Wall clock time and date at job start Mon Mar 30 2020 04:59:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09004 * 109.47065 * 2 1
4 4 N 1.46499 * 109.46635 * 119.99314 * 2 1 3
5 5 S 1.65610 * 119.99956 * 264.99805 * 4 2 1
6 6 O 1.42098 * 106.39808 * 178.54540 * 5 4 2
7 7 O 1.42100 * 106.40214 * 311.46508 * 5 4 2
8 8 C 1.76195 * 107.21542 * 65.00423 * 5 4 2
9 9 H 1.08001 * 120.00493 * 0.02562 * 8 5 4
10 10 C 1.37884 * 119.99846 * 179.97438 * 8 5 4
11 11 N 1.31512 * 119.99934 * 0.02562 * 10 8 5
12 12 Si 1.86797 * 119.99992 * 179.97438 * 10 8 5
13 13 H 1.48504 * 109.47190 * 0.02562 * 12 10 8
14 14 H 1.48504 * 109.46863 * 120.00252 * 12 10 8
15 15 H 1.48497 * 109.47109 * 240.00439 * 12 10 8
16 16 C 1.52991 * 109.47227 * 239.99162 * 2 1 3
17 17 H 1.08999 * 109.48875 * 185.02672 * 16 2 1
18 18 C 1.53098 * 109.47826 * 65.00265 * 16 2 1
19 19 C 1.53177 * 109.21356 * 182.37378 * 18 16 2
20 20 C 1.53311 * 108.96735 * 56.95427 * 19 18 16
21 21 C 1.53100 * 109.19441 * 303.05955 * 20 19 18
22 22 O 1.42899 * 109.48189 * 305.06139 * 16 2 1
23 23 H 1.09000 * 109.47231 * 300.00824 * 1 2 3
24 24 H 1.09005 * 109.47021 * 60.00417 * 1 2 3
25 25 H 1.08995 * 109.47207 * 180.02562 * 1 2 3
26 26 H 0.97000 * 120.00482 * 85.00692 * 4 2 1
27 27 H 0.97000 * 120.00136 * 179.97438 * 11 10 8
28 28 H 1.09002 * 109.52244 * 302.31317 * 18 16 2
29 29 H 1.09004 * 109.52508 * 62.43846 * 18 16 2
30 30 H 1.09001 * 109.54414 * 176.87772 * 19 18 16
31 31 H 1.09002 * 109.54680 * 297.14715 * 19 18 16
32 32 H 1.08992 * 109.51110 * 183.14032 * 20 19 18
33 33 H 1.09005 * 109.50614 * 62.96974 * 20 19 18
34 34 H 1.09002 * 109.47233 * 297.62202 * 21 20 19
35 35 H 1.09002 * 109.48291 * 177.59299 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0182 -0.6905 1.1963
5 16 2.4121 0.1775 2.5506
6 8 2.8123 -0.7694 3.5316
7 8 3.2435 1.2446 2.1155
8 6 0.9274 0.9151 3.1473
9 1 -0.0049 0.7490 2.6279
10 6 0.9554 1.7036 4.2781
11 7 2.0905 1.9055 4.9109
12 14 -0.6184 2.4862 4.9103
13 1 -1.7497 2.1072 4.0260
14 1 -0.8885 2.0094 6.2906
15 1 -0.4685 3.9635 4.9174
16 6 2.0400 -0.7214 -1.2491
17 1 3.1263 -0.8002 -1.2054
18 6 1.6351 0.0690 -2.4961
19 6 2.0968 -0.6884 -3.7449
20 6 1.4914 -2.0968 -3.7258
21 6 1.9017 -2.8035 -2.4311
22 8 1.4693 -2.0300 -1.3100
23 1 -0.3634 0.5140 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0276 0.0005
26 1 2.1110 -1.6560 1.1952
27 1 2.1103 2.4605 5.7062
28 1 0.5514 0.1831 -2.5192
29 1 2.1045 1.0525 -2.4724
30 1 1.7630 -0.1585 -4.6370
31 1 3.1845 -0.7594 -3.7471
32 1 1.8587 -2.6626 -4.5818
33 1 0.4047 -2.0265 -3.7736
34 1 2.9862 -2.9096 -2.4031
35 1 1.4388 -3.7896 -2.3928
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000393581334.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:59:09
Heat of formation + Delta-G solvation = -156.867420 kcal
Electronic energy + Delta-G solvation = -19029.379034 eV
Core-core repulsion = 15960.106886 eV
Total energy + Delta-G solvation = -3069.272148 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.53637 -35.59311 -34.99904 -33.88234 -33.60882 -33.04947 -30.92278 -28.40385
-26.10506 -25.14912 -23.76624 -21.11961 -19.90605 -18.92451 -17.40314 -16.51264
-16.03971 -15.82598 -15.27871 -14.85870 -14.52885 -14.39790 -13.97512 -13.59314
-13.11729 -12.78290 -12.65146 -12.47538 -12.00896 -11.86407 -11.37376 -11.21079
-11.19680 -11.04945 -10.80904 -10.57664 -10.45666 -10.39549 -10.23042 -10.11977
-9.98737 -9.33542 -9.21252 -8.89901 -8.43588 -6.65316 -5.26022 2.42621
3.08513 3.16997 3.24160 3.85141 4.10433 4.65084 4.70897 4.71126
4.81902 4.82367 5.10059 5.21526 5.27274 5.44919 5.53363 5.66166
5.69918 5.76063 5.83834 5.88369 5.96433 6.02137 6.03164 6.14836
6.28246 6.40636 6.63727 6.82273 6.98470 7.36114 7.40389 8.02935
8.09557 8.94731 10.28876
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.034068 B = 0.005913 C = 0.005536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 821.678877 B = 4734.458958 C = 5056.526301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.166 3.834
3 H 0.100 0.900
4 N -1.129 6.129
5 S 2.714 3.286
6 O -1.009 7.009
7 O -1.010 7.010
8 C -1.019 5.019
9 H 0.107 0.893
10 C 0.132 3.868
11 N -0.846 5.846
12 Si 0.919 3.081
13 H -0.262 1.262
14 H -0.272 1.272
15 H -0.272 1.272
16 C 0.086 3.914
17 H 0.063 0.937
18 C -0.154 4.154
19 C -0.121 4.121
20 C -0.156 4.156
21 C 0.059 3.941
22 O -0.370 6.370
23 H 0.073 0.927
24 H 0.056 0.944
25 H 0.064 0.936
26 H 0.405 0.595
27 H 0.289 0.711
28 H 0.078 0.922
29 H 0.077 0.923
30 H 0.065 0.935
31 H 0.062 0.938
32 H 0.068 0.932
33 H 0.070 0.930
34 H 0.047 0.953
35 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.053 -4.870 -15.409 16.446
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.058 3.942
3 H 0.118 0.882
4 N -0.883 5.883
5 S 2.814 3.186
6 O -0.999 6.999
7 O -1.000 7.000
8 C -1.152 5.152
9 H 0.125 0.875
10 C -0.085 4.085
11 N -0.476 5.476
12 Si 0.743 3.257
13 H -0.186 1.186
14 H -0.197 1.197
15 H -0.197 1.197
16 C 0.027 3.973
17 H 0.081 0.919
18 C -0.192 4.192
19 C -0.159 4.159
20 C -0.193 4.193
21 C -0.018 4.018
22 O -0.289 6.289
23 H 0.092 0.908
24 H 0.075 0.925
25 H 0.083 0.917
26 H 0.237 0.763
27 H 0.100 0.900
28 H 0.097 0.903
29 H 0.096 0.904
30 H 0.084 0.916
31 H 0.081 0.919
32 H 0.087 0.913
33 H 0.089 0.911
34 H 0.065 0.935
35 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -2.190 -4.589 -14.766 15.617
hybrid contribution -1.212 0.185 0.059 1.227
sum -3.401 -4.404 -14.706 15.724
Atomic orbital electron populations
1.22392 0.95533 1.02906 1.02341 1.20585 0.94538 0.95836 0.83257
0.88168 1.55961 1.84540 1.19110 1.28654 1.00405 0.75623 0.72386
0.70224 1.93369 1.84278 1.64213 1.58043 1.93350 1.68908 1.55895
1.81867 1.30711 1.16609 1.45591 1.22324 0.87486 1.24751 0.97939
0.92211 0.93608 1.69912 1.26297 1.33557 1.17859 0.86155 0.81593
0.78905 0.79020 1.18607 1.19705 1.19701 1.22450 0.97150 0.83167
0.94542 0.91878 1.22277 1.02848 0.99618 0.94455 1.21605 1.00539
0.95668 0.98095 1.22212 1.01814 0.96845 0.98475 1.22532 0.98847
0.94689 0.85703 1.87960 1.69499 1.25999 1.45421 0.90821 0.92537
0.91660 0.76341 0.90038 0.90347 0.90445 0.91608 0.91920 0.91341
0.91118 0.93460 0.89154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.80 9.08 37.16 0.34 -2.46 16
2 C 0.17 2.92 2.78 -67.93 -0.19 2.73 16
3 H 0.10 1.84 7.50 -51.93 -0.39 1.45 16
4 N -1.13 -23.18 5.46 -4.89 -0.03 -23.20 16
5 S 2.71 72.65 5.00 -107.50 -0.54 72.11 16
6 O -1.01 -30.15 18.02 -57.17 -1.03 -31.18 16
7 O -1.01 -29.50 17.36 -57.17 -0.99 -30.49 16
8 C -1.02 -27.91 9.57 30.60 0.29 -27.62 16
9 H 0.11 2.67 5.62 -52.49 -0.29 2.37 16
10 C 0.13 3.70 5.46 -17.82 -0.10 3.61 16
11 N -0.85 -25.04 13.19 55.43 0.73 -24.31 16
12 Si 0.92 20.63 29.54 -169.99 -5.02 15.61 16
13 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16
14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16
16 C 0.09 1.24 2.53 -26.69 -0.07 1.18 16
17 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
18 C -0.15 -1.78 5.22 -26.59 -0.14 -1.92 16
19 C -0.12 -1.16 6.04 -26.48 -0.16 -1.32 16
20 C -0.16 -1.43 6.14 -26.52 -0.16 -1.59 16
21 C 0.06 0.64 6.84 37.21 0.25 0.89 16
22 O -0.37 -5.24 9.24 -35.23 -0.33 -5.56 16
23 H 0.07 1.32 5.74 -51.93 -0.30 1.02 16
24 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16
25 H 0.06 1.04 7.56 -51.93 -0.39 0.64 16
26 H 0.41 7.62 8.58 -34.47 -0.30 7.32 16
27 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16
28 H 0.08 0.89 6.47 -51.93 -0.34 0.55 16
29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 294.21 15.07 4.43 4.43
Total: -1.00 -34.66 294.21 -7.56 -42.22
By element:
Atomic # 1 Polarization: 11.75 SS G_CDS: -4.86 Total: 6.89 kcal
Atomic # 6 Polarization: -26.59 SS G_CDS: 0.07 Total: -26.52 kcal
Atomic # 7 Polarization: -48.22 SS G_CDS: 0.70 Total: -47.52 kcal
Atomic # 8 Polarization: -64.89 SS G_CDS: -2.35 Total: -67.23 kcal
Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal
Atomic # 16 Polarization: 72.65 SS G_CDS: -0.54 Total: 72.11 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -34.66 -7.56 -42.22 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393581334.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -114.648 kcal
(2) G-P(sol) polarization free energy of solvation -34.659 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.307 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) -156.867 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds