Wall clock time and date at job start Mon Mar 30 2020 04:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47065 * 2 1 4 4 N 1.46499 * 109.46635 * 119.99314 * 2 1 3 5 5 S 1.65610 * 119.99956 * 264.99805 * 4 2 1 6 6 O 1.42098 * 106.39808 * 178.54540 * 5 4 2 7 7 O 1.42100 * 106.40214 * 311.46508 * 5 4 2 8 8 C 1.76195 * 107.21542 * 65.00423 * 5 4 2 9 9 H 1.08001 * 120.00493 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99846 * 179.97438 * 8 5 4 11 11 N 1.31512 * 119.99934 * 0.02562 * 10 8 5 12 12 Si 1.86797 * 119.99992 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.47190 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46863 * 120.00252 * 12 10 8 15 15 H 1.48497 * 109.47109 * 240.00439 * 12 10 8 16 16 C 1.52991 * 109.47227 * 239.99162 * 2 1 3 17 17 H 1.08999 * 109.48875 * 185.02672 * 16 2 1 18 18 C 1.53098 * 109.47826 * 65.00265 * 16 2 1 19 19 C 1.53177 * 109.21356 * 182.37378 * 18 16 2 20 20 C 1.53311 * 108.96735 * 56.95427 * 19 18 16 21 21 C 1.53100 * 109.19441 * 303.05955 * 20 19 18 22 22 O 1.42899 * 109.48189 * 305.06139 * 16 2 1 23 23 H 1.09000 * 109.47231 * 300.00824 * 1 2 3 24 24 H 1.09005 * 109.47021 * 60.00417 * 1 2 3 25 25 H 1.08995 * 109.47207 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00482 * 85.00692 * 4 2 1 27 27 H 0.97000 * 120.00136 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.52244 * 302.31317 * 18 16 2 29 29 H 1.09004 * 109.52508 * 62.43846 * 18 16 2 30 30 H 1.09001 * 109.54414 * 176.87772 * 19 18 16 31 31 H 1.09002 * 109.54680 * 297.14715 * 19 18 16 32 32 H 1.08992 * 109.51110 * 183.14032 * 20 19 18 33 33 H 1.09005 * 109.50614 * 62.96974 * 20 19 18 34 34 H 1.09002 * 109.47233 * 297.62202 * 21 20 19 35 35 H 1.09002 * 109.48291 * 177.59299 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 16 2.4121 0.1775 2.5506 6 8 2.8123 -0.7694 3.5316 7 8 3.2435 1.2446 2.1155 8 6 0.9274 0.9151 3.1473 9 1 -0.0049 0.7490 2.6279 10 6 0.9554 1.7036 4.2781 11 7 2.0905 1.9055 4.9109 12 14 -0.6184 2.4862 4.9103 13 1 -1.7497 2.1072 4.0260 14 1 -0.8885 2.0094 6.2906 15 1 -0.4685 3.9635 4.9174 16 6 2.0400 -0.7214 -1.2491 17 1 3.1263 -0.8002 -1.2054 18 6 1.6351 0.0690 -2.4961 19 6 2.0968 -0.6884 -3.7449 20 6 1.4914 -2.0968 -3.7258 21 6 1.9017 -2.8035 -2.4311 22 8 1.4693 -2.0300 -1.3100 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 2.1110 -1.6560 1.1952 27 1 2.1103 2.4605 5.7062 28 1 0.5514 0.1831 -2.5192 29 1 2.1045 1.0525 -2.4724 30 1 1.7630 -0.1585 -4.6370 31 1 3.1845 -0.7594 -3.7471 32 1 1.8587 -2.6626 -4.5818 33 1 0.4047 -2.0265 -3.7736 34 1 2.9862 -2.9096 -2.4031 35 1 1.4388 -3.7896 -2.3928 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393581334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:09 Heat of formation + Delta-G solvation = -156.867420 kcal Electronic energy + Delta-G solvation = -19029.379034 eV Core-core repulsion = 15960.106886 eV Total energy + Delta-G solvation = -3069.272148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.53637 -35.59311 -34.99904 -33.88234 -33.60882 -33.04947 -30.92278 -28.40385 -26.10506 -25.14912 -23.76624 -21.11961 -19.90605 -18.92451 -17.40314 -16.51264 -16.03971 -15.82598 -15.27871 -14.85870 -14.52885 -14.39790 -13.97512 -13.59314 -13.11729 -12.78290 -12.65146 -12.47538 -12.00896 -11.86407 -11.37376 -11.21079 -11.19680 -11.04945 -10.80904 -10.57664 -10.45666 -10.39549 -10.23042 -10.11977 -9.98737 -9.33542 -9.21252 -8.89901 -8.43588 -6.65316 -5.26022 2.42621 3.08513 3.16997 3.24160 3.85141 4.10433 4.65084 4.70897 4.71126 4.81902 4.82367 5.10059 5.21526 5.27274 5.44919 5.53363 5.66166 5.69918 5.76063 5.83834 5.88369 5.96433 6.02137 6.03164 6.14836 6.28246 6.40636 6.63727 6.82273 6.98470 7.36114 7.40389 8.02935 8.09557 8.94731 10.28876 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.034068 B = 0.005913 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.678877 B = 4734.458958 C = 5056.526301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.166 3.834 3 H 0.100 0.900 4 N -1.129 6.129 5 S 2.714 3.286 6 O -1.009 7.009 7 O -1.010 7.010 8 C -1.019 5.019 9 H 0.107 0.893 10 C 0.132 3.868 11 N -0.846 5.846 12 Si 0.919 3.081 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.272 1.272 16 C 0.086 3.914 17 H 0.063 0.937 18 C -0.154 4.154 19 C -0.121 4.121 20 C -0.156 4.156 21 C 0.059 3.941 22 O -0.370 6.370 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.405 0.595 27 H 0.289 0.711 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -4.870 -15.409 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.058 3.942 3 H 0.118 0.882 4 N -0.883 5.883 5 S 2.814 3.186 6 O -0.999 6.999 7 O -1.000 7.000 8 C -1.152 5.152 9 H 0.125 0.875 10 C -0.085 4.085 11 N -0.476 5.476 12 Si 0.743 3.257 13 H -0.186 1.186 14 H -0.197 1.197 15 H -0.197 1.197 16 C 0.027 3.973 17 H 0.081 0.919 18 C -0.192 4.192 19 C -0.159 4.159 20 C -0.193 4.193 21 C -0.018 4.018 22 O -0.289 6.289 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.237 0.763 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.190 -4.589 -14.766 15.617 hybrid contribution -1.212 0.185 0.059 1.227 sum -3.401 -4.404 -14.706 15.724 Atomic orbital electron populations 1.22392 0.95533 1.02906 1.02341 1.20585 0.94538 0.95836 0.83257 0.88168 1.55961 1.84540 1.19110 1.28654 1.00405 0.75623 0.72386 0.70224 1.93369 1.84278 1.64213 1.58043 1.93350 1.68908 1.55895 1.81867 1.30711 1.16609 1.45591 1.22324 0.87486 1.24751 0.97939 0.92211 0.93608 1.69912 1.26297 1.33557 1.17859 0.86155 0.81593 0.78905 0.79020 1.18607 1.19705 1.19701 1.22450 0.97150 0.83167 0.94542 0.91878 1.22277 1.02848 0.99618 0.94455 1.21605 1.00539 0.95668 0.98095 1.22212 1.01814 0.96845 0.98475 1.22532 0.98847 0.94689 0.85703 1.87960 1.69499 1.25999 1.45421 0.90821 0.92537 0.91660 0.76341 0.90038 0.90347 0.90445 0.91608 0.91920 0.91341 0.91118 0.93460 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.08 37.16 0.34 -2.46 16 2 C 0.17 2.92 2.78 -67.93 -0.19 2.73 16 3 H 0.10 1.84 7.50 -51.93 -0.39 1.45 16 4 N -1.13 -23.18 5.46 -4.89 -0.03 -23.20 16 5 S 2.71 72.65 5.00 -107.50 -0.54 72.11 16 6 O -1.01 -30.15 18.02 -57.17 -1.03 -31.18 16 7 O -1.01 -29.50 17.36 -57.17 -0.99 -30.49 16 8 C -1.02 -27.91 9.57 30.60 0.29 -27.62 16 9 H 0.11 2.67 5.62 -52.49 -0.29 2.37 16 10 C 0.13 3.70 5.46 -17.82 -0.10 3.61 16 11 N -0.85 -25.04 13.19 55.43 0.73 -24.31 16 12 Si 0.92 20.63 29.54 -169.99 -5.02 15.61 16 13 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 C 0.09 1.24 2.53 -26.69 -0.07 1.18 16 17 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.15 -1.78 5.22 -26.59 -0.14 -1.92 16 19 C -0.12 -1.16 6.04 -26.48 -0.16 -1.32 16 20 C -0.16 -1.43 6.14 -26.52 -0.16 -1.59 16 21 C 0.06 0.64 6.84 37.21 0.25 0.89 16 22 O -0.37 -5.24 9.24 -35.23 -0.33 -5.56 16 23 H 0.07 1.32 5.74 -51.93 -0.30 1.02 16 24 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16 25 H 0.06 1.04 7.56 -51.93 -0.39 0.64 16 26 H 0.41 7.62 8.58 -34.47 -0.30 7.32 16 27 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.08 0.89 6.47 -51.93 -0.34 0.55 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -34.66 294.21 -7.56 -42.22 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.86 Total: 6.89 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 0.07 Total: -26.52 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.70 Total: -47.52 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: -2.35 Total: -67.23 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 72.65 SS G_CDS: -0.54 Total: 72.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.66 -7.56 -42.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393581334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.648 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds