Wall clock time and date at job start Mon Mar 30 2020 04:59:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47124 * 2 1
4 4 N 1.46497 * 109.47566 * 239.99126 * 2 1 3
5 5 S 1.65608 * 119.99652 * 95.00133 * 4 2 1
6 6 O 1.42104 * 106.39724 * 178.54027 * 5 4 2
7 7 O 1.42097 * 106.40199 * 311.45938 * 5 4 2
8 8 C 1.76195 * 107.21632 * 65.00196 * 5 4 2
9 9 H 1.08001 * 120.00866 * 359.97438 * 8 5 4
10 10 C 1.37878 * 119.99874 * 179.97438 * 8 5 4
11 11 N 1.31516 * 120.00340 * 180.02562 * 10 8 5
12 12 Si 1.86802 * 120.00151 * 359.97438 * 10 8 5
13 13 H 1.48503 * 109.46898 * 89.99759 * 12 10 8
14 14 H 1.48497 * 109.47266 * 210.00322 * 12 10 8
15 15 H 1.48500 * 109.47080 * 330.00395 * 12 10 8
16 16 C 1.53005 * 109.46974 * 119.99026 * 2 1 3
17 17 H 1.08997 * 109.52514 * 180.02562 * 16 2 1
18 18 C 1.53181 * 109.52321 * 300.13399 * 16 2 1
19 19 C 1.53171 * 109.03581 * 176.88587 * 18 16 2
20 20 C 1.53097 * 109.16435 * 303.01657 * 19 18 16
21 21 O 1.42898 * 109.41502 * 57.60564 * 20 19 18
22 22 C 1.42914 * 114.15673 * 298.87931 * 21 20 19
23 23 H 1.09002 * 109.46924 * 60.01154 * 1 2 3
24 24 H 1.09002 * 109.47124 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47495 * 300.00699 * 1 2 3
26 26 H 0.96997 * 120.00126 * 275.00057 * 4 2 1
27 27 H 0.96998 * 120.00705 * 180.02562 * 11 10 8
28 28 H 1.08999 * 109.53869 * 296.74594 * 18 16 2
29 29 H 1.09001 * 109.54570 * 56.92677 * 18 16 2
30 30 H 1.09003 * 109.52516 * 62.91561 * 19 18 16
31 31 H 1.08998 * 109.52663 * 183.11313 * 19 18 16
32 32 H 1.09000 * 109.48279 * 177.59460 * 20 19 18
33 33 H 1.09003 * 109.47757 * 297.63042 * 20 19 18
34 34 H 1.08997 * 109.42867 * 301.10608 * 22 21 20
35 35 H 1.09003 * 109.53771 * 181.07275 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6908 -1.1960
5 16 2.4123 0.1770 -2.5504
6 8 2.8779 -0.7639 -3.5083
7 8 1.3248 1.0590 -2.7923
8 6 3.7928 1.1908 -2.1371
9 1 4.2099 1.1556 -1.1415
10 6 4.3407 2.0291 -3.0847
11 7 5.3715 2.7855 -2.7764
12 14 3.6199 2.0896 -4.8070
13 1 2.5585 3.1267 -4.8632
14 1 4.6906 2.4237 -5.7802
15 1 3.0375 0.7665 -5.1466
16 6 2.0399 -0.7211 1.2494
17 1 3.1299 -0.7212 1.2506
18 6 1.5272 -0.0016 2.5008
19 6 1.9788 -0.7762 3.7427
20 6 1.4677 -2.2164 3.6501
21 8 1.9557 -2.8173 2.4490
22 6 1.5276 -2.1638 1.2523
23 1 -0.3633 0.5137 -0.8901
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5139 0.8899
26 1 2.1111 -1.6563 -1.1946
27 1 5.7568 3.3756 -3.4429
28 1 1.9348 1.0088 2.5331
29 1 0.4385 0.0450 2.4743
30 1 3.0676 -0.7789 3.7945
31 1 1.5718 -0.3021 4.6357
32 1 1.8220 -2.7839 4.5106
33 1 0.3777 -2.2152 3.6390
34 1 0.4385 -2.1629 1.2093
35 1 1.9253 -2.6924 0.3860
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000389139576.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:59:46
Heat of formation + Delta-G solvation = -167.651828 kcal
Electronic energy + Delta-G solvation = -19099.548345 eV
Core-core repulsion = 16029.808550 eV
Total energy + Delta-G solvation = -3069.739795 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.68238 -37.82456 -37.36966 -36.47145 -35.19587 -34.18439 -31.89655 -29.62086
-28.57400 -25.97729 -25.40200 -22.57672 -21.15417 -20.40829 -19.43626 -18.69484
-17.61035 -17.21207 -16.78781 -16.65205 -15.81137 -15.65737 -15.52321 -15.32681
-15.01718 -14.62612 -14.27262 -13.87119 -13.51296 -13.43252 -13.22266 -12.96884
-12.83243 -12.66568 -12.55380 -12.24032 -12.13340 -11.89070 -11.71118 -11.43584
-11.33900 -11.19793 -11.10095 -10.31456 -10.25744 -8.96912 -7.52607 0.16746
1.04662 1.13923 1.21357 1.88662 2.41557 2.56320 2.97353 3.31723
3.75865 3.81385 3.87111 4.07784 4.17383 4.21269 4.33892 4.38889
4.53887 4.56596 4.57995 4.81707 4.83107 4.97854 4.99102 5.05682
5.13121 5.19373 5.34152 5.36866 5.42603 5.55186 6.00531 6.29087
6.32197 6.53664 8.20731
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.034586 B = 0.006172 C = 0.005865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 809.373579 B = 4535.814621 C = 4772.792669
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.154 3.846
3 H 0.073 0.927
4 N -1.107 6.107
5 S 2.699 3.301
6 O -1.033 7.033
7 O -1.024 7.024
8 C -1.038 5.038
9 H 0.105 0.895
10 C 0.108 3.892
11 N -0.854 5.854
12 Si 0.826 3.174
13 H -0.237 1.237
14 H -0.222 1.222
15 H -0.230 1.230
16 C -0.124 4.124
17 H 0.066 0.934
18 C -0.121 4.121
19 C -0.152 4.152
20 C 0.053 3.947
21 O -0.404 6.404
22 C 0.063 3.937
23 H 0.050 0.950
24 H 0.078 0.922
25 H 0.092 0.908
26 H 0.417 0.583
27 H 0.291 0.709
28 H 0.068 0.932
29 H 0.089 0.911
30 H 0.058 0.942
31 H 0.096 0.904
32 H 0.105 0.895
33 H 0.065 0.935
34 H 0.075 0.925
35 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.530 -6.811 12.270 16.964
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C 0.047 3.953
3 H 0.091 0.909
4 N -0.867 5.867
5 S 2.798 3.202
6 O -1.023 7.023
7 O -1.014 7.014
8 C -1.170 5.170
9 H 0.123 0.877
10 C -0.109 4.109
11 N -0.485 5.485
12 Si 0.643 3.357
13 H -0.160 1.160
14 H -0.144 1.144
15 H -0.152 1.152
16 C -0.144 4.144
17 H 0.085 0.915
18 C -0.159 4.159
19 C -0.190 4.190
20 C -0.023 4.023
21 O -0.323 6.323
22 C -0.014 4.014
23 H 0.069 0.931
24 H 0.097 0.903
25 H 0.111 0.889
26 H 0.252 0.748
27 H 0.101 0.899
28 H 0.087 0.913
29 H 0.108 0.892
30 H 0.077 0.923
31 H 0.115 0.885
32 H 0.123 0.877
33 H 0.084 0.916
34 H 0.093 0.907
35 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -9.729 -6.692 11.400 16.413
hybrid contribution 0.835 0.514 -0.407 1.062
sum -8.894 -6.178 10.993 15.431
Atomic orbital electron populations
1.22460 0.93839 1.03605 1.03358 1.20813 0.95374 0.95697 0.83418
0.90890 1.55199 1.83109 1.18895 1.29512 1.00493 0.74481 0.73381
0.71837 1.93434 1.83184 1.64775 1.60912 1.93379 1.56293 1.66965
1.84741 1.31007 1.36591 1.40460 1.08962 0.87725 1.25176 0.92869
0.91515 1.01338 1.70014 1.20023 1.21146 1.37294 0.87479 0.82555
0.83697 0.81995 1.16041 1.14373 1.15218 1.22002 1.01082 0.96782
0.94544 0.91516 1.21756 1.02346 0.99161 0.92625 1.22178 1.01603
0.96422 0.98751 1.22806 0.98930 0.93534 0.87078 1.87904 1.75118
1.54511 1.14763 1.22731 0.99771 0.91408 0.87471 0.93059 0.90345
0.88925 0.74776 0.89881 0.91348 0.89226 0.92308 0.88528 0.87717
0.91650 0.90659 0.89264
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.50 8.82 71.98 0.63 -3.86 16
2 C 0.15 4.83 2.61 44.99 0.12 4.94 16
3 H 0.07 2.60 7.85 -2.39 -0.02 2.58 16
4 N -1.11 -40.53 5.44 -169.39 -0.92 -41.45 16
5 S 2.70 132.69 4.15 -56.49 -0.23 132.46 16
6 O -1.03 -55.12 16.02 -128.00 -2.05 -57.17 16
7 O -1.02 -53.02 16.10 -128.00 -2.06 -55.09 16
8 C -1.04 -58.47 10.12 67.73 0.69 -57.78 16
9 H 0.10 6.04 8.06 -2.91 -0.02 6.02 16
10 C 0.11 6.22 5.47 84.65 0.46 6.68 16
11 N -0.85 -49.79 13.96 21.45 0.30 -49.49 16
12 Si 0.83 41.35 26.54 68.60 1.82 43.17 16
13 H -0.24 -11.44 7.11 99.48 0.71 -10.74 16
14 H -0.22 -9.82 7.11 99.48 0.71 -9.11 16
15 H -0.23 -11.84 5.60 99.48 0.56 -11.28 16
16 C -0.12 -3.21 2.40 -10.70 -0.03 -3.24 16
17 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
18 C -0.12 -2.45 5.04 30.71 0.15 -2.29 16
19 C -0.15 -2.61 6.14 30.68 0.19 -2.43 16
20 C 0.05 0.90 6.84 72.01 0.49 1.39 16
21 O -0.40 -9.74 10.76 -148.98 -1.60 -11.34 16
22 C 0.06 1.45 5.61 72.01 0.40 1.86 16
23 H 0.05 1.59 7.64 -2.39 -0.02 1.57 16
24 H 0.08 1.67 6.38 -2.39 -0.02 1.66 16
25 H 0.09 1.84 6.36 -2.39 -0.02 1.83 16
26 H 0.42 12.97 7.09 -96.74 -0.69 12.29 16
27 H 0.29 15.26 8.31 -92.71 -0.77 14.49 16
28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
29 H 0.09 1.47 6.28 -2.39 -0.01 1.45 16
30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16
33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
34 H 0.08 1.44 6.30 -2.39 -0.02 1.43 16
35 H 0.09 2.09 6.62 -2.39 -0.02 2.08 16
Total: -1.00 -69.92 285.55 -1.37 -71.29
By element:
Atomic # 1 Polarization: 22.09 SS G_CDS: 0.26 Total: 22.35 kcal
Atomic # 6 Polarization: -57.84 SS G_CDS: 3.11 Total: -54.72 kcal
Atomic # 7 Polarization: -90.32 SS G_CDS: -0.62 Total: -90.95 kcal
Atomic # 8 Polarization: -117.88 SS G_CDS: -5.71 Total: -123.60 kcal
Atomic # 14 Polarization: 41.35 SS G_CDS: 1.82 Total: 43.17 kcal
Atomic # 16 Polarization: 132.69 SS G_CDS: -0.23 Total: 132.46 kcal
Total: -69.92 -1.37 -71.29 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389139576.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.363 kcal
(2) G-P(sol) polarization free energy of solvation -69.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.279 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds