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.1111 -1.6563 -1.1946 27 1 5.7568 3.3756 -3.4429 28 1 1.9348 1.0088 2.5331 29 1 0.4385 0.0450 2.4743 30 1 3.0676 -0.7789 3.7945 31 1 1.5718 -0.3021 4.6357 32 1 1.8220 -2.7839 4.5106 33 1 0.3777 -2.2152 3.6390 34 1 0.4385 -2.1629 1.2093 35 1 1.9253 -2.6924 0.3860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389139576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:47 Heat of formation + Delta-G solvation = -141.446898 kcal Electronic energy + Delta-G solvation = -19098.412014 eV Core-core repulsion = 16029.808550 eV Total energy + Delta-G solvation = -3068.603464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.69173 -36.41136 -35.52758 -34.40813 -33.19604 -33.00938 -30.73885 -28.47099 -26.41885 -25.07472 -24.34446 -21.54818 -19.39640 -19.15538 -17.49490 -16.81604 -16.34102 -15.95024 -15.47913 -15.03676 -14.75102 -14.40630 -13.91875 -13.59218 -13.48404 -13.05610 -12.80484 -12.60707 -12.56285 -11.92039 -11.59546 -11.40890 -11.25696 -11.01283 -10.90254 -10.79860 -10.59533 -10.49861 -10.37104 -10.24797 -9.79236 -9.35289 -9.23155 -9.20773 -8.62458 -6.80214 -5.33978 2.09391 3.07649 3.17928 3.27450 3.84723 3.95596 4.28480 4.60361 4.73913 4.81786 4.85744 4.91592 5.14433 5.27788 5.33963 5.41095 5.53470 5.55627 5.58361 5.70103 5.82909 5.86463 5.96505 6.07814 6.11995 6.13968 6.24036 6.35810 6.63529 6.71429 7.18429 7.47703 7.73189 8.20713 8.70999 10.32067 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.006172 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.373579 B = 4535.814621 C = 4772.792669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.164 3.836 3 H 0.095 0.905 4 N -1.121 6.121 5 S 2.675 3.325 6 O -1.010 7.010 7 O -1.010 7.010 8 C -1.016 5.016 9 H 0.121 0.879 10 C 0.153 3.847 11 N -0.824 5.824 12 Si 0.802 3.198 13 H -0.246 1.246 14 H -0.256 1.256 15 H -0.220 1.220 16 C -0.129 4.129 17 H 0.089 0.911 18 C -0.120 4.120 19 C -0.156 4.156 20 C 0.060 3.940 21 O -0.384 6.384 22 C 0.063 3.937 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.403 0.597 27 H 0.280 0.720 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 -6.165 11.341 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.056 3.944 3 H 0.113 0.887 4 N -0.876 5.876 5 S 2.777 3.223 6 O -1.001 7.001 7 O -1.000 7.000 8 C -1.150 5.150 9 H 0.139 0.861 10 C -0.066 4.066 11 N -0.453 5.453 12 Si 0.622 3.378 13 H -0.170 1.170 14 H -0.180 1.180 15 H -0.142 1.142 16 C -0.149 4.149 17 H 0.108 0.892 18 C -0.158 4.158 19 C -0.193 4.193 20 C -0.017 4.017 21 O -0.302 6.302 22 C -0.014 4.014 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.235 0.765 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.205 -6.060 10.468 14.616 hybrid contribution 0.350 0.343 -0.256 0.553 sum -7.855 -5.718 10.212 14.095 Atomic orbital electron populations 1.22478 0.96006 1.02037 1.03051 1.20545 0.93647 0.96664 0.83579 0.88701 1.55660 1.83535 1.18377 1.29991 1.01359 0.75729 0.74013 0.71232 1.93474 1.82835 1.64628 1.59119 1.93403 1.56647 1.66005 1.83941 1.30477 1.35249 1.39748 1.09564 0.86106 1.24429 0.92361 0.91453 0.98399 1.69988 1.19148 1.20347 1.35797 0.87855 0.81673 0.83920 0.84333 1.17020 1.17959 1.14227 1.22079 1.02395 0.95722 0.94739 0.89240 1.21711 1.01250 0.99559 0.93312 1.22189 1.02299 0.96320 0.98525 1.22559 0.97797 0.93564 0.87783 1.87925 1.74463 1.53970 1.13890 1.22732 0.98770 0.92553 0.87333 0.90716 0.92549 0.91847 0.76504 0.90930 0.90837 0.91171 0.90946 0.91024 0.89271 0.93430 0.92596 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 8.82 37.16 0.33 -2.16 16 2 C 0.16 2.62 2.61 -67.93 -0.18 2.45 16 3 H 0.09 1.66 7.85 -51.93 -0.41 1.26 16 4 N -1.12 -20.73 5.44 -4.89 -0.03 -20.75 16 5 S 2.68 65.63 4.15 -107.50 -0.45 65.18 16 6 O -1.01 -27.03 16.02 -57.17 -0.92 -27.94 16 7 O -1.01 -26.25 16.10 -57.17 -0.92 -27.17 16 8 C -1.02 -28.03 10.12 30.60 0.31 -27.72 16 9 H 0.12 3.35 8.06 -52.49 -0.42 2.93 16 10 C 0.15 4.38 5.47 -17.82 -0.10 4.29 16 11 N -0.82 -23.74 13.96 55.43 0.77 -22.97 16 12 Si 0.80 20.61 26.54 -169.99 -4.51 16.10 16 13 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.22 -5.77 5.60 56.52 0.32 -5.46 16 16 C -0.13 -1.74 2.40 -90.47 -0.22 -1.96 16 17 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.12 -1.35 5.04 -26.55 -0.13 -1.48 16 19 C -0.16 -1.53 6.14 -26.59 -0.16 -1.69 16 20 C 0.06 0.60 6.84 37.21 0.25 0.86 16 21 O -0.38 -5.03 10.76 -35.23 -0.38 -5.40 16 22 C 0.06 0.79 5.61 37.21 0.21 1.00 16 23 H 0.07 1.21 7.64 -51.93 -0.40 0.82 16 24 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16 25 H 0.06 0.73 6.36 -51.93 -0.33 0.40 16 26 H 0.40 6.43 7.09 -34.48 -0.24 6.18 16 27 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.70 6.28 -51.93 -0.33 0.38 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.63 6.30 -51.93 -0.33 0.31 16 35 H 0.09 1.17 6.62 -51.93 -0.34 0.83 16 LS Contribution 285.55 15.07 4.30 4.30 Total: -1.00 -32.65 285.55 -6.70 -39.35 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.89 Total: 5.74 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 0.31 Total: -26.42 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.75 Total: -43.72 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -2.22 Total: -60.52 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.51 Total: 16.10 kcal Atomic # 16 Polarization: 65.63 SS G_CDS: -0.45 Total: 65.18 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.65 -6.70 -39.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389139576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.099 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds