Wall clock time and date at job start Mon Mar 30 2020 04:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47065 * 2 1 4 4 N 1.46499 * 109.46635 * 119.99314 * 2 1 3 5 5 S 1.65610 * 119.99956 * 264.99805 * 4 2 1 6 6 O 1.42098 * 106.39808 * 178.54540 * 5 4 2 7 7 O 1.42100 * 106.40214 * 311.46508 * 5 4 2 8 8 C 1.76195 * 107.21542 * 65.00423 * 5 4 2 9 9 H 1.08001 * 120.00493 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99846 * 179.97438 * 8 5 4 11 11 N 1.31512 * 119.99934 * 0.02562 * 10 8 5 12 12 Si 1.86797 * 119.99992 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.47190 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46863 * 120.00252 * 12 10 8 15 15 H 1.48497 * 109.47109 * 240.00439 * 12 10 8 16 16 C 1.52991 * 109.47227 * 239.99162 * 2 1 3 17 17 H 1.08999 * 109.48875 * 185.02672 * 16 2 1 18 18 C 1.53098 * 109.47826 * 65.00265 * 16 2 1 19 19 C 1.53177 * 109.21356 * 182.37378 * 18 16 2 20 20 C 1.53311 * 108.96735 * 56.95427 * 19 18 16 21 21 C 1.53100 * 109.19441 * 303.05955 * 20 19 18 22 22 O 1.42899 * 109.48189 * 305.06139 * 16 2 1 23 23 H 1.09000 * 109.47231 * 300.00824 * 1 2 3 24 24 H 1.09005 * 109.47021 * 60.00417 * 1 2 3 25 25 H 1.08995 * 109.47207 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00482 * 85.00692 * 4 2 1 27 27 H 0.97000 * 120.00136 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.52244 * 302.31317 * 18 16 2 29 29 H 1.09004 * 109.52508 * 62.43846 * 18 16 2 30 30 H 1.09001 * 109.54414 * 176.87772 * 19 18 16 31 31 H 1.09002 * 109.54680 * 297.14715 * 19 18 16 32 32 H 1.08992 * 109.51110 * 183.14032 * 20 19 18 33 33 H 1.09005 * 109.50614 * 62.96974 * 20 19 18 34 34 H 1.09002 * 109.47233 * 297.62202 * 21 20 19 35 35 H 1.09002 * 109.48291 * 177.59299 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 16 2.4121 0.1775 2.5506 6 8 2.8123 -0.7694 3.5316 7 8 3.2435 1.2446 2.1155 8 6 0.9274 0.9151 3.1473 9 1 -0.0049 0.7490 2.6279 10 6 0.9554 1.7036 4.2781 11 7 2.0905 1.9055 4.9109 12 14 -0.6184 2.4862 4.9103 13 1 -1.7497 2.1072 4.0260 14 1 -0.8885 2.0094 6.2906 15 1 -0.4685 3.9635 4.9174 16 6 2.0400 -0.7214 -1.2491 17 1 3.1263 -0.8002 -1.2054 18 6 1.6351 0.0690 -2.4961 19 6 2.0968 -0.6884 -3.7449 20 6 1.4914 -2.0968 -3.7258 21 6 1.9017 -2.8035 -2.4311 22 8 1.4693 -2.0300 -1.3100 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 2.1110 -1.6560 1.1952 27 1 2.1103 2.4605 5.7062 28 1 0.5514 0.1831 -2.5192 29 1 2.1045 1.0525 -2.4724 30 1 1.7630 -0.1585 -4.6370 31 1 3.1845 -0.7594 -3.7471 32 1 1.8587 -2.6626 -4.5818 33 1 0.4047 -2.0265 -3.7736 34 1 2.9862 -2.9096 -2.4031 35 1 1.4388 -3.7896 -2.3928 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393581334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:09 Heat of formation + Delta-G solvation = -184.669448 kcal Electronic energy + Delta-G solvation = -19030.584620 eV Core-core repulsion = 15960.106886 eV Total energy + Delta-G solvation = -3070.477734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56315 -37.45322 -36.75951 -36.12560 -35.16458 -34.49300 -32.14435 -29.71042 -28.19996 -26.21700 -24.70115 -22.29069 -21.04871 -20.82105 -19.34541 -18.36508 -17.44231 -17.06742 -16.75984 -16.49299 -15.90294 -15.61397 -15.37993 -15.32431 -14.35781 -14.14030 -13.95440 -13.69036 -13.59845 -13.42330 -13.01104 -12.71538 -12.53704 -12.50276 -12.39979 -12.26225 -12.17397 -11.99186 -11.75660 -11.43181 -11.24080 -11.22672 -10.89528 -10.33174 -10.14691 -8.72747 -7.44423 0.38859 1.35174 1.36266 1.53917 2.23005 2.60771 2.80545 3.02850 3.69898 3.77193 3.95063 3.99459 4.07357 4.18132 4.27989 4.43198 4.48558 4.51754 4.67796 4.74578 4.79939 4.91547 4.98266 5.02321 5.11561 5.16958 5.23290 5.31404 5.38323 5.47817 5.56143 6.00205 6.35529 6.43212 6.82167 8.24177 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.034068 B = 0.005913 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.678877 B = 4734.458958 C = 5056.526301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 H 0.088 0.912 4 N -1.115 6.115 5 S 2.717 3.283 6 O -1.049 7.049 7 O -1.044 7.044 8 C -1.034 5.034 9 H 0.127 0.873 10 C 0.069 3.931 11 N -0.896 5.896 12 Si 0.991 3.009 13 H -0.246 1.246 14 H -0.262 1.262 15 H -0.259 1.259 16 C 0.092 3.908 17 H 0.055 0.945 18 C -0.152 4.152 19 C -0.120 4.120 20 C -0.150 4.150 21 C 0.049 3.951 22 O -0.389 6.389 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.414 0.586 27 H 0.298 0.702 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 -4.886 -17.205 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.873 5.873 5 S 2.818 3.182 6 O -1.040 7.040 7 O -1.034 7.034 8 C -1.168 5.168 9 H 0.145 0.855 10 C -0.144 4.144 11 N -0.528 5.528 12 Si 0.809 3.191 13 H -0.168 1.168 14 H -0.187 1.187 15 H -0.183 1.183 16 C 0.032 3.968 17 H 0.073 0.927 18 C -0.190 4.190 19 C -0.158 4.158 20 C -0.188 4.188 21 C -0.027 4.027 22 O -0.308 6.308 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.087 0.913 26 H 0.247 0.753 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.120 -4.627 -16.586 17.705 hybrid contribution -0.561 0.111 0.532 0.781 sum -4.681 -4.516 -16.054 17.322 Atomic orbital electron populations 1.22331 0.94143 1.03253 1.02864 1.20904 0.95729 0.95499 0.83275 0.89442 1.55400 1.84545 1.19227 1.28151 0.99948 0.75703 0.71904 0.70638 1.93302 1.85157 1.65057 1.60451 1.93297 1.70206 1.57329 1.82528 1.31021 1.17309 1.45624 1.22832 0.85499 1.26035 1.01963 0.92617 0.93745 1.70008 1.29022 1.34859 1.18895 0.85087 0.76791 0.78335 0.78844 1.16833 1.18683 1.18334 1.22277 0.96505 0.83890 0.94112 0.92720 1.22278 1.03258 0.99581 0.93910 1.21627 1.00696 0.95878 0.97563 1.22183 1.01855 0.96576 0.98185 1.22801 0.99251 0.95088 0.85541 1.87916 1.69728 1.25909 1.47284 0.92761 0.89468 0.91335 0.75263 0.89213 0.89767 0.90169 0.89763 0.91819 0.89173 0.91051 0.93256 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.18 9.08 71.98 0.65 -4.53 16 2 C 0.15 5.32 2.78 44.99 0.13 5.44 16 3 H 0.09 3.24 7.50 -2.38 -0.02 3.23 16 4 N -1.12 -46.37 5.46 -169.40 -0.93 -47.29 16 5 S 2.72 149.41 5.00 -56.49 -0.28 149.13 16 6 O -1.05 -64.86 18.02 -128.00 -2.31 -67.17 16 7 O -1.04 -63.02 17.36 -128.00 -2.22 -65.24 16 8 C -1.03 -56.98 9.57 67.74 0.65 -56.33 16 9 H 0.13 6.26 5.62 -2.91 -0.02 6.24 16 10 C 0.07 3.85 5.46 84.66 0.46 4.31 16 11 N -0.90 -54.02 13.19 21.45 0.28 -53.74 16 12 Si 0.99 41.44 29.54 68.60 2.03 43.46 16 13 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 14 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 15 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 16 C 0.09 2.55 2.53 30.62 0.08 2.62 16 17 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 18 C -0.15 -3.20 5.22 30.69 0.16 -3.04 16 19 C -0.12 -1.95 6.04 30.76 0.19 -1.77 16 20 C -0.15 -2.28 6.14 30.73 0.19 -2.10 16 21 C 0.05 0.95 6.84 72.02 0.49 1.45 16 22 O -0.39 -10.41 9.24 -148.98 -1.38 -11.79 16 23 H 0.05 1.88 5.74 -2.39 -0.01 1.86 16 24 H 0.09 2.13 6.52 -2.38 -0.02 2.12 16 25 H 0.07 2.06 7.56 -2.39 -0.02 2.05 16 26 H 0.41 15.75 8.58 -96.74 -0.83 14.92 16 27 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 28 H 0.08 1.67 6.47 -2.39 -0.02 1.65 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -75.79 294.21 -1.54 -77.33 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.27 Total: 29.25 kcal Atomic # 6 Polarization: -56.93 SS G_CDS: 2.99 Total: -53.94 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -0.64 Total: -101.03 kcal Atomic # 8 Polarization: -138.30 SS G_CDS: -5.90 Total: -144.21 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 149.41 SS G_CDS: -0.28 Total: 149.13 kcal Total: -75.79 -1.54 -77.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393581334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.335 kcal (2) G-P(sol) polarization free energy of solvation -75.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds