Wall clock time and date at job start Mon Mar 30 2020 04:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47124 * 2 1 4 4 N 1.46497 * 109.47566 * 239.99126 * 2 1 3 5 5 S 1.65608 * 119.99652 * 95.00133 * 4 2 1 6 6 O 1.42104 * 106.39724 * 178.54027 * 5 4 2 7 7 O 1.42097 * 106.40199 * 311.45938 * 5 4 2 8 8 C 1.76195 * 107.21632 * 65.00196 * 5 4 2 9 9 H 1.08001 * 120.00866 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99874 * 179.97438 * 8 5 4 11 11 N 1.31516 * 120.00340 * 180.02562 * 10 8 5 12 12 Si 1.86802 * 120.00151 * 359.97438 * 10 8 5 13 13 H 1.48503 * 109.46898 * 89.99759 * 12 10 8 14 14 H 1.48497 * 109.47266 * 210.00322 * 12 10 8 15 15 H 1.48500 * 109.47080 * 330.00395 * 12 10 8 16 16 C 1.53005 * 109.46974 * 119.99026 * 2 1 3 17 17 H 1.08997 * 109.52514 * 180.02562 * 16 2 1 18 18 C 1.53181 * 109.52321 * 300.13399 * 16 2 1 19 19 C 1.53171 * 109.03581 * 176.88587 * 18 16 2 20 20 C 1.53097 * 109.16435 * 303.01657 * 19 18 16 21 21 O 1.42898 * 109.41502 * 57.60564 * 20 19 18 22 22 C 1.42914 * 114.15673 * 298.87931 * 21 20 19 23 23 H 1.09002 * 109.46924 * 60.01154 * 1 2 3 24 24 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47495 * 300.00699 * 1 2 3 26 26 H 0.96997 * 120.00126 * 275.00057 * 4 2 1 27 27 H 0.96998 * 120.00705 * 180.02562 * 11 10 8 28 28 H 1.08999 * 109.53869 * 296.74594 * 18 16 2 29 29 H 1.09001 * 109.54570 * 56.92677 * 18 16 2 30 30 H 1.09003 * 109.52516 * 62.91561 * 19 18 16 31 31 H 1.08998 * 109.52663 * 183.11313 * 19 18 16 32 32 H 1.09000 * 109.48279 * 177.59460 * 20 19 18 33 33 H 1.09003 * 109.47757 * 297.63042 * 20 19 18 34 34 H 1.08997 * 109.42867 * 301.10608 * 22 21 20 35 35 H 1.09003 * 109.53771 * 181.07275 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 16 2.4123 0.1770 -2.5504 6 8 2.8779 -0.7639 -3.5083 7 8 1.3248 1.0590 -2.7923 8 6 3.7928 1.1908 -2.1371 9 1 4.2099 1.1556 -1.1415 10 6 4.3407 2.0291 -3.0847 11 7 5.3715 2.7855 -2.7764 12 14 3.6199 2.0896 -4.8070 13 1 2.5585 3.1267 -4.8632 14 1 4.6906 2.4237 -5.7802 15 1 3.0375 0.7665 -5.1466 16 6 2.0399 -0.7211 1.2494 17 1 3.1299 -0.7212 1.2506 18 6 1.5272 -0.0016 2.5008 19 6 1.9788 -0.7762 3.7427 20 6 1.4677 -2.2164 3.6501 21 8 1.9557 -2.8173 2.4490 22 6 1.5276 -2.1638 1.2523 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.1111 -1.6563 -1.1946 27 1 5.7568 3.3756 -3.4429 28 1 1.9348 1.0088 2.5331 29 1 0.4385 0.0450 2.4743 30 1 3.0676 -0.7789 3.7945 31 1 1.5718 -0.3021 4.6357 32 1 1.8220 -2.7839 4.5106 33 1 0.3777 -2.2152 3.6390 34 1 0.4385 -2.1629 1.2093 35 1 1.9253 -2.6924 0.3860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389139576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:46 Heat of formation + Delta-G solvation = -167.651828 kcal Electronic energy + Delta-G solvation = -19099.548345 eV Core-core repulsion = 16029.808550 eV Total energy + Delta-G solvation = -3069.739795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68238 -37.82456 -37.36966 -36.47145 -35.19587 -34.18439 -31.89655 -29.62086 -28.57400 -25.97729 -25.40200 -22.57672 -21.15417 -20.40829 -19.43626 -18.69484 -17.61035 -17.21207 -16.78781 -16.65205 -15.81137 -15.65737 -15.52321 -15.32681 -15.01718 -14.62612 -14.27262 -13.87119 -13.51296 -13.43252 -13.22266 -12.96884 -12.83243 -12.66568 -12.55380 -12.24032 -12.13340 -11.89070 -11.71118 -11.43584 -11.33900 -11.19793 -11.10095 -10.31456 -10.25744 -8.96912 -7.52607 0.16746 1.04662 1.13923 1.21357 1.88662 2.41557 2.56320 2.97353 3.31723 3.75865 3.81385 3.87111 4.07784 4.17383 4.21269 4.33892 4.38889 4.53887 4.56596 4.57995 4.81707 4.83107 4.97854 4.99102 5.05682 5.13121 5.19373 5.34152 5.36866 5.42603 5.55186 6.00531 6.29087 6.32197 6.53664 8.20731 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.006172 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.373579 B = 4535.814621 C = 4772.792669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.154 3.846 3 H 0.073 0.927 4 N -1.107 6.107 5 S 2.699 3.301 6 O -1.033 7.033 7 O -1.024 7.024 8 C -1.038 5.038 9 H 0.105 0.895 10 C 0.108 3.892 11 N -0.854 5.854 12 Si 0.826 3.174 13 H -0.237 1.237 14 H -0.222 1.222 15 H -0.230 1.230 16 C -0.124 4.124 17 H 0.066 0.934 18 C -0.121 4.121 19 C -0.152 4.152 20 C 0.053 3.947 21 O -0.404 6.404 22 C 0.063 3.937 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.417 0.583 27 H 0.291 0.709 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 -6.811 12.270 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.047 3.953 3 H 0.091 0.909 4 N -0.867 5.867 5 S 2.798 3.202 6 O -1.023 7.023 7 O -1.014 7.014 8 C -1.170 5.170 9 H 0.123 0.877 10 C -0.109 4.109 11 N -0.485 5.485 12 Si 0.643 3.357 13 H -0.160 1.160 14 H -0.144 1.144 15 H -0.152 1.152 16 C -0.144 4.144 17 H 0.085 0.915 18 C -0.159 4.159 19 C -0.190 4.190 20 C -0.023 4.023 21 O -0.323 6.323 22 C -0.014 4.014 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.252 0.748 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.729 -6.692 11.400 16.413 hybrid contribution 0.835 0.514 -0.407 1.062 sum -8.894 -6.178 10.993 15.431 Atomic orbital electron populations 1.22460 0.93839 1.03605 1.03358 1.20813 0.95374 0.95697 0.83418 0.90890 1.55199 1.83109 1.18895 1.29512 1.00493 0.74481 0.73381 0.71837 1.93434 1.83184 1.64775 1.60912 1.93379 1.56293 1.66965 1.84741 1.31007 1.36591 1.40460 1.08962 0.87725 1.25176 0.92869 0.91515 1.01338 1.70014 1.20023 1.21146 1.37294 0.87479 0.82555 0.83697 0.81995 1.16041 1.14373 1.15218 1.22002 1.01082 0.96782 0.94544 0.91516 1.21756 1.02346 0.99161 0.92625 1.22178 1.01603 0.96422 0.98751 1.22806 0.98930 0.93534 0.87078 1.87904 1.75118 1.54511 1.14763 1.22731 0.99771 0.91408 0.87471 0.93059 0.90345 0.88925 0.74776 0.89881 0.91348 0.89226 0.92308 0.88528 0.87717 0.91650 0.90659 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 8.82 71.98 0.63 -3.86 16 2 C 0.15 4.83 2.61 44.99 0.12 4.94 16 3 H 0.07 2.60 7.85 -2.39 -0.02 2.58 16 4 N -1.11 -40.53 5.44 -169.39 -0.92 -41.45 16 5 S 2.70 132.69 4.15 -56.49 -0.23 132.46 16 6 O -1.03 -55.12 16.02 -128.00 -2.05 -57.17 16 7 O -1.02 -53.02 16.10 -128.00 -2.06 -55.09 16 8 C -1.04 -58.47 10.12 67.73 0.69 -57.78 16 9 H 0.10 6.04 8.06 -2.91 -0.02 6.02 16 10 C 0.11 6.22 5.47 84.65 0.46 6.68 16 11 N -0.85 -49.79 13.96 21.45 0.30 -49.49 16 12 Si 0.83 41.35 26.54 68.60 1.82 43.17 16 13 H -0.24 -11.44 7.11 99.48 0.71 -10.74 16 14 H -0.22 -9.82 7.11 99.48 0.71 -9.11 16 15 H -0.23 -11.84 5.60 99.48 0.56 -11.28 16 16 C -0.12 -3.21 2.40 -10.70 -0.03 -3.24 16 17 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 18 C -0.12 -2.45 5.04 30.71 0.15 -2.29 16 19 C -0.15 -2.61 6.14 30.68 0.19 -2.43 16 20 C 0.05 0.90 6.84 72.01 0.49 1.39 16 21 O -0.40 -9.74 10.76 -148.98 -1.60 -11.34 16 22 C 0.06 1.45 5.61 72.01 0.40 1.86 16 23 H 0.05 1.59 7.64 -2.39 -0.02 1.57 16 24 H 0.08 1.67 6.38 -2.39 -0.02 1.66 16 25 H 0.09 1.84 6.36 -2.39 -0.02 1.83 16 26 H 0.42 12.97 7.09 -96.74 -0.69 12.29 16 27 H 0.29 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.47 6.28 -2.39 -0.01 1.45 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.44 6.30 -2.39 -0.02 1.43 16 35 H 0.09 2.09 6.62 -2.39 -0.02 2.08 16 Total: -1.00 -69.92 285.55 -1.37 -71.29 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.26 Total: 22.35 kcal Atomic # 6 Polarization: -57.84 SS G_CDS: 3.11 Total: -54.72 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -0.62 Total: -90.95 kcal Atomic # 8 Polarization: -117.88 SS G_CDS: -5.71 Total: -123.60 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.82 Total: 43.17 kcal Atomic # 16 Polarization: 132.69 SS G_CDS: -0.23 Total: 132.46 kcal Total: -69.92 -1.37 -71.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389139576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.363 kcal (2) G-P(sol) polarization free energy of solvation -69.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds