Wall clock time and date at job start Mon Mar 30 2020 04:59:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09004 * 109.47065 * 2 1
4 4 N 1.46499 * 109.46635 * 119.99314 * 2 1 3
5 5 S 1.65610 * 119.99956 * 264.99805 * 4 2 1
6 6 O 1.42098 * 106.39808 * 178.54540 * 5 4 2
7 7 O 1.42100 * 106.40214 * 311.46508 * 5 4 2
8 8 C 1.76195 * 107.21542 * 65.00423 * 5 4 2
9 9 H 1.08001 * 120.00493 * 0.02562 * 8 5 4
10 10 C 1.37884 * 119.99846 * 179.97438 * 8 5 4
11 11 N 1.31512 * 119.99934 * 0.02562 * 10 8 5
12 12 Si 1.86797 * 119.99992 * 179.97438 * 10 8 5
13 13 H 1.48504 * 109.47190 * 0.02562 * 12 10 8
14 14 H 1.48504 * 109.46863 * 120.00252 * 12 10 8
15 15 H 1.48497 * 109.47109 * 240.00439 * 12 10 8
16 16 C 1.52991 * 109.47227 * 239.99162 * 2 1 3
17 17 H 1.08999 * 109.48875 * 185.02672 * 16 2 1
18 18 C 1.53098 * 109.47826 * 65.00265 * 16 2 1
19 19 C 1.53177 * 109.21356 * 182.37378 * 18 16 2
20 20 C 1.53311 * 108.96735 * 56.95427 * 19 18 16
21 21 C 1.53100 * 109.19441 * 303.05955 * 20 19 18
22 22 O 1.42899 * 109.48189 * 305.06139 * 16 2 1
23 23 H 1.09000 * 109.47231 * 300.00824 * 1 2 3
24 24 H 1.09005 * 109.47021 * 60.00417 * 1 2 3
25 25 H 1.08995 * 109.47207 * 180.02562 * 1 2 3
26 26 H 0.97000 * 120.00482 * 85.00692 * 4 2 1
27 27 H 0.97000 * 120.00136 * 179.97438 * 11 10 8
28 28 H 1.09002 * 109.52244 * 302.31317 * 18 16 2
29 29 H 1.09004 * 109.52508 * 62.43846 * 18 16 2
30 30 H 1.09001 * 109.54414 * 176.87772 * 19 18 16
31 31 H 1.09002 * 109.54680 * 297.14715 * 19 18 16
32 32 H 1.08992 * 109.51110 * 183.14032 * 20 19 18
33 33 H 1.09005 * 109.50614 * 62.96974 * 20 19 18
34 34 H 1.09002 * 109.47233 * 297.62202 * 21 20 19
35 35 H 1.09002 * 109.48291 * 177.59299 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0182 -0.6905 1.1963
5 16 2.4121 0.1775 2.5506
6 8 2.8123 -0.7694 3.5316
7 8 3.2435 1.2446 2.1155
8 6 0.9274 0.9151 3.1473
9 1 -0.0049 0.7490 2.6279
10 6 0.9554 1.7036 4.2781
11 7 2.0905 1.9055 4.9109
12 14 -0.6184 2.4862 4.9103
13 1 -1.7497 2.1072 4.0260
14 1 -0.8885 2.0094 6.2906
15 1 -0.4685 3.9635 4.9174
16 6 2.0400 -0.7214 -1.2491
17 1 3.1263 -0.8002 -1.2054
18 6 1.6351 0.0690 -2.4961
19 6 2.0968 -0.6884 -3.7449
20 6 1.4914 -2.0968 -3.7258
21 6 1.9017 -2.8035 -2.4311
22 8 1.4693 -2.0300 -1.3100
23 1 -0.3634 0.5140 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0276 0.0005
26 1 2.1110 -1.6560 1.1952
27 1 2.1103 2.4605 5.7062
28 1 0.5514 0.1831 -2.5192
29 1 2.1045 1.0525 -2.4724
30 1 1.7630 -0.1585 -4.6370
31 1 3.1845 -0.7594 -3.7471
32 1 1.8587 -2.6626 -4.5818
33 1 0.4047 -2.0265 -3.7736
34 1 2.9862 -2.9096 -2.4031
35 1 1.4388 -3.7896 -2.3928
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000393581334.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:59:09
Heat of formation + Delta-G solvation = -184.669448 kcal
Electronic energy + Delta-G solvation = -19030.584620 eV
Core-core repulsion = 15960.106886 eV
Total energy + Delta-G solvation = -3070.477734 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.56315 -37.45322 -36.75951 -36.12560 -35.16458 -34.49300 -32.14435 -29.71042
-28.19996 -26.21700 -24.70115 -22.29069 -21.04871 -20.82105 -19.34541 -18.36508
-17.44231 -17.06742 -16.75984 -16.49299 -15.90294 -15.61397 -15.37993 -15.32431
-14.35781 -14.14030 -13.95440 -13.69036 -13.59845 -13.42330 -13.01104 -12.71538
-12.53704 -12.50276 -12.39979 -12.26225 -12.17397 -11.99186 -11.75660 -11.43181
-11.24080 -11.22672 -10.89528 -10.33174 -10.14691 -8.72747 -7.44423 0.38859
1.35174 1.36266 1.53917 2.23005 2.60771 2.80545 3.02850 3.69898
3.77193 3.95063 3.99459 4.07357 4.18132 4.27989 4.43198 4.48558
4.51754 4.67796 4.74578 4.79939 4.91547 4.98266 5.02321 5.11561
5.16958 5.23290 5.31404 5.38323 5.47817 5.56143 6.00205 6.35529
6.43212 6.82167 8.24177
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.034068 B = 0.005913 C = 0.005536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 821.678877 B = 4734.458958 C = 5056.526301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.153 3.847
3 H 0.088 0.912
4 N -1.115 6.115
5 S 2.717 3.283
6 O -1.049 7.049
7 O -1.044 7.044
8 C -1.034 5.034
9 H 0.127 0.873
10 C 0.069 3.931
11 N -0.896 5.896
12 Si 0.991 3.009
13 H -0.246 1.246
14 H -0.262 1.262
15 H -0.259 1.259
16 C 0.092 3.908
17 H 0.055 0.945
18 C -0.152 4.152
19 C -0.120 4.120
20 C -0.150 4.150
21 C 0.049 3.951
22 O -0.389 6.389
23 H 0.053 0.947
24 H 0.087 0.913
25 H 0.068 0.932
26 H 0.414 0.586
27 H 0.298 0.702
28 H 0.084 0.916
29 H 0.080 0.920
30 H 0.084 0.916
31 H 0.063 0.937
32 H 0.090 0.910
33 H 0.071 0.929
34 H 0.049 0.951
35 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.003 -4.886 -17.205 18.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.046 3.954
3 H 0.106 0.894
4 N -0.873 5.873
5 S 2.818 3.182
6 O -1.040 7.040
7 O -1.034 7.034
8 C -1.168 5.168
9 H 0.145 0.855
10 C -0.144 4.144
11 N -0.528 5.528
12 Si 0.809 3.191
13 H -0.168 1.168
14 H -0.187 1.187
15 H -0.183 1.183
16 C 0.032 3.968
17 H 0.073 0.927
18 C -0.190 4.190
19 C -0.158 4.158
20 C -0.188 4.188
21 C -0.027 4.027
22 O -0.308 6.308
23 H 0.072 0.928
24 H 0.105 0.895
25 H 0.087 0.913
26 H 0.247 0.753
27 H 0.108 0.892
28 H 0.102 0.898
29 H 0.098 0.902
30 H 0.102 0.898
31 H 0.082 0.918
32 H 0.108 0.892
33 H 0.089 0.911
34 H 0.067 0.933
35 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -4.120 -4.627 -16.586 17.705
hybrid contribution -0.561 0.111 0.532 0.781
sum -4.681 -4.516 -16.054 17.322
Atomic orbital electron populations
1.22331 0.94143 1.03253 1.02864 1.20904 0.95729 0.95499 0.83275
0.89442 1.55400 1.84545 1.19227 1.28151 0.99948 0.75703 0.71904
0.70638 1.93302 1.85157 1.65057 1.60451 1.93297 1.70206 1.57329
1.82528 1.31021 1.17309 1.45624 1.22832 0.85499 1.26035 1.01963
0.92617 0.93745 1.70008 1.29022 1.34859 1.18895 0.85087 0.76791
0.78335 0.78844 1.16833 1.18683 1.18334 1.22277 0.96505 0.83890
0.94112 0.92720 1.22278 1.03258 0.99581 0.93910 1.21627 1.00696
0.95878 0.97563 1.22183 1.01855 0.96576 0.98185 1.22801 0.99251
0.95088 0.85541 1.87916 1.69728 1.25909 1.47284 0.92761 0.89468
0.91335 0.75263 0.89213 0.89767 0.90169 0.89763 0.91819 0.89173
0.91051 0.93256 0.87726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.18 9.08 71.98 0.65 -4.53 16
2 C 0.15 5.32 2.78 44.99 0.13 5.44 16
3 H 0.09 3.24 7.50 -2.38 -0.02 3.23 16
4 N -1.12 -46.37 5.46 -169.40 -0.93 -47.29 16
5 S 2.72 149.41 5.00 -56.49 -0.28 149.13 16
6 O -1.05 -64.86 18.02 -128.00 -2.31 -67.17 16
7 O -1.04 -63.02 17.36 -128.00 -2.22 -65.24 16
8 C -1.03 -56.98 9.57 67.74 0.65 -56.33 16
9 H 0.13 6.26 5.62 -2.91 -0.02 6.24 16
10 C 0.07 3.85 5.46 84.66 0.46 4.31 16
11 N -0.90 -54.02 13.19 21.45 0.28 -53.74 16
12 Si 0.99 41.44 29.54 68.60 2.03 43.46 16
13 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16
14 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16
15 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16
16 C 0.09 2.55 2.53 30.62 0.08 2.62 16
17 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16
18 C -0.15 -3.20 5.22 30.69 0.16 -3.04 16
19 C -0.12 -1.95 6.04 30.76 0.19 -1.77 16
20 C -0.15 -2.28 6.14 30.73 0.19 -2.10 16
21 C 0.05 0.95 6.84 72.02 0.49 1.45 16
22 O -0.39 -10.41 9.24 -148.98 -1.38 -11.79 16
23 H 0.05 1.88 5.74 -2.39 -0.01 1.86 16
24 H 0.09 2.13 6.52 -2.38 -0.02 2.12 16
25 H 0.07 2.06 7.56 -2.39 -0.02 2.05 16
26 H 0.41 15.75 8.58 -96.74 -0.83 14.92 16
27 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16
28 H 0.08 1.67 6.47 -2.39 -0.02 1.65 16
29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16
30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16
33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16
34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16
Total: -1.00 -75.79 294.21 -1.54 -77.33
By element:
Atomic # 1 Polarization: 28.98 SS G_CDS: 0.27 Total: 29.25 kcal
Atomic # 6 Polarization: -56.93 SS G_CDS: 2.99 Total: -53.94 kcal
Atomic # 7 Polarization: -100.39 SS G_CDS: -0.64 Total: -101.03 kcal
Atomic # 8 Polarization: -138.30 SS G_CDS: -5.90 Total: -144.21 kcal
Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal
Atomic # 16 Polarization: 149.41 SS G_CDS: -0.28 Total: 149.13 kcal
Total: -75.79 -1.54 -77.33 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393581334.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -107.335 kcal
(2) G-P(sol) polarization free energy of solvation -75.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -184.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds